AboutBlogDownloadExploreHelpGet Data
Email Us Mastodon BlueSky Facebook LinkedIn YouTube
Saccharomyces Genome Database
  • Saccharomyces Genome Database
    Saccharomyces Genome Database
  • Menu
  • Analyze
    • Gene Lists
    • BLAST
    • Fungal BLAST
    • GO Term Finder
    • GO Slim Mapper
    • Pattern Matching
    • Design Primers
    • Restriction Site Mapper
  • Sequence
    • Download
    • Genome Browser
    • BLAST
    • Fungal BLAST
    • Gene/Sequence Resources
    • Reference Genome
      • Download Genome
      • Genome Snapshot
      • Chromosome History
      • Systematic Sequencing Table
      • Original Sequence Papers
    • Strains and Species
      • Variant Viewer
      • Align Strain Sequences
    • Resources
      • UniProtKB
      • InterPro (EBI)
      • HomoloGene (NCBI)
      • YGOB (Trinity College)
      • AlphaFold
  • Function
    • Gene Ontology
      • GO Term Finder
      • GO Slim Mapper
      • GO Slim Mapping File
    • Expression
    • Biochemical Pathways
    • Phenotypes
      • Browse All Phenotypes
    • Interactions
    • YeastGFP
    • Resources
      • GO Consortium
      • BioGRID (U. Toronto)
  • Literature
    • Full-text Search
    • New Yeast Papers
    • YeastBook
    • Resources
      • PubMed (NCBI)
      • PubMed Central (NCBI)
      • Google Scholar
  • Community
    • Community Forum
    • Colleague Information
      • Find a Colleague
      • Add or Update Info
      • Find a Yeast Lab
    • Education
    • Meetings
    • Nomenclature
      • Submit a Gene Registration
      • Gene Registry
      • Nomenclature Conventions
    • Methods and Reagents
      • Strains
    • Historical Data
      • Physical & Genetic Maps
      • Genetic Maps
      • Genetic Loci
      • ORFMap Chromosomes
      • Sequence
    • Submit Data
    • API
  • Info & Downloads
    • About
    • Blog
    • Downloads
    • Site Map
    • Help
  • Author: Bhaumik SR
  • References

Author: Bhaumik SR


References 51 references


No citations for this author.

Download References (.nbib)

  • Barman P, et al. (2025) TAP-MS analysis of FACT interactions and regulation by a ubiquitin ligase, San1. Biochim Biophys Acta Gene Regul Mech 1868(1):195077 PMID:39855624
    • SGD Paper
    • DOI full text
    • PubMed
  • Barman P, et al. (2024) Ubiquitin-proteasome system regulation of a key gene regulatory factor, Paf1C. Gene 894:148004 PMID:37977317
    • SGD Paper
    • DOI full text
    • PubMed
  • Barman P, et al. (2023) A novel ubiquitin-proteasome system regulation of Sgf73/ataxin-7 that maintains the integrity of the coactivator SAGA in orchestrating transcription. Genetics 224(3) PMID:37075097
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Barman P, et al. (2023) UPS writes a new saga of SAGA. Biochim Biophys Acta Gene Regul Mech 1866(4):194981 PMID:37657588
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Barman P, et al. (2022) Genome-Wide Regulations of the Preinitiation Complex Formation and Elongating RNA Polymerase II by an E3 Ubiquitin Ligase, San1. Mol Cell Biol 42(1):e0036821 PMID:34661445
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Ferdoush J, et al. (2020) An F-Box Protein, Mdm30, Interacts with TREX Subunit Sub2 To Regulate Cellular Abundance Cotranscriptionally in Orchestrating mRNA Export Independently of Splicing and Mitochondrial Function. Mol Cell Biol 40(7) PMID:31932480
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Sen R, et al. (2019) Distinct Functions of the Cap-Binding Complex in Stimulation of Nuclear mRNA Export. Mol Cell Biol 39(8) PMID:30745412
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Uprety B, et al. (2018) TOR Facilitates the Targeting of the 19S Proteasome Subcomplex To Enhance Transcription Complex Assembly at the Promoters of the Ribosomal Protein Genes. Mol Cell Biol 38(14) PMID:29712756
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Ferdoush J, et al. (2017) Ubiquitin-Proteasome System Regulation of an Evolutionarily Conserved RNA Polymerase II-Associated Factor 1 Involved in Pancreatic Oncogenesis. Biochemistry 56(46):6083-6086 PMID:29023102
    • SGD Paper
    • DOI full text
    • PubMed
  • Sen R, et al. (2017) An mRNA Capping Enzyme Targets FACT to the Active Gene To Enhance the Engagement of RNA Polymerase II into Transcriptional Elongation. Mol Cell Biol 37(13) PMID:28396559
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Sen R, et al. (2016) Fine-Tuning of FACT by the Ubiquitin Proteasome System in Regulation of Transcriptional Elongation. Mol Cell Biol 36(11):1691-703 PMID:27044865
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Uprety B, et al. (2016) Regulation of Antisense Transcription by NuA4 Histone Acetyltransferase and Other Chromatin Regulatory Factors. Mol Cell Biol 36(6):992-1006 PMID:26755557
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Uprety B, et al. (2015) Eaf1p Is Required for Recruitment of NuA4 in Targeting TFIID to the Promoters of the Ribosomal Protein Genes for Transcriptional Initiation In Vivo. Mol Cell Biol 35(17):2947-64 PMID:26100014
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Durairaj G, et al. (2014) Sus1p facilitates pre-initiation complex formation at the SAGA-regulated genes independently of histone H2B de-ubiquitylation. J Mol Biol 426(16):2928-2941 PMID:24911582
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Durairaj G, et al. (2014) A new regulatory pathway of mRNA export by an F-box protein, Mdm30. RNA 20(2):133-42 PMID:24327750
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Lahudkar S, et al. (2014) A novel role for Cet1p mRNA 5'-triphosphatase in promoter proximal accumulation of RNA polymerase II in Saccharomyces cerevisiase. Genetics 196(1):161-76 PMID:24172134
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Malik S and Bhaumik SR (2014) Regulation of active genome integrity and expression by Rad26p. Nucleus 5(6):520-6 PMID:25484185
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Sen R, et al. (2014) Rrd1p, an RNA polymerase II-specific prolyl isomerase and activator of phosphoprotein phosphatase, promotes transcription independently of rapamycin response. Nucleic Acids Res 42(15):9892-907 PMID:25114048
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Chaurasia P, et al. (2013) Functional analysis of Rad14p, a DNA damage recognition factor in nucleotide excision repair, in regulation of transcription in vivo. J Biol Chem 288(2):793-806 PMID:23188830
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Malik S, et al. (2013) Mechanisms of antisense transcription initiation from the 3' end of the GAL10 coding sequence in vivo. Mol Cell Biol 33(18):3549-67 PMID:23836882
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Sen R and Bhaumik SR (2013) Transcriptional stimulatory and repressive functions of histone H2B ubiquitin ligase. Transcription 4(5):221-6 PMID:24135701
    • SGD Paper
    • DOI full text
    • PubMed
  • Sen R, et al. (2013) Functional analysis of Bre1p, an E3 ligase for histone H2B ubiquitylation, in regulation of RNA polymerase II association with active genes and transcription in vivo. J Biol Chem 288(14):9619-9633 PMID:23417674
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Chaurasia P, et al. (2012) Preferential repair of DNA double-strand break at the active gene in vivo. J Biol Chem 287(43):36414-22 PMID:22910905
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Malik S and Bhaumik SR (2012) Rad26p, a transcription-coupled repair factor, promotes the eviction and prevents the reassociation of histone H2A-H2B dimer during transcriptional elongation in vivo. Biochemistry 51(30):5873-5 PMID:22794311
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Malik S, et al. (2012) Rad26p regulates the occupancy of histone H2A-H2B dimer at the active genes in vivo. Nucleic Acids Res 40(8):3348-63 PMID:22199252
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Shukla A, et al. (2012) Sgf29p facilitates the recruitment of TATA box binding protein but does not alter SAGA's global structural integrity in vivo. Biochemistry 51(2):706-14 PMID:22224423
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Uprety B, et al. (2012) The 19S proteasome subcomplex promotes the targeting of NuA4 HAT to the promoters of ribosomal protein genes to facilitate the recruitment of TFIID for transcriptional initiation in vivo. Nucleic Acids Res 40(5):1969-83 PMID:22086954
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Bhaumik SR (2011) Distinct regulatory mechanisms of eukaryotic transcriptional activation by SAGA and TFIID. Biochim Biophys Acta 1809(2):97-108 PMID:20800707
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Lahudkar S, et al. (2011) The mRNA cap-binding complex stimulates the formation of pre-initiation complex at the promoter via its interaction with Mot1p in vivo. Nucleic Acids Res 39(6):2188-209 PMID:21075799
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Durairaj G, et al. (2010) Regulation of chromatin assembly/disassembly by Rtt109p, a histone H3 Lys56-specific acetyltransferase, in vivo. J Biol Chem 285(40):30472-9 PMID:20668333
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Malik S and Bhaumik SR (2010) Mixed lineage leukemia: histone H3 lysine 4 methyltransferases from yeast to human. FEBS J 277(8):1805-21 PMID:20236312
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Malik S, et al. (2010) Rad26p, a transcription-coupled repair factor, is recruited to the site of DNA lesion in an elongating RNA polymerase II-dependent manner in vivo. Nucleic Acids Res 38(5):1461-77 PMID:20007604
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Malik S, et al. (2009) The 19 s proteasome subcomplex establishes a specific protein interaction network at the promoter for stimulated transcriptional initiation in vivo. J Biol Chem 284(51):35714-24 PMID:19843524
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Qin S, et al. (2009) Sem1p and Ubp6p orchestrate telomeric silencing by modulating histone H2B ubiquitination and H3 acetylation. Nucleic Acids Res 37(6):1843-53 PMID:19188254
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Shukla A, et al. (2009) Stimulation of mRNA export by an F-box protein, Mdm30p, in vivo. J Mol Biol 389(2):238-47 PMID:19376128
    • SGD Paper
    • DOI full text
    • PubMed
  • Malik S, et al. (2008) Elongating RNA polymerase II is disassembled through specific degradation of its largest but not other subunits in response to DNA damage in vivo. J Biol Chem 283(11):6897-905 PMID:18195014
    • SGD Paper
    • DOI full text
    • PubMed
  • Lee JS, et al. (2007) Histone crosstalk between H2B monoubiquitination and H3 methylation mediated by COMPASS. Cell 131(6):1084-96 PMID:18083099
    • SGD Paper
    • DOI full text
    • PubMed
  • Shukla A and Bhaumik SR (2007) H2B-K123 ubiquitination stimulates RNAPII elongation independent of H3-K4 methylation. Biochem Biophys Res Commun 359(2):214-20 PMID:17543890
    • SGD Paper
    • DOI full text
    • PubMed
  • Wood A, et al. (2007) Ctk complex-mediated regulation of histone methylation by COMPASS. Mol Cell Biol 27(2):709-20 PMID:17088385
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Bhaumik SR (2006) Analysis of in vivo targets of transcriptional activators by fluorescence resonance energy transfer. Methods 40(4):353-9 PMID:17101448
    • SGD Paper
    • DOI full text
    • PubMed
  • Schneider J, et al. (2006) Rtt109 is required for proper H3K56 acetylation: a chromatin mark associated with the elongating RNA polymerase II. J Biol Chem 281(49):37270-4 PMID:17046836
    • SGD Paper
    • DOI full text
    • PubMed
  • Shukla A, et al. (2006) Functional analysis of H2B-Lys-123 ubiquitination in regulation of H3-Lys-4 methylation and recruitment of RNA polymerase II at the coding sequences of several active genes in vivo. J Biol Chem 281(28):19045-54 PMID:16675445
    • SGD Paper
    • DOI full text
    • PubMed
  • Shukla A, et al. (2006) SAGA-associated Sgf73p facilitates formation of the preinitiation complex assembly at the promoters either in a HAT-dependent or independent manner in vivo. Nucleic Acids Res 34(21):6225-32 PMID:17090597
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Shukla A, et al. (2006) Ubp8p, a histone deubiquitinase whose association with SAGA is mediated by Sgf11p, differentially regulates lysine 4 methylation of histone H3 in vivo. Mol Cell Biol 26(9):3339-52 PMID:16611979
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Bhaumik SR, et al. (2004) In vivo target of a transcriptional activator revealed by fluorescence resonance energy transfer. Genes Dev 18(3):333-43 PMID:14871930
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Bhaumik SR and Green MR (2003) Interaction of Gal4p with components of transcription machinery in vivo. Methods Enzymol 370:445-54 PMID:14712666
    • SGD Paper
    • DOI full text
    • PubMed
  • Shen WC, et al. (2003) Systematic analysis of essential yeast TAFs in genome-wide transcription and preinitiation complex assembly. EMBO J 22(13):3395-402 PMID:12840001
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
    • Reference supplement
  • Bhaumik SR and Green MR (2002) Differential requirement of SAGA components for recruitment of TATA-box-binding protein to promoters in vivo. Mol Cell Biol 22(21):7365-71 PMID:12370284
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Li XY, et al. (2002) Selective recruitment of TAFs by yeast upstream activating sequences. Implications for eukaryotic promoter structure. Curr Biol 12(14):1240-4 PMID:12176335
    • SGD Paper
    • DOI full text
    • PubMed
  • Bhaumik SR and Green MR (2001) SAGA is an essential in vivo target of the yeast acidic activator Gal4p. Genes Dev 15(15):1935-45 PMID:11485988
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Li XY, et al. (2000) Distinct classes of yeast promoters revealed by differential TAF recruitment. Science 288(5469):1242-4 PMID:10817999
    • SGD Paper
    • DOI full text
    • PubMed
  • SGD
  • About
  • Blog
  • Help
  • Privacy Policy
  • Creative Commons License
© Stanford University, Stanford, CA 94305.
Back to Top