AboutBlogDownloadExploreHelpGet Data
Email Us Mastodon BlueSky Facebook LinkedIn YouTube
Saccharomyces Genome Database
  • Saccharomyces Genome Database
    Saccharomyces Genome Database
  • Menu
  • Analyze
    • Gene Lists
    • BLAST
    • Fungal BLAST
    • GO Term Finder
    • GO Slim Mapper
    • Pattern Matching
    • Design Primers
    • Restriction Site Mapper
  • Sequence
    • Download
    • Genome Browser
    • BLAST
    • Fungal BLAST
    • Gene/Sequence Resources
    • Reference Genome
      • Download Genome
      • Genome Snapshot
      • Chromosome History
      • Systematic Sequencing Table
      • Original Sequence Papers
    • Strains and Species
      • Variant Viewer
      • Align Strain Sequences
    • Resources
      • UniProtKB
      • InterPro (EBI)
      • HomoloGene (NCBI)
      • YGOB (Trinity College)
      • AlphaFold
  • Function
    • Gene Ontology
      • GO Term Finder
      • GO Slim Mapper
      • GO Slim Mapping File
    • Expression
    • Biochemical Pathways
    • Phenotypes
      • Browse All Phenotypes
    • Interactions
    • YeastGFP
    • Resources
      • GO Consortium
      • BioGRID (U. Toronto)
  • Literature
    • Full-text Search
    • New Yeast Papers
    • YeastBook
    • Resources
      • PubMed (NCBI)
      • PubMed Central (NCBI)
      • Google Scholar
  • Community
    • Community Forum
    • Colleague Information
      • Find a Colleague
      • Add or Update Info
      • Find a Yeast Lab
    • Education
    • Meetings
    • Nomenclature
      • Submit a Gene Registration
      • Gene Registry
      • Nomenclature Conventions
    • Methods and Reagents
      • Strains
    • Historical Data
      • Physical & Genetic Maps
      • Genetic Maps
      • Genetic Loci
      • ORFMap Chromosomes
      • Sequence
    • Submit Data
    • API
  • Info & Downloads
    • About
    • Blog
    • Downloads
    • Site Map
    • Help
  • Author: Xie J
  • References

Author: Xie J


References 41 references


No citations for this author.

Download References (.nbib)

  • Miao Y, et al. (2025) Metagenomics and volatile metabolomics reveal microbial succession and flavor formation mechanisms during fermentation of Novel Pasture-style Laozao. Food Chem X 28:102598 PMID:40528946
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Wang Y, et al. (2024) Yeast Prion Protein Sup35 Initiates α-Synuclein Pathology in Parkinson's Disease. Mov Disord 39(5):766-767 PMID:38627965
    • SGD Paper
    • DOI full text
    • PubMed
  • Xie J, et al. (2024) ER stress-induced transcriptional response reveals tolerance genes in yeast. Biotechnol J 19(6):e2400082 PMID:38896412
    • SGD Paper
    • DOI full text
    • PubMed
  • Girbig M, et al. (2022) Architecture of the yeast Pol III pre-termination complex and pausing mechanism on poly(dT) termination signals. Cell Rep 40(10):111316 PMID:36070694
    • SGD Paper
    • DOI full text
    • PubMed
  • Xie J, et al. (2022) An integrated model for termination of RNA polymerase III transcription. Sci Adv 8(28):eabm9875 PMID:35857496
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Zhou X, et al. (2022) Artificial optimization of bamboo Ppmar2 transposase and host factors effects on Ppmar2 transposition in yeast. Front Plant Sci 13:1004732 PMID:36340339
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Han P, et al. (2021) A DNA Inversion System in Eukaryotes Established via Laboratory Evolution. ACS Synth Biol 10(9):2222-2230 PMID:34420293
    • SGD Paper
    • DOI full text
    • PubMed
  • Xie C, et al. (2021) Early Secretory Pathway-Associated Proteins SsEmp24 and SsErv25 Are Involved in Morphogenesis and Pathogenicity in a Filamentous Phytopathogenic Fungus. mBio 12(6):e0317321 PMID:34933451
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Xie J, et al. (2020) PRIME-3D2D is a 3D2D model to predict binding sites of protein-RNA interaction. Commun Biol 3(1):384 PMID:32678300
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Xie J, et al. (2019) DNMHMM: An approach to identify the differential nucleosome regions in multiple cell types based on a Hidden Markov Model. Biosystems 185:104033 PMID:31541672
    • SGD Paper
    • DOI full text
    • PubMed
  • Xie J, et al. (2019) DNMHMM: An approach to identify the differential nucleosome regions in multiple cell types based on a Hidden Markov Model. Biosystems 185:104033 PMID:31541672
    • SGD Paper
    • DOI full text
    • PubMed
  • Fan M, et al. (2018) Integrating sugarcane molasses into sequential cellulosic biofuel production based on SSF process of high solid loading. Biotechnol Biofuels 11:329 PMID:30568729
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Zheng J, et al. (2018) Deep-RBPPred: Predicting RNA binding proteins in the proteome scale based on deep learning. Sci Rep 8(1):15264 PMID:30323214
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Liu L, et al. (2017) An approach of identifying differential nucleosome regions in multiple samples. BMC Genomics 18(1):135 PMID:28173752
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Xie J, et al. (2016) An Adaptive Hybrid Algorithm for Global Network Alignment. IEEE/ACM Trans Comput Biol Bioinform 13(3):483-93 PMID:27295633
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Chen Y, et al. (2014) Control of glycolytic flux in directed biosynthesis of uridine-phosphoryl compounds through the manipulation of ATP availability. Appl Microbiol Biotechnol 98(15):6621-32 PMID:24769901
    • SGD Paper
    • DOI full text
    • PubMed
  • Wei W, et al. (2013) CmPEX6, a gene involved in peroxisome biogenesis, is essential for parasitism and conidiation by the sclerotial parasite Coniothyrium minitans. Appl Environ Microbiol 79(12):3658-66 PMID:23563946
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Daye ZJ, et al. (2012) A Sparse Structured Shrinkage Estimator for Nonparametric Varying-Coefficient Model with an Application in Genomics. J Comput Graph Stat 21(1):110-133 PMID:22904608
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Liu D, et al. (2012) Enhanced uridine 5'-monophosphate production by whole cell of Saccharomyces cerevisiae through rational redistribution of metabolic flux. Bioprocess Biosyst Eng 35(5):729-37 PMID:22081050
    • SGD Paper
    • DOI full text
    • PubMed
  • Niu H, et al. (2012) Ion-exclusion chromatography determination of organic acid in uridine 5'-monophosphate fermentation broth. J Chromatogr Sci 50(8):709-13 PMID:22634191
    • SGD Paper
    • DOI full text
    • PubMed
  • Chen J, et al. (2011) A penalized likelihood approach for bivariate conditional normal models for dynamic co-expression analysis. Biometrics 67(1):299-308 PMID:20374241
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Heo JM, et al. (2010) A stress-responsive system for mitochondrial protein degradation. Mol Cell 40(3):465-80 PMID:21070972
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Xie J, et al. (2009) Screening of small molecule interactor library by using in-cell NMR spectroscopy (SMILI-NMR). J Med Chem 52(11):3516-22 PMID:19422228
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Ying T, et al. (2009) Evolutionary alkaline transition in human cytochrome c. J Bioenerg Biomembr 41(3):251-7 PMID:19593652
    • SGD Paper
    • DOI full text
    • PubMed
  • Yuan W, et al. (2009) Heterogeneous nuclear ribonucleoprotein L Is a subunit of human KMT3a/Set2 complex required for H3 Lys-36 trimethylation activity in vivo. J Biol Chem 284(23):15701-7 PMID:19332550
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Zeng L, et al. (2008) Statistical methods in integrative analysis for gene regulatory modules. Stat Appl Genet Mol Biol 7(1):Article 28 PMID:18976224
    • SGD Paper
    • DOI full text
    • PubMed
  • Wang L, et al. (2006) Expanding the genetic code. Annu Rev Biophys Biomol Struct 35:225-49 PMID:16689635
    • SGD Paper
    • DOI full text
    • PubMed
  • Xie J and Schultz PG (2006) A chemical toolkit for proteins--an expanded genetic code. Nat Rev Mol Cell Biol 7(10):775-82 PMID:16926858
    • SGD Paper
    • DOI full text
    • PubMed
  • Xie J and Schultz PG (2005) An expanding genetic code. Methods 36(3):227-38 PMID:16076448
    • SGD Paper
    • DOI full text
    • PubMed
  • Xie J and Schultz PG (2005) Adding amino acids to the genetic repertoire. Curr Opin Chem Biol 9(6):548-54 PMID:16260173
    • SGD Paper
    • DOI full text
    • PubMed
  • McCord R, et al. (2003) Rfm1, a novel tethering factor required to recruit the Hst1 histone deacetylase for repression of middle sporulation genes. Mol Cell Biol 23(6):2009-16 PMID:12612074
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Zhang M, et al. (2003) On-line solid-phase extraction of ceramides from yeast with ceramide III imprinted monolith. J Chromatogr A 984(2):173-83 PMID:12564688
    • SGD Paper
    • DOI full text
    • PubMed
  • Liu C, et al. (2001) [High concentration ethanol continuous fermentation using yeast flocs]. Wei Sheng Wu Xue Bao 41(3):367-71 PMID:12549094
    • SGD Paper
    • PubMed
  • Lemaire M, et al. (2000) The NC2 repressor is dispensable in yeast mutated for the Sin4p component of the holoenzyme and plays roles similar to Mot1p in vivo. Mol Microbiol 36(1):163-73 PMID:10760173
    • SGD Paper
    • DOI full text
    • PubMed
  • Lindgren A, et al. (2000) The pachytene checkpoint in Saccharomyces cerevisiae requires the Sum1 transcriptional repressor. EMBO J 19(23):6489-97 PMID:11101521
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Xie J, et al. (2000) A single point mutation in TFIIA suppresses NC2 requirement in vivo. EMBO J 19(4):672-82 PMID:10675336
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Xie J, et al. (1999) [Industrial scale-up of continuous ethanol fermentation using yeast flocs]. Wei Sheng Wu Xue Bao 39(4):367-72 PMID:12555578
    • SGD Paper
    • PubMed
  • Xie J, et al. (1999) Sum1 and Hst1 repress middle sporulation-specific gene expression during mitosis in Saccharomyces cerevisiae. EMBO J 18(22):6448-54 PMID:10562556
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Pierce M, et al. (1998) Transcriptional regulation of the SMK1 mitogen-activated protein kinase gene during meiotic development in Saccharomyces cerevisiae. Mol Cell Biol 18(10):5970-80 PMID:9742114
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Xie J, et al. (1998) Progression through the spliceosome cycle requires Prp38p function for U4/U6 snRNA dissociation. EMBO J 17(10):2938-46 PMID:9582287
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Gailus-Durner V, et al. (1996) Participation of the yeast activator Abf1 in meiosis-specific expression of the HOP1 gene. Mol Cell Biol 16(6):2777-86 PMID:8649386
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • SGD
  • About
  • Blog
  • Help
  • Privacy Policy
  • Creative Commons License
© Stanford University, Stanford, CA 94305.
Back to Top