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  • Author: Strahl BD
  • References

Author: Strahl BD


References 64 references


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  • Chen B, et al. (2025) Spt6-Spn1 interaction is required for RNA polymerase II association and precise nucleosome positioning along transcribed genes. J Biol Chem 301(5):108436 PMID:40127868
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Nguyen MC, et al. (2024) Molecular insight into interactions between the Taf14, Yng1 and Sas3 subunits of the NuA3 complex. Nat Commun 15(1):5335 PMID:38914563
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Klein BJ, et al. (2022) Taf2 mediates DNA binding of Taf14. Nat Commun 13(1):3177 PMID:35676274
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Strahl BD and Briggs SD (2021) The SAGA continues: The rise of cis- and trans-histone crosstalk pathways. Biochim Biophys Acta Gene Regul Mech 1864(2):194600 PMID:32645359
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Yoblinski AR, et al. (2021) Catalysis-dependent and redundant roles of Dma1 and Dma2 in maintenance of genome stability in Saccharomyces cerevisiae. J Biol Chem 296:100721 PMID:33933452
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Zhang J, et al. (2021) Recognition of acetylated histone by Yaf9 regulates metabolic cycling of transcription initiation and chromatin regulatory factors. Genes Dev 35(23-24):1678-1692 PMID:34819351
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Braberg H, et al. (2020) Genetic interaction mapping informs integrative structure determination of protein complexes. Science 370(6522) PMID:33303586
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • DiFiore JV, et al. (2020) Unique and Shared Roles for Histone H3K36 Methylation States in Transcription Regulation Functions. Cell Rep 31(10):107751 PMID:32521276
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Lerner AM, et al. (2020) An optogenetic switch for the Set2 methyltransferase provides evidence for transcription-dependent and -independent dynamics of H3K36 methylation. Genome Res 30(11):1605-1617 PMID:33020206
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Meriesh HA, et al. (2020) The histone H4 basic patch regulates SAGA-mediated H2B deubiquitination and histone acetylation. J Biol Chem 295(19):6561-6569 PMID:32245891
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Gowans GJ, et al. (2019) Recognition of Histone Crotonylation by Taf14 Links Metabolic State to Gene Expression. Mol Cell 76(6):909-921.e3 PMID:31676231
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Dronamraju R, et al. (2018) Set2 methyltransferase facilitates cell cycle progression by maintaining transcriptional fidelity. Nucleic Acids Res 46(3):1331-1344 PMID:29294086
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Dronamraju R, et al. (2018) Spt6 Association with RNA Polymerase II Directs mRNA Turnover During Transcription. Mol Cell 70(6):1054-1066.e4 PMID:29932900
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Dronamraju R, et al. (2018) Casein Kinase II Phosphorylation of Spt6 Enforces Transcriptional Fidelity by Maintaining Spn1-Spt6 Interaction. Cell Rep 25(12):3476-3489.e5 PMID:30566871
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Klein BJ, et al. (2018) Structural insights into the π-π-π stacking mechanism and DNA-binding activity of the YEATS domain. Nat Commun 9(1):4574 PMID:30385749
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Klein BJ, et al. (2018) Yaf9 subunit of the NuA4 and SWR1 complexes targets histone H3K27ac through its YEATS domain. Nucleic Acids Res 46(1):421-430 PMID:29145630
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Dronamraju R, et al. (2017) Redundant Functions for Nap1 and Chz1 in H2A.Z Deposition. Sci Rep 7(1):10791 PMID:28883625
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • McDaniel SL, et al. (2017) H3K36 Methylation Regulates Nutrient Stress Response in Saccharomyces cerevisiae by Enforcing Transcriptional Fidelity. Cell Rep 19(11):2371-2382 PMID:28614721
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Tencer AH, et al. (2017) A Unique pH-Dependent Recognition of Methylated Histone H3K4 by PPS and DIDO. Structure 25(10):1530-1539.e3 PMID:28919441
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Andrews FH, et al. (2016) The essential role of acetyllysine binding by the YEATS domain in transcriptional regulation. Transcription 7(1):14-20 PMID:26934307
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Andrews FH, et al. (2016) The Taf14 YEATS domain is a reader of histone crotonylation. Nat Chem Biol 12(6):396-8 PMID:27089029
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Bedard LG, et al. (2016) Quantitative Analysis of Dynamic Protein Interactions during Transcription Reveals a Role for Casein Kinase II in Polymerase-associated Factor (PAF) Complex Phosphorylation and Regulation of Histone H2B Monoubiquitylation. J Biol Chem 291(26):13410-20 PMID:27143358
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Chen H, et al. (2016) Histone H3 and TORC1 prevent organelle dysfunction and cell death by promoting nuclear retention of HMGB proteins. Epigenetics Chromatin 9:34 PMID:27540414
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Hacker KE, et al. (2016) Structure/Function Analysis of Recurrent Mutations in SETD2 Protein Reveals a Critical and Conserved Role for a SET Domain Residue in Maintaining Protein Stability and Histone H3 Lys-36 Trimethylation. J Biol Chem 291(40):21283-21295 PMID:27528607
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Sorenson MR, et al. (2016) Histone H3K36 methylation regulates pre-mRNA splicing in Saccharomyces cerevisiae. RNA Biol 13(4):412-26 PMID:26821844
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Yumerefendi H, et al. (2016) Light-induced nuclear export reveals rapid dynamics of epigenetic modifications. Nat Chem Biol 12(6):399-401 PMID:27089030
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Shanle EK, et al. (2015) Association of Taf14 with acetylated histone H3 directs gene transcription and the DNA damage response. Genes Dev 29(17):1795-800 PMID:26341557
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Dronamraju R and Strahl BD (2014) A feed forward circuit comprising Spt6, Ctk1 and PAF regulates Pol II CTD phosphorylation and transcription elongation. Nucleic Acids Res 42(2):870-81 PMID:24163256
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Gilbert TM, et al. (2014) A PWWP domain-containing protein targets the NuA3 acetyltransferase complex via histone H3 lysine 36 trimethylation to coordinate transcriptional elongation at coding regions. Mol Cell Proteomics 13(11):2883-95 PMID:25104842
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Gilbert TM, et al. (2014)
    • SGD Paper
  • Wozniak GG and Strahl BD (2014) Catalysis-dependent stabilization of Bre1 fine-tunes histone H2B ubiquitylation to regulate gene transcription. Genes Dev 28(15):1647-52 PMID:25085417
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Kinkelin K, et al. (2013) Structures of RNA polymerase II complexes with Bye1, a chromatin-binding PHF3/DIDO homologue. Proc Natl Acad Sci U S A 110(38):15277-82 PMID:24003114
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • McDaniel SL and Strahl BD (2013) Stress-free with Rpd3: a unique chromatin complex mediates the response to oxidative stress. Mol Cell Biol 33(19):3726-7 PMID:23938299
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Fuchs SM, et al. (2012) RNA polymerase II carboxyl-terminal domain phosphorylation regulates protein stability of the Set2 methyltransferase and histone H3 di- and trimethylation at lysine 36. J Biol Chem 287(5):3249-56 PMID:22157004
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Rizzardi LF, et al. (2012) DNA replication origin function is promoted by H3K4 di-methylation in Saccharomyces cerevisiae. Genetics 192(2):371-84 PMID:22851644
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Gardner KE, et al. (2011) Identification of lysine 37 of histone H2B as a novel site of methylation. PLoS One 6(1):e16244 PMID:21249157
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Kerr SC, et al. (2011) The Ccr4-Not complex interacts with the mRNA export machinery. PLoS One 6(3):e18302 PMID:21464899
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Fuchs SM, et al. (2009) Protein modifications in transcription elongation. Biochim Biophys Acta 1789(1):26-36 PMID:18718879
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Lickwar CR, et al. (2009) The Set2/Rpd3S pathway suppresses cryptic transcription without regard to gene length or transcription frequency. PLoS One 4(3):e4886 PMID:19295910
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Nakanishi S, et al. (2009) Histone H2BK123 monoubiquitination is the critical determinant for H3K4 and H3K79 trimethylation by COMPASS and Dot1. J Cell Biol 186(3):371-7 PMID:19667127
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Merker JD, et al. (2008) The histone methylase Set2p and the histone deacetylase Rpd3p repress meiotic recombination at the HIS4 meiotic recombination hotspot in Saccharomyces cerevisiae. DNA Repair (Amst) 7(8):1298-308 PMID:18515193
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Youdell ML, et al. (2008) Roles for Ctk1 and Spt6 in regulating the different methylation states of histone H3 lysine 36. Mol Cell Biol 28(16):4915-26 PMID:18541663
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Garcia BA, et al. (2007) Organismal differences in post-translational modifications in histones H3 and H4. J Biol Chem 282(10):7641-55 PMID:17194708
    • SGD Paper
    • DOI full text
    • PubMed
  • Laribee RN, et al. (2007) CCR4/NOT complex associates with the proteasome and regulates histone methylation. Proc Natl Acad Sci U S A 104(14):5836-41 PMID:17389396
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Morris SA, et al. (2007) Identification of histone H3 lysine 36 acetylation as a highly conserved histone modification. J Biol Chem 282(10):7632-40 PMID:17189264
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Wyce A, et al. (2007) H2B ubiquitylation acts as a barrier to Ctk1 nucleosomal recruitment prior to removal by Ubp8 within a SAGA-related complex. Mol Cell 27(2):275-288 PMID:17643376
    • SGD Paper
    • DOI full text
    • PubMed
  • Xiao T, et al. (2007) The RNA polymerase II kinase Ctk1 regulates positioning of a 5' histone methylation boundary along genes. Mol Cell Biol 27(2):721-31 PMID:17088384
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Biswas D, et al. (2006) Opposing roles for Set2 and yFACT in regulating TBP binding at promoters. EMBO J 25(19):4479-89 PMID:16977311
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Kizer KO, et al. (2006) Accelerated nuclei preparation and methods for analysis of histone modifications in yeast. Methods 40(4):296-302 PMID:17101440
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Tripic T, et al. (2006) The Set2 methyltransferase associates with Ssn6 yet Tup1-Ssn6 repression is independent of histone methylation. Biochem Biophys Res Commun 339(3):905-14 PMID:16329992
    • SGD Paper
    • DOI full text
    • PubMed
  • Vojnic E, et al. (2006) Structure and carboxyl-terminal domain (CTD) binding of the Set2 SRI domain that couples histone H3 Lys36 methylation to transcription. J Biol Chem 281(1):13-5 PMID:16286474
    • SGD Paper
    • DOI full text
    • PubMed
  • Keogh MC, et al. (2005) Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex. Cell 123(4):593-605 PMID:16286008
    • SGD Paper
    • DOI full text
    • PubMed
  • Kizer KO, et al. (2005) A novel domain in Set2 mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation. Mol Cell Biol 25(8):3305-16 PMID:15798214
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Laribee RN, et al. (2005) BUR kinase selectively regulates H3 K4 trimethylation and H2B ubiquitylation through recruitment of the PAF elongation complex. Curr Biol 15(16):1487-93 PMID:16040246
    • SGD Paper
    • DOI full text
    • PubMed
  • Morris SA, et al. (2005) Histone H3 K36 methylation is associated with transcription elongation in Schizosaccharomyces pombe. Eukaryot Cell 4(8):1446-54 PMID:16087749
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Rao B, et al. (2005) Dimethylation of histone H3 at lysine 36 demarcates regulatory and nonregulatory chromatin genome-wide. Mol Cell Biol 25(21):9447-59 PMID:16227595
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Xiao T, et al. (2005) Histone H2B ubiquitylation is associated with elongating RNA polymerase II. Mol Cell Biol 25(2):637-51 PMID:15632065
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Lee CK, et al. (2004) Evidence for nucleosome depletion at active regulatory regions genome-wide. Nat Genet 36(8):900-5 PMID:15247917
    • SGD Paper
    • DOI full text
    • PubMed
  • Xiao T, et al. (2003) Phosphorylation of RNA polymerase II CTD regulates H3 methylation in yeast. Genes Dev 17(5):654-63 PMID:12629047
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Briggs SD, et al. (2002) Gene silencing: trans-histone regulatory pathway in chromatin. Nature 418(6897):498 PMID:12152067
    • SGD Paper
    • DOI full text
    • PubMed
  • Bryk M, et al. (2002) Evidence that Set1, a factor required for methylation of histone H3, regulates rDNA silencing in S. cerevisiae by a Sir2-independent mechanism. Curr Biol 12(2):165-70 PMID:11818070
    • SGD Paper
    • DOI full text
    • PubMed
  • Strahl BD, et al. (2002) Set2 is a nucleosomal histone H3-selective methyltransferase that mediates transcriptional repression. Mol Cell Biol 22(5):1298-306 PMID:11839797
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Briggs SD, et al. (2001) Histone H3 lysine 4 methylation is mediated by Set1 and required for cell growth and rDNA silencing in Saccharomyces cerevisiae. Genes Dev 15(24):3286-95 PMID:11751634
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Strahl BD and Allis CD (2000) The language of covalent histone modifications. Nature 403(6765):41-5 PMID:10638745
    • SGD Paper
    • DOI full text
    • PubMed
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