Author: Bekiranov S

References 19 references

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Kupkova K, et al. (2024) Genome-scale chromatin binding dynamics of RNA Polymerase II general transcription machinery components. EMBO J 43(9):1799-1821 PMID:38565951
Li M, et al. (2019) A Sir2-regulated locus control region in the recombination enhancer of Saccharomyces cerevisiae specifies chromosome III structure. PLoS Genet 15(8):e1008339 PMID:31461456
Hoffman EA, et al. (2018) An Improved Method for Measuring Chromatin-binding Dynamics Using Time-dependent Formaldehyde Crosslinking. Bio Protoc 8(4) PMID:29682595
Chen X, et al. (2017) Transcriptomes of six mutants in the Sen1 pathway reveal combinatorial control of transcription termination across the Saccharomyces cerevisiae genome. PLoS Genet 13(6):e1006863 PMID:28665995
Zaidi H, et al. (2017) Second-generation method for analysis of chromatin binding with formaldehyde-cross-linking kinetics. J Biol Chem 292(47):19338-19355 PMID:28972159
Zaidi HA, et al. (2017) RNA synthesis is associated with multiple TBP-chromatin binding events. Sci Rep 7:39631 PMID:28051102
True JD, et al. (2016) The Modifier of Transcription 1 (Mot1) ATPase and Spt16 Histone Chaperone Co-regulate Transcription through Preinitiation Complex Assembly and Nucleosome Organization. J Biol Chem 291(29):15307-19 PMID:27226635
Wierman MB, et al. (2015) Functional genomic analysis reveals overlapping and distinct features of chronologically long-lived yeast populations. Aging (Albany NY) 7(3):177-94 PMID:25769345
Hoang SA and Bekiranov S (2013) The network architecture of the Saccharomyces cerevisiae genome. PLoS One 8(12):e81972 PMID:24349163
Li M, et al. (2013) Genome-wide analysis of functional sirtuin chromatin targets in yeast. Genome Biol 14(5):R48 PMID:23710766
Poorey K, et al. (2013) Measuring chromatin interaction dynamics on the second time scale at single-copy genes. Science 342(6156):369-72 PMID:24091704
Hyland EM, et al. (2011) An evolutionarily 'young' lysine residue in histone H3 attenuates transcriptional output in Saccharomyces cerevisiae. Genes Dev 25(12):1306-19 PMID:21685365
Smith SC, et al. (2011) Use of yeast chemigenomics and COXEN informatics in preclinical evaluation of anticancer agents. Neoplasia 13(1):72-80 PMID:21253455
Li M, et al. (2010) Thiamine biosynthesis in Saccharomyces cerevisiae is regulated by the NAD+-dependent histone deacetylase Hst1. Mol Cell Biol 30(13):3329-41 PMID:20439498
Matecic M, et al. (2010) A microarray-based genetic screen for yeast chronological aging factors. PLoS Genet 6(4):e1000921 PMID:20421943
Poorey K, et al. (2010) RNA synthesis precision is regulated by preinitiation complex turnover. Genome Res 20(12):1679-88 PMID:20855454
Shibata Y, et al. (2009) Yeast genome analysis identifies chromosomal translocation, gene conversion events and several sites of Ty element insertion. Nucleic Acids Res 37(19):6454-65 PMID:19710036
Wade SL, et al. (2009) The Snf1 kinase and proteasome-associated Rad23 regulate UV-responsive gene expression. EMBO J 28(19):2919-31 PMID:19680226
Mei R, et al. (2003) Probe selection for high-density oligonucleotide arrays. Proc Natl Acad Sci U S A 100(20):11237-42 PMID:14500916