CAM1 / YPL048W Overview


Standard Name
CAM1 1
Systematic Name
YPL048W
SGD ID
SGD:S000005969
Aliases
TEF3 3 , CPBP 4
Feature Type
ORF , Verified
Description
One of two isoforms of the gamma subunit of eEF1B; stimulates the release of GDP from eEF1A (Tef1p/Tef2p) post association with the ribosomal complex with eEF1Balpha subunit; nuclear protein required for transcription of MXR1; binds the MXR1 promoter in the presence of other nuclear factors; binds calcium and phospholipids 1 2 3 4
Name Description
Calcium And Membrane-binding protein 1
Comparative Info
Sequence Details

Sequence

The S. cerevisiae Reference Genome sequence is derived from laboratory strain S288C. Download DNA or protein sequence, view genomic context and coordinates. Click "Sequence Details" to view all sequence information for this locus, including that for other strains.


Summary
CAM1 is located on the left arm of chromosome XVI between DIG1 Ste12p inhibitor and SGF11 SAGA subunit; coding sequence is 1248 nucleotides long, with 6 polymorphic nucleotides, and 1 amino acid polymorphism at codon 328
Protein Details

Protein

Basic sequence-derived (length, molecular weight, isoelectric point) and experimentally-determined (median abundance, median absolute deviation) protein information. Click "Protein Details" for further information about the protein such as half-life, abundance, domains, domains shared with other proteins, protein sequence retrieval for various strains, physico-chemical properties, protein modification sites, and external identifiers for the protein.


Summary
Cam1p is 415 amino acids long, of moderate half-life; contains glutathione domains; protein abundance decreases under nitrogen starvation or treatment with DNA-damaging agents or rapamycin
Length (a.a.)
415
Mol. Weight (Da)
47091.1
Isoelectric Point
8.74
Median Abundance (molecules/cell)
23200 +/- 5549
Half-life (hr)
10.1

Alleles

Curated mutant alleles for the specified gene, listed alphabetically. Click on the allele name to open the allele page. Click "SGD search" to view all alleles in search results. Click "YeastMine" to view all alleles in YeastMine.


View all CAM1 alleles in SGD search | YeastMine

Gene Ontology Details

Gene Ontology

GO Annotations consist of four mandatory components: a gene product, a term from one of the three Gene Ontology (GO) controlled vocabularies (Molecular Function, Biological Process, and Cellular Component), a reference, and an evidence code. SGD has manually curated and high-throughput GO Annotations, both derived from the literature, as well as computational, or predicted, annotations. Click "Gene Ontology Details" to view all GO information and evidence for this locus as well as biological processes it shares with other genes.


Summary
Promoter-binding guanyl-nucleotide exchange factor that binds calcium and phospholipids, and affects transcription, ribosome biogenesis, and translational elongation and termination

View computational annotations

Cellular Component

Manually Curated

Complex

Macromolecular complex annotations are imported from the Complex Portal. These annotations have been derived from physical molecular interaction evidence extracted from the literature and cross-referenced in the entry, or by curator inference from information on homologs in closely related species or by inference from scientific background.


Phenotype Details

Phenotype

Phenotype annotations for a gene are curated single mutant phenotypes that require an observable (e.g., "cell shape"), a qualifier (e.g., "abnormal"), a mutant type (e.g., null), strain background, and a reference. In addition, annotations are classified as classical genetics or high-throughput (e.g., large scale survey, systematic mutation set). Whenever possible, allele information and additional details are provided. Click "Phenotype Details" to view all phenotype annotations and evidence for this locus as well as phenotypes it shares with other genes.


Summary
Non-essential gene; null mutants show decreased fitness and hyperosmotic stress resistance, but increased resistance to oxidative stress and to the antibiotic paromomycin
Interaction Details

Interaction

Interaction annotations are curated by BioGRID and include physical or genetic interactions observed between at least two genes. An interaction annotation is composed of the interaction type, name of the interactor, assay type (e.g., Two-Hybrid), annotation type (e.g., manual or high-throughput), and a reference, as well as other experimental details. Click "Interaction Details" to view all interaction annotations and evidence for this locus, including an interaction visualization.


Summary
Interacts genetically with loci involved in transcription and RNA metabolism; interacts physically with proteins involved in regulation of translation and organelle organization

215 total interactions for 191 unique genes

Physical Interactions

  • Affinity Capture-MS: 50
  • Affinity Capture-RNA: 5
  • Biochemical Activity: 2
  • Co-purification: 1
  • PCA: 2
  • Proximity Label-MS: 1
  • Two-hybrid: 1

Genetic Interactions

  • Dosage Growth Defect: 1
  • Dosage Rescue: 3
  • Negative Genetic: 121
  • Phenotypic Enhancement: 1
  • Phenotypic Suppression: 1
  • Positive Genetic: 24
  • Synthetic Lethality: 1
  • Synthetic Rescue: 1
Regulation Details

Regulation

The number of putative Regulators (genes that regulate it) and Targets (genes it regulates) for the given locus, based on experimental evidence. This evidence includes data generated through high-throughput techniques. Click "Regulation Details" to view all regulation annotations, shared GO enrichment among regulation Targets, and a regulator/target diagram for the locus.


Summary
CAM1 encodes a calcium phospholipid-binding transcriptional coactivator homologous to elongation factor-1 gamma (EF-1 gamma). Cam1p regulates expression of the MXR1 gene encoding methionine sulfoxide reductase A, which maintains the function of many proteins by reversing oxidation of methionine residues. Cam1p may act as a response regulator during environmental stress conditions.
Regulators
9
Targets
1
Expression Details

Expression

Expression data are derived from records contained in the Gene Expression Omnibus (GEO), and are first log2 transformed and normalized. Referenced datasets may contain one or more condition(s), and as a result there may be a greater number of conditions than datasets represented in a single clickable histogram bar. The histogram division at 0.0 separates the down-regulated (green) conditions and datasets from those that are up-regulated (red). Click "Expression Details" to view all expression annotations and details for this locus, including a visualization of genes that share a similar expression pattern.


Literature Details

Literature

All manually curated literature for the specified gene, organized into topics according to their relevance to the gene (Primary Literature, Additional Literature, or Review). Click "Literature Details" to view all literature information for this locus, including shared literature between genes.


Primary
11
Additional
18
Reviews
1

Resources