Phenotype Help

REV1 / YOR346W Phenotype

Phenotype annotations for a gene are curated single mutant phenotypes that require an observable (e.g., "cell shape"), a qualifier (e.g., "abnormal"), a mutant type (e.g., null), strain background, and a reference. In addition, annotations are classified as classical genetics or high-throughput (e.g., large scale survey, systematic mutation set). Whenever possible, allele information and additional details are provided.


Summary
Non-essential gene; null shows decreased UV resistance, decreased silencing, decreased oxidative stress resistance, decreased mutation frequency, increased accumulation of some amino acids, decreased resistance to cisplatin, oxaliplatin, psoralen, MMS, aflatoxin; null has increased replicative lifespan; heterozygous null is haploinsufficient; overexpression increases oxidative stress resistance

Annotations

A phenotype is defined as an observable (e.g., apoptosis) and a qualifier (e.g., increased). There may be more than one row with the same phenotype if that phenotype was observed in separate studies or in different conditions, strains, alleles, etc.

46 entries for 16 phenotypes


Increase the total number of rows showing on this page using the pull-down located below the table, or use the page scroll at the table's top right to browse through the table's pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table; click on the small "i" buttons located within a cell for an annotation to view further details.

PhenotypeExperiment TypeMutant InformationStrain BackgroundChemicalDetailsReference
chemical compound accumulation: abnormal
systematic mutation setnull
Allele: rev1-Δ
S288C alpha-amino acidDetails: Significantly altered free amino acid profile (X^2- test adjusted p < 0.01), showing 4 simultaneous amino acid changes (Z-test, adjusted p < 0.01)
Mülleder M, et al. (2016) PMID:27693354
chemical compound accumulation: increased
systematic mutation setnull
Allele: rev1-Δ
S288C alanineMülleder M, et al. (2016) PMID:27693354
chemical compound accumulation: increased
systematic mutation setnull
Allele: rev1-Δ
S288C valineMülleder M, et al. (2016) PMID:27693354
chemical compound accumulation: increased
systematic mutation setnull
Allele: rev1-Δ
S288C threonineMülleder M, et al. (2016) PMID:27693354
chemical compound accumulation: increased
systematic mutation setnull
Allele: rev1-Δ
S288C isoleucineMülleder M, et al. (2016) PMID:27693354
competitive fitness: decreased
competitive growth

fitness profiling using complete deletion alleles

null
Allele: rev1-Δ
S288CMedia: minimal medium
Details: Relative fitness score: 0.993
Breslow DK, et al. (2008) PMID:18622397
haploinsufficient
heterozygous diploid, competitive growth

genome-wide fitness profiling

null
Allele: rev1-Δ
S288CMedia: turbidostat growth in FPM medium
Details: Relative growth score: -0.0052
Pir P, et al. (2012) PMID:22244311
heat sensitivity: decreased
systematic mutation set

high throughput heat ramp cell death assay

null
Allele: rev1-Δ
S288CTemperature: elevated temperature
Details: ramp temperature from ambient to 30 deg C immediately, hold 1 min at 30 deg C, ramp temperature from 30 deg C to 62 deg C over 20 min, return to ambient
Teng X, et al. (2011) PMID:21814286
mutation frequency: decreased
classical geneticsreduction of functionOther 4-nitroquinoline N-oxidePrakash L (1976) PMID:17248715
mutation frequency: decreased
classical geneticsnull
Allele: rev1-Δ
W303Details: significant reduction in de novo mutation rate in URA3, downstream of homopolymeric run of 14 guanines (G14)
McDonald MJ, et al. (2016) PMID:27386516
Showing 1 to 10 of 46 entries

Shared Phenotypes

This diagram displays phenotype observables (purple squares) that are shared between the given gene (yellow circle) and other genes (gray circles) based on the number of phenotype observables shared (adjustable using the slider at the bottom).


Reset

Click on a gene or phenotype observable name to go to its specific page within SGD; drag any of the gene or observable objects around within the visualization for easier viewing; click “Reset” to automatically redraw the diagram; filter the genes that share observable terms with the given gene by the number of terms they share by clicking anywhere on the slider bar or dragging the tab to the desired filter number.


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