AboutBlogDownloadExploreHelpGet Data
Email Us Mastodon BlueSky Facebook LinkedIn YouTube
Saccharomyces Genome Database
  • Saccharomyces Genome Database
    Saccharomyces Genome Database
  • Menu
  • Analyze
    • Gene Lists
    • BLAST
    • Fungal BLAST
    • GO Term Finder
    • GO Slim Mapper
    • Pattern Matching
    • Design Primers
    • Restriction Site Mapper
  • Sequence
    • Download
    • Genome Browser
    • BLAST
    • Fungal BLAST
    • Gene/Sequence Resources
    • Reference Genome
      • Download Genome
      • Genome Snapshot
      • Chromosome History
      • Systematic Sequencing Table
      • Original Sequence Papers
    • Strains and Species
      • Variant Viewer
      • Align Strain Sequences
    • Resources
      • UniProtKB
      • InterPro (EBI)
      • HomoloGene (NCBI)
      • YGOB (Trinity College)
      • AlphaFold
  • Function
    • Gene Ontology
      • GO Term Finder
      • GO Slim Mapper
      • GO Slim Mapping File
    • Expression
    • Biochemical Pathways
    • Phenotypes
      • Browse All Phenotypes
    • Interactions
    • YeastGFP
    • Resources
      • GO Consortium
      • BioGRID (U. Toronto)
  • Literature
    • Full-text Search
    • New Yeast Papers
    • YeastBook
    • Resources
      • PubMed (NCBI)
      • PubMed Central (NCBI)
      • Google Scholar
  • Community
    • Community Forum
    • Colleague Information
      • Find a Colleague
      • Add or Update Info
      • Find a Yeast Lab
    • Education
    • Meetings
    • Nomenclature
      • Submit a Gene Registration
      • Gene Registry
      • Nomenclature Conventions
    • Methods and Reagents
      • Strains
    • Historical Data
      • Physical & Genetic Maps
      • Genetic Maps
      • Genetic Loci
      • ORFMap Chromosomes
      • Sequence
    • Submit Data
    • API
  • Info & Downloads
    • About
    • Blog
    • Downloads
    • Site Map
    • Help
  • Author: Smith JS
  • References

Author: Smith JS


References 45 references


No citations for this author.

Download References (.nbib)

  • Dinda M, et al. (2023) Fob1-dependent condensin recruitment and loop extrusion on yeast chromosome III. PLoS Genet 19(4):e1010705 PMID:37058545
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Ghaddar A, et al. (2023) Increased alcohol dehydrogenase 1 activity promotes longevity. Curr Biol 33(6):1036-1046.e6 PMID:36805847
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Smith JS (2022) The long and short of rDNA and yeast replicative aging. Proc Natl Acad Sci U S A 119(23):e2205124119 PMID:35658078
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Enriquez-Hesles E, et al. (2021) A cell-nonautonomous mechanism of yeast chronological aging regulated by caloric restriction and one-carbon metabolism. J Biol Chem 296:100125 PMID:33243834
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Fine RD, et al. (2019) Depletion of Limiting rDNA Structural Complexes Triggers Chromosomal Instability and Replicative Aging of Saccharomyces cerevisiae. Genetics 212(1):75-91 PMID:30842210
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Li M, et al. (2019) A Sir2-regulated locus control region in the recombination enhancer of Saccharomyces cerevisiae specifies chromosome III structure. PLoS Genet 15(8):e1008339 PMID:31461456
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Kharel Y, et al. (2018) Saccharomyces cerevisiae as a platform for assessing sphingolipid lipid kinase inhibitors. PLoS One 13(4):e0192179 PMID:29672528
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Maqani N, et al. (2018) Spontaneous mutations in CYC8 and MIG1 suppress the short chronological lifespan of budding yeast lacking SNF1/AMPK. Microb Cell 5(5):233-248 PMID:29796388
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Wierman MB, et al. (2017) Caloric Restriction Extends Yeast Chronological Life Span by Optimizing the Snf1 (AMPK) Signaling Pathway. Mol Cell Biol 37(13) PMID:28373292
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Buck SW, et al. (2016) RNA Polymerase I and Fob1 contributions to transcriptional silencing at the yeast rDNA locus. Nucleic Acids Res 44(13):6173-84 PMID:27060141
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Gartenberg MR and Smith JS (2016) The Nuts and Bolts of Transcriptionally Silent Chromatin in Saccharomyces cerevisiae. Genetics 203(4):1563-99 PMID:27516616
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Wierman MB, et al. (2015) Functional genomic analysis reveals overlapping and distinct features of chronologically long-lived yeast populations. Aging (Albany NY) 7(3):177-94 PMID:25769345
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Johnson JM, et al. (2014) A user's guide to the ribosomal DNA in Saccharomyces cerevisiae. Methods Mol Biol 1205:303-28 PMID:25213252
    • SGD Paper
    • DOI full text
    • PubMed
  • Wierman MB and Smith JS (2014) Yeast sirtuins and the regulation of aging. FEMS Yeast Res 14(1):73-88 PMID:24164855
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Johnson JM, et al. (2013) Rpd3- and spt16-mediated nucleosome assembly and transcriptional regulation on yeast ribosomal DNA genes. Mol Cell Biol 33(14):2748-59 PMID:23689130
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Li M, et al. (2013) Genome-wide analysis of functional sirtuin chromatin targets in yeast. Genome Biol 14(5):R48 PMID:23710766
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • McClure JM, et al. (2012) Isonicotinamide enhances Sir2 protein-mediated silencing and longevity in yeast by raising intracellular NAD+ concentration. J Biol Chem 287(25):20957-66 PMID:22539348
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • French SL, et al. (2011) Distinguishing the roles of Topoisomerases I and II in relief of transcription-induced torsional stress in yeast rRNA genes. Mol Cell Biol 31(3):482-94 PMID:21098118
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Smith JS, et al. (2011) Rudimentary G-quadruplex-based telomere capping in Saccharomyces cerevisiae. Nat Struct Mol Biol 18(4):478-85 PMID:21399640
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Li M, et al. (2010) Thiamine biosynthesis in Saccharomyces cerevisiae is regulated by the NAD+-dependent histone deacetylase Hst1. Mol Cell Biol 30(13):3329-41 PMID:20439498
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Matecic M, et al. (2010) A microarray-based genetic screen for yeast chronological aging factors. PLoS Genet 6(4):e1000921 PMID:20421943
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Mitchell MT, et al. (2010) Cdc13 N-terminal dimerization, DNA binding, and telomere length regulation. Mol Cell Biol 30(22):5325-34 PMID:20837709
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Biswas M, et al. (2009) Limiting the extent of the RDN1 heterochromatin domain by a silencing barrier and Sir2 protein levels in Saccharomyces cerevisiae. Mol Cell Biol 29(10):2889-98 PMID:19289503
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Hontz RD, et al. (2009) Genetic identification of factors that modulate ribosomal DNA transcription in Saccharomyces cerevisiae. Genetics 182(1):105-19 PMID:19270272
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Smith DL, et al. (2009) Calorie restriction effects on silencing and recombination at the yeast rDNA. Aging Cell 8(6):633-42 PMID:19732044
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Hontz RD, et al. (2008) Transcription of multiple yeast ribosomal DNA genes requires targeting of UAF to the promoter by Uaf30. Mol Cell Biol 28(21):6709-19 PMID:18765638
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Johnson JE, et al. (2008) In vivo veritas: using yeast to probe the biological functions of G-quadruplexes. Biochimie 90(8):1250-63 PMID:18331848
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • McClure JM, et al. (2008) Pnc1p-mediated nicotinamide clearance modifies the epigenetic properties of rDNA silencing in Saccharomyces cerevisiae. Genetics 180(2):797-810 PMID:18780747
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Belenky P, et al. (2007) Nicotinamide riboside promotes Sir2 silencing and extends lifespan via Nrk and Urh1/Pnp1/Meu1 pathways to NAD+. Cell 129(3):473-84 PMID:17482543
    • SGD Paper
    • DOI full text
    • PubMed
  • Dasgupta A, et al. (2007) Regulation of rRNA synthesis by TATA-binding protein-associated factor Mot1. Mol Cell Biol 27(8):2886-96 PMID:17296733
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Smith DL, et al. (2007) Calorie restriction extends the chronological lifespan of Saccharomyces cerevisiae independently of the Sirtuins. Aging Cell 6(5):649-62 PMID:17711561
    • SGD Paper
    • DOI full text
    • PubMed
  • Weinberger M, et al. (2007) DNA replication stress is a determinant of chronological lifespan in budding yeast. PLoS One 2(8):e748 PMID:17710147
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Buck SW, et al. (2004) Diversity in the Sir2 family of protein deacetylases. J Leukoc Biol 75(6):939-50 PMID:14742637
    • SGD Paper
    • DOI full text
    • PubMed
  • Dasgupta A, et al. (2004) Sir Antagonist 1 (San1) is a ubiquitin ligase. J Biol Chem 279(26):26830-8 PMID:15078868
    • SGD Paper
    • DOI full text
    • PubMed
    • Reference supplement
  • Gallo CM, et al. (2004) Nicotinamide clearance by Pnc1 directly regulates Sir2-mediated silencing and longevity. Mol Cell Biol 24(3):1301-12 PMID:14729974
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Buck SW, et al. (2002) RNA polymerase I propagates unidirectional spreading of rDNA silent chromatin. Cell 111(7):1003-14 PMID:12507427
    • SGD Paper
    • DOI full text
    • PubMed
  • Sandmeier JJ, et al. (2002) Telomeric and rDNA silencing in Saccharomyces cerevisiae are dependent on a nuclear NAD(+) salvage pathway. Genetics 160(3):877-89 PMID:11901108
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Sandmeier JJ, et al. (2002) RPD3 is required for the inactivation of yeast ribosomal DNA genes in stationary phase. EMBO J 21(18):4959-68 PMID:12234935
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Smith JS, et al. (2002) SIR2 family of NAD(+)-dependent protein deacetylases. Methods Enzymol 353:282-300 PMID:12078503
    • SGD Paper
    • DOI full text
    • PubMed
  • Loewith R, et al. (2001) Pho23 is associated with the Rpd3 histone deacetylase and is required for its normal function in regulation of gene expression and silencing in Saccharomyces cerevisiae. J Biol Chem 276(26):24068-74 PMID:11306585
    • SGD Paper
    • DOI full text
    • PubMed
  • Smith JS and Boeke JD (2001) Transcription. Is S phase important for transcriptional silencing? Science 291(5504):608-9 PMID:11158666
    • SGD Paper
    • DOI full text
    • PubMed
  • Smith JS, et al. (2000) A phylogenetically conserved NAD+-dependent protein deacetylase activity in the Sir2 protein family. Proc Natl Acad Sci U S A 97(12):6658-63 PMID:10841563
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Smith JS, et al. (1999) A genetic screen for ribosomal DNA silencing defects identifies multiple DNA replication and chromatin-modulating factors. Mol Cell Biol 19(4):3184-97 PMID:10082585
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Smith JS, et al. (1998) Distribution of a limited Sir2 protein pool regulates the strength of yeast rDNA silencing and is modulated by Sir4p. Genetics 149(3):1205-19 PMID:9649515
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Smith JS and Boeke JD (1997) An unusual form of transcriptional silencing in yeast ribosomal DNA. Genes Dev 11(2):241-54 PMID:9009206
    • SGD Paper
    • DOI full text
    • PubMed
  • SGD
  • About
  • Blog
  • Help
  • Privacy Policy
  • Creative Commons License
© Stanford University, Stanford, CA 94305.
Back to Top