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  • Author: Mizushima N
  • References

Author: Mizushima N


References 55 references


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  • Sakamaki JI and Mizushima N (2023) Protocol to purify and detect ubiquitinated phospholipids in budding yeast and human cell lines. STAR Protoc 4(1):101935 PMID:36520633
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  • Sakamaki JI and Mizushima N (2023) Conjugation of the ubiquitin family proteins to phospholipids. Autophagy 19(4):1361-1362 PMID:36095076
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  • Shimasawa M, et al. (2023) The pH-sensing Rim101 pathway regulates cell size in budding yeast. J Biol Chem 299(3):102973 PMID:36738789
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  • Sakamaki JI, et al. (2022) Ubiquitination of phosphatidylethanolamine in organellar membranes. Mol Cell 82(19):3677-3692.e11 PMID:36044902
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  • Zhang S, et al. (2022) Evolutionary diversification of the autophagy-related ubiquitin-like conjugation systems. Autophagy 18(12):2969-2984 PMID:35427200
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  • Kuma A, et al. (2017) Autophagy-monitoring and autophagy-deficient mice. Autophagy 13(10):1619-1628 PMID:28820286
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  • Mizushima N (2017) The exponential growth of autophagy-related research: from the humble yeast to the Nobel Prize. FEBS Lett 591(5):681-689 PMID:28186333
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  • Noda NN and Mizushima N (2016) Atg101: Not Just an Accessory Subunit in the Autophagy-initiation Complex. Cell Struct Funct 41(1):13-20 PMID:26754330
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  • Suzuki H, et al. (2015) Structure of the Atg101-Atg13 complex reveals essential roles of Atg101 in autophagy initiation. Nat Struct Mol Biol 22(7):572-80 PMID:26030876
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  • Shen HM and Mizushima N (2014) At the end of the autophagic road: an emerging understanding of lysosomal functions in autophagy. Trends Biochem Sci 39(2):61-71 PMID:24369758
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  • Onoue K, et al. (2013) Fis1 acts as a mitochondrial recruitment factor for TBC1D15 that is involved in regulation of mitochondrial morphology. J Cell Sci 126(Pt 1):176-85 PMID:23077178
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  • Saitsu H, et al. (2013) De novo mutations in the autophagy gene WDR45 cause static encephalopathy of childhood with neurodegeneration in adulthood. Nat Genet 45(4):445-9, 449e1 PMID:23435086
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  • Mizushima N, et al. (2011) The role of Atg proteins in autophagosome formation. Annu Rev Cell Dev Biol 27:107-32 PMID:21801009
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  • Kuma A and Mizushima N (2010) Physiological role of autophagy as an intracellular recycling system: with an emphasis on nutrient metabolism. Semin Cell Dev Biol 21(7):683-90 PMID:20223289
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  • Mizushima N (2010) Autophagy. FEBS Lett 584(7):1279 PMID:20184884
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  • Mizushima N (2010) The role of the Atg1/ULK1 complex in autophagy regulation. Curr Opin Cell Biol 22(2):132-9 PMID:20056399
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  • Hara T and Mizushima N (2009) Role of ULK-FIP200 complex in mammalian autophagy: FIP200, a counterpart of yeast Atg17? Autophagy 5(1):85-7 PMID:18981720
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  • Hosokawa N, et al. (2009) Atg101, a novel mammalian autophagy protein interacting with Atg13. Autophagy 5(7):973-9 PMID:19597335
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  • Ishihara N and Mizushima N (2009) A receptor for eating mitochondria. Dev Cell 17(1):1-2 PMID:19619484
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  • Itakura E and Mizushima N (2009) Atg14 and UVRAG: mutually exclusive subunits of mammalian Beclin 1-PI3K complexes. Autophagy 5(4):534-6 PMID:19223761
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  • Satoo K, et al. (2009) The structure of Atg4B-LC3 complex reveals the mechanism of LC3 processing and delipidation during autophagy. EMBO J 28(9):1341-50 PMID:19322194
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  • Itakura E, et al. (2008) Beclin 1 forms two distinct phosphatidylinositol 3-kinase complexes with mammalian Atg14 and UVRAG. Mol Biol Cell 19(12):5360-72 PMID:18843052
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  • Klionsky DJ, et al. (2008) Guidelines for the use and interpretation of assays for monitoring autophagy in higher eukaryotes. Autophagy 4(2):151-75 PMID:18188003
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  • Kuma A, et al. (2007) LC3, an autophagosome marker, can be incorporated into protein aggregates independent of autophagy: caution in the interpretation of LC3 localization. Autophagy 3(4):323-8 PMID:17387262
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  • Mariño G, et al. (2007) Tissue-specific autophagy alterations and increased tumorigenesis in mice deficient in Atg4C/autophagin-3. J Biol Chem 282(25):18573-18583 PMID:17442669
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  • Mizushima N (2007) Autophagy: process and function. Genes Dev 21(22):2861-73 PMID:18006683
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  • Satoo K, et al. (2007) Crystallization and preliminary crystallographic analysis of human Atg4B-LC3 complex. Acta Crystallogr Sect F Struct Biol Cryst Commun 63(Pt 2):99-102 PMID:17277449
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  • Komatsu M, et al. (2005) Impairment of starvation-induced and constitutive autophagy in Atg7-deficient mice. J Cell Biol 169(3):425-34 PMID:15866887
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  • Mizushima N (2005) The pleiotropic role of autophagy: from protein metabolism to bactericide. Cell Death Differ 12 Suppl 2:1535-41 PMID:16247501
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  • Ichimura T, et al. (2004) Transcriptomic and proteomic analysis of a 14-3-3 gene-deficient yeast. Biochemistry 43(20):6149-58 PMID:15147199
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  • Kabeya Y, et al. (2004) LC3, GABARAP and GATE16 localize to autophagosomal membrane depending on form-II formation. J Cell Sci 117(Pt 13):2805-12 PMID:15169837
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  • Mizushima N (2004) Methods for monitoring autophagy. Int J Biochem Cell Biol 36(12):2491-502 PMID:15325587
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  • Mizushima N, et al. (2004) In vivo analysis of autophagy in response to nutrient starvation using transgenic mice expressing a fluorescent autophagosome marker. Mol Biol Cell 15(3):1101-11 PMID:14699058
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  • Ohsumi Y and Mizushima N (2004) Two ubiquitin-like conjugation systems essential for autophagy. Semin Cell Dev Biol 15(2):231-6 PMID:15209383
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  • Sugawara K, et al. (2004) The crystal structure of microtubule-associated protein light chain 3, a mammalian homologue of Saccharomyces cerevisiae Atg8. Genes Cells 9(7):611-8 PMID:15265004
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  • Mizushima N, et al. (2003) Mouse Apg16L, a novel WD-repeat protein, targets to the autophagic isolation membrane with the Apg12-Apg5 conjugate. J Cell Sci 116(Pt 9):1679-88 PMID:12665549
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  • Mizushima N, et al. (2003) Role of the Apg12 conjugation system in mammalian autophagy. Int J Biochem Cell Biol 35(5):553-61 PMID:12672448
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  • Sugawara K, et al. (2003) Crystallization and preliminary X-ray analysis of LC3-I. Acta Crystallogr D Biol Crystallogr 59(Pt 8):1464-5 PMID:12876352
    • SGD Paper
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  • Kuma A, et al. (2002) Formation of the approximately 350-kDa Apg12-Apg5.Apg16 multimeric complex, mediated by Apg16 oligomerization, is essential for autophagy in yeast. J Biol Chem 277(21):18619-25 PMID:11897782
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  • Mizushima N (2002) [Molecular mechanism of autophagy: the role of the Apg12 conjugation system]. Seikagaku 74(7):523-37 PMID:12187785
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  • Mizushima N, et al. (2002) Autophagosome formation in mammalian cells. Cell Struct Funct 27(6):421-9 PMID:12576635
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  • Mizushima N, et al. (2002) Mouse Apg10 as an Apg12-conjugating enzyme: analysis by the conjugation-mediated yeast two-hybrid method. FEBS Lett 532(3):450-4 PMID:12482611
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  • Mizushima N, et al. (2001) Dissection of autophagosome formation using Apg5-deficient mouse embryonic stem cells. J Cell Biol 152(4):657-68 PMID:11266458
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  • Suzuki K, et al. (2001) The pre-autophagosomal structure organized by concerted functions of APG genes is essential for autophagosome formation. EMBO J 20(21):5971-81 PMID:11689437
    • SGD Paper
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  • Furukawa K, et al. (2000) A protein conjugation system in yeast with homology to biosynthetic enzyme reaction of prokaryotes. J Biol Chem 275(11):7462-5 PMID:10713047
    • SGD Paper
    • DOI full text
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  • George MD, et al. (2000) Apg5p functions in the sequestration step in the cytoplasm-to-vacuole targeting and macroautophagy pathways. Mol Biol Cell 11(3):969-82 PMID:10712513
    • SGD Paper
    • DOI full text
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  • Ichimura Y, et al. (2000) A ubiquitin-like system mediates protein lipidation. Nature 408(6811):488-92 PMID:11100732
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  • Kabeya Y, et al. (2000) LC3, a mammalian homologue of yeast Apg8p, is localized in autophagosome membranes after processing. EMBO J 19(21):5720-8 PMID:11060023
    • SGD Paper
    • DOI full text
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  • Kirisako T, et al. (2000) The reversible modification regulates the membrane-binding state of Apg8/Aut7 essential for autophagy and the cytoplasm to vacuole targeting pathway. J Cell Biol 151(2):263-76 PMID:11038174
    • SGD Paper
    • DOI full text
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  • Yoshimori T, et al. (2000) The mouse SKD1, a homologue of yeast Vps4p, is required for normal endosomal trafficking and morphology in mammalian cells. Mol Biol Cell 11(2):747-63 PMID:10679028
    • SGD Paper
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  • Mizushima N, et al. (1999) Apg16p is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway. EMBO J 18(14):3888-96 PMID:10406794
    • SGD Paper
    • DOI full text
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  • Shintani T, et al. (1999) Apg10p, a novel protein-conjugating enzyme essential for autophagy in yeast. EMBO J 18(19):5234-41 PMID:10508157
    • SGD Paper
    • DOI full text
    • PMC full text
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  • Tanida I, et al. (1999) Apg7p/Cvt2p: A novel protein-activating enzyme essential for autophagy. Mol Biol Cell 10(5):1367-79 PMID:10233150
    • SGD Paper
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  • Mizushima N, et al. (1998) A new protein conjugation system in human. The counterpart of the yeast Apg12p conjugation system essential for autophagy. J Biol Chem 273(51):33889-92 PMID:9852036
    • SGD Paper
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  • Mizushima N, et al. (1998) A protein conjugation system essential for autophagy. Nature 395(6700):395-8 PMID:9759731
    • SGD Paper
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