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  • Author: Mitra S
  • References

Author: Mitra S


References 16 references


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  • Mitra S and Hartemink AJ (2025) Inferring differential protein binding from time-series chromatin accessibility data. Bioinform Adv 5(1):vbaf080 PMID:40297777
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  • Mitra S, et al. (2021) RoboCOP: jointly computing chromatin occupancy profiles for numerous factors from chromatin accessibility data. Nucleic Acids Res 49(14):7925-7938 PMID:34255854
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  • Tran TQ, et al. (2021) Linking the dynamics of chromatin occupancy and transcription with predictive models. Genome Res 31(6):1035-1046 PMID:33893157
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  • Gorby C, et al. (2020) Engineered IL-10 variants elicit potent immunomodulatory effects at low ligand doses. Sci Signal 13(649) PMID:32934073
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  • Mitra S, et al. (2020) RoboCOP: Multivariate State Space Model Integrating Epigenomic Accessibility Data to Elucidate Genome-Wide Chromatin Occupancy. Res Comput Mol Biol 12074:136-151 PMID:34386808
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  • Paul SS, et al. (2015) Subtle Change in the Charge Distribution of Surface Residues May Affect the Secondary Functions of Cytochrome c. J Biol Chem 290(23):14476-90 PMID:25873393
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  • Roy J, et al. (2015) Hsp70 clears misfolded kinases that partitioned into distinct quality-control compartments. Mol Biol Cell 26(9):1583-600 PMID:25739454
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  • Das R, et al. (2012) Extracting gene-gene interactions through curve fitting. IEEE Trans Nanobioscience 11(4):402-9 PMID:22997274
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  • Chabrier-Roselló Y, et al. (2010) Inhibition of electron transport chain assembly and function promotes photodynamic killing of Candida. J Photochem Photobiol B 99(3):117-25 PMID:20381373
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  • Haldar S, et al. (2010) Role of protein stabilizers on the conformation of the unfolded state of cytochrome c and its early folding kinetics: investigation at single molecular resolution. J Biol Chem 285(33):25314-23 PMID:20538585
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  • Mitra S, et al. (2010) A deeply divergent phosphoglucomutase (PGM) of Giardia lamblia has both PGM and phosphomannomutase activities. Glycobiology 20(10):1233-40 PMID:20507884
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  • Ribar B, et al. (2004) The major role of human AP-endonuclease homolog Apn2 in repair of abasic sites in Schizosaccharomyces pombe. Nucleic Acids Res 32(1):115-26 PMID:14704348
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  • Hazra TK, et al. (2000) Characterization of a novel 8-oxoguanine-DNA glycosylase activity in Escherichia coli and identification of the enzyme as endonuclease VIII. J Biol Chem 275(36):27762-7 PMID:10862773
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  • Mol CD, et al. (2000) DNA-bound structures and mutants reveal abasic DNA binding by APE1 and DNA repair coordination [corrected]. Nature 403(6768):451-6 PMID:10667800
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  • Nanduri J, et al. (1999) An unexpected link between the secretory path and the organization of the nucleus. J Biol Chem 274(47):33785-9 PMID:10559272
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  • Johnson RE, et al. (1998) Identification of APN2, the Saccharomyces cerevisiae homolog of the major human AP endonuclease HAP1, and its role in the repair of abasic sites. Genes Dev 12(19):3137-43 PMID:9765213
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