AboutBlogDownloadExploreHelpGet Data
Email Us Mastodon BlueSky Facebook LinkedIn YouTube
Saccharomyces Genome Database
  • Saccharomyces Genome Database
    Saccharomyces Genome Database
  • Menu
  • Analyze
    • Gene Lists
    • BLAST
    • Fungal BLAST
    • GO Term Finder
    • GO Slim Mapper
    • Pattern Matching
    • Design Primers
    • Restriction Site Mapper
  • Sequence
    • Download
    • Genome Browser
    • BLAST
    • Fungal BLAST
    • Gene/Sequence Resources
    • Reference Genome
      • Download Genome
      • Genome Snapshot
      • Chromosome History
      • Systematic Sequencing Table
      • Original Sequence Papers
    • Strains and Species
      • Variant Viewer
      • Align Strain Sequences
    • Resources
      • UniProtKB
      • InterPro (EBI)
      • HomoloGene (NCBI)
      • YGOB (Trinity College)
      • AlphaFold
  • Function
    • Gene Ontology
      • GO Term Finder
      • GO Slim Mapper
      • GO Slim Mapping File
    • Expression
    • Biochemical Pathways
    • Phenotypes
      • Browse All Phenotypes
    • Interactions
    • YeastGFP
    • Resources
      • GO Consortium
      • BioGRID (U. Toronto)
  • Literature
    • Full-text Search
    • New Yeast Papers
    • YeastBook
    • Resources
      • PubMed (NCBI)
      • PubMed Central (NCBI)
      • Google Scholar
  • Community
    • Community Forum
    • Colleague Information
      • Find a Colleague
      • Add or Update Info
      • Find a Yeast Lab
    • Education
    • Meetings
    • Nomenclature
      • Submit a Gene Registration
      • Gene Registry
      • Nomenclature Conventions
    • Methods and Reagents
      • Strains
    • Historical Data
      • Physical & Genetic Maps
      • Genetic Maps
      • Genetic Loci
      • ORFMap Chromosomes
      • Sequence
    • Submit Data
    • API
  • Info & Downloads
    • About
    • Blog
    • Downloads
    • Site Map
    • Help
  • Author: Araki H
  • References

Author: Araki H


References 71 references


No citations for this author.

Download References (.nbib)

  • Murayama Y, et al. (2024) Coordination of cohesin and DNA replication observed with purified proteins. Nature 626(7999):653-660 PMID:38267580
    • SGD Paper
    • DOI full text
    • PubMed
  • Dmowski M, et al. (2022) Increased contribution of DNA polymerase delta to the leading strand replication in yeast with an impaired CMG helicase complex. DNA Repair (Amst) 110:103272 PMID:35038632
    • SGD Paper
    • DOI full text
    • PubMed
  • Denkiewicz-Kruk M, et al. (2020) Recombination and Pol ζ Rescue Defective DNA Replication upon Impaired CMG Helicase-Pol ε Interaction. Int J Mol Sci 21(24) PMID:33322195
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Hizume K, et al. (2018) DNA polymerase ε-dependent modulation of the pausing property of the CMG helicase at the barrier. Genes Dev 32(19-20):1315-1320 PMID:30232092
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Yamamoto K, et al. (2018) CDK phosphorylation regulates Mcm3 degradation in budding yeast. Biochem Biophys Res Commun 506(3):680-684 PMID:30376991
    • SGD Paper
    • DOI full text
    • PubMed
  • Yamamoto K, et al. (2018) TORC1 signaling regulates DNA replication via DNA replication protein levels. Biochem Biophys Res Commun 505(4):1128-1133 PMID:30316513
    • SGD Paper
    • DOI full text
    • PubMed
  • Hizume K, et al. (2017) Flexible DNA Path in the MCM Double Hexamer Loaded on DNA. Biochemistry 56(19):2435-2445 PMID:28459551
    • SGD Paper
    • DOI full text
    • PubMed
  • Miyazawa-Onami M, et al. (2017) Pre-initiation complex assembly functions as a molecular switch that splits the Mcm2-7 double hexamer. EMBO Rep 18(10):1752-1761 PMID:28818838
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Okimoto H, et al. (2016) Conserved interaction of Ctf18-RFC with DNA polymerase ε is critical for maintenance of genome stability in Saccharomyces cerevisiae. Genes Cells 21(5):482-91 PMID:26987677
    • SGD Paper
    • DOI full text
    • PubMed
  • Garbacz M, et al. (2015) Fidelity consequences of the impaired interaction between DNA polymerase epsilon and the GINS complex. DNA Repair (Amst) 29:23-35 PMID:25758782
    • SGD Paper
    • DOI full text
    • PubMed
  • Itou H, et al. (2015) The quaternary structure of the eukaryotic DNA replication proteins Sld7 and Sld3. Acta Crystallogr D Biol Crystallogr 71(Pt 8):1649-56 PMID:26249346
    • SGD Paper
    • DOI full text
    • PubMed
  • Tanaka S, et al. (2015) iAID: an improved auxin-inducible degron system for the construction of a 'tight' conditional mutant in the budding yeast Saccharomyces cerevisiae. Yeast 32(8):567-81 PMID:26081484
    • SGD Paper
    • DOI full text
    • PubMed
  • Itou H, et al. (2014) Crystal structure of the homology domain of the eukaryotic DNA replication proteins Sld3/Treslin. Structure 22(9):1341-1347 PMID:25126958
    • SGD Paper
    • DOI full text
    • PubMed
  • Hizume K, et al. (2013) Concerted interaction between origin recognition complex (ORC), nucleosomes and replication origin DNA ensures stable ORC-origin binding. Genes Cells 18(9):764-79 PMID:23795651
    • SGD Paper
    • DOI full text
    • PubMed
  • Natsume T, et al. (2013) Kinetochores coordinate pericentromeric cohesion and early DNA replication by Cdc7-Dbf4 kinase recruitment. Mol Cell 50(5):661-74 PMID:23746350
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Tanaka S and Araki H (2013) Helicase activation and establishment of replication forks at chromosomal origins of replication. Cold Spring Harb Perspect Biol 5(12):a010371 PMID:23881938
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Tanaka S, et al. (2013) Efficient initiation of DNA replication in eukaryotes requires Dpb11/TopBP1-GINS interaction. Mol Cell Biol 33(13):2614-22 PMID:23629628
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Araki H (2011) Initiation of chromosomal DNA replication in eukaryotic cells; contribution of yeast genetics to the elucidation. Genes Genet Syst 86(3):141-9 PMID:21952204
    • SGD Paper
    • DOI full text
    • PubMed
  • Tanaka S and Araki H (2011) Multiple regulatory mechanisms to inhibit untimely initiation of DNA replication are important for stable genome maintenance. PLoS Genet 7(6):e1002136 PMID:21698130
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Tanaka S, et al. (2011) Origin association of Sld3, Sld7, and Cdc45 proteins is a key step for determination of origin-firing timing. Curr Biol 21(24):2055-63 PMID:22169533
    • SGD Paper
    • DOI full text
    • PubMed
  • Tanaka T, et al. (2011) Sld7, an Sld3-associated protein required for efficient chromosomal DNA replication in budding yeast. EMBO J 30(10):2019-30 PMID:21487389
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Araki H (2010) Cyclin-dependent kinase-dependent initiation of chromosomal DNA replication. Curr Opin Cell Biol 22(6):766-71 PMID:20728327
    • SGD Paper
    • DOI full text
    • PubMed
  • Araki H (2010) Regulatory mechanism of the initiation step of DNA replication by CDK in budding yeast. Biochim Biophys Acta 1804(3):520-3 PMID:19879979
    • SGD Paper
    • DOI full text
    • PubMed
  • Muramatsu S, et al. (2010) CDK-dependent complex formation between replication proteins Dpb11, Sld2, Pol (epsilon}, and GINS in budding yeast. Genes Dev 24(6):602-12 PMID:20231317
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Tanaka S and Araki H (2010) Regulation of the initiation step of DNA replication by cyclin-dependent kinases. Chromosoma 119(6):565-74 PMID:20686781
    • SGD Paper
    • DOI full text
    • PubMed
  • Araki H (2009) [Complex formation of replication proteins to initiate eukaryotic chromosome DNA replication]. Tanpakushitsu Kakusan Koso 54(4 Suppl):350-5 PMID:21089474
    • SGD Paper
    • PubMed
  • Komata M, et al. (2009) The direct binding of Mrc1, a checkpoint mediator, to Mcm6, a replication helicase, is essential for the replication checkpoint against methyl methanesulfonate-induced stress. Mol Cell Biol 29(18):5008-19 PMID:19620285
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Tanaka H, et al. (2009) Ctf4 coordinates the progression of helicase and DNA polymerase alpha. Genes Cells 14(7):807-20 PMID:19496828
    • SGD Paper
    • DOI full text
    • PubMed
  • Tanaka S, et al. (2007) The role of CDK in the initiation step of DNA replication in eukaryotes. Cell Div 2:16 PMID:17547773
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Tanaka S, et al. (2007) CDK-dependent phosphorylation of Sld2 and Sld3 initiates DNA replication in budding yeast. Nature 445(7125):328-32 PMID:17167415
    • SGD Paper
    • DOI full text
    • PubMed
  • Seki T, et al. (2006) GINS is a DNA polymerase epsilon accessory factor during chromosomal DNA replication in budding yeast. J Biol Chem 281(30):21422-21432 PMID:16714283
    • SGD Paper
    • DOI full text
    • PubMed
  • Tak YS, et al. (2006) A CDK-catalysed regulatory phosphorylation for formation of the DNA replication complex Sld2-Dpb11. EMBO J 25(9):1987-96 PMID:16619031
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Ohya Y, et al. (2005) High-dimensional and large-scale phenotyping of yeast mutants. Proc Natl Acad Sci U S A 102(52):19015-20 PMID:16365294
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Iida T and Araki H (2004) Noncompetitive counteractions of DNA polymerase epsilon and ISW2/yCHRAC for epigenetic inheritance of telomere position effect in Saccharomyces cerevisiae. Mol Cell Biol 24(1):217-27 PMID:14673157
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Kubota Y, et al. (2003) A novel ring-like complex of Xenopus proteins essential for the initiation of DNA replication. Genes Dev 17(9):1141-52 PMID:12730133
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Takayama Y, et al. (2003) GINS, a novel multiprotein complex required for chromosomal DNA replication in budding yeast. Genes Dev 17(9):1153-65 PMID:12730134
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Araki H (2002) [Regulation of chromosomal DNA replication by CDK]. Seikagaku 74(12):1468-71 PMID:12607918
    • SGD Paper
    • PubMed
  • Masumoto H, et al. (2002) S-Cdk-dependent phosphorylation of Sld2 essential for chromosomal DNA replication in budding yeast. Nature 415(6872):651-5 PMID:11807498
    • SGD Paper
    • DOI full text
    • PubMed
  • Araki H (2001) [DNA polymerase epsilon and relative factors in the S phase checkpoint]. Tanpakushitsu Kakusan Koso 46(8 Suppl):1201-7 PMID:11436311
    • SGD Paper
    • PubMed
  • Kamimura Y, et al. (2001) Sld3, which interacts with Cdc45 (Sld4), functions for chromosomal DNA replication in Saccharomyces cerevisiae. EMBO J 20(8):2097-107 PMID:11296242
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Masumoto H, et al. (2000) Dpb11 controls the association between DNA polymerases alpha and epsilon and the autonomously replicating sequence region of budding yeast. Mol Cell Biol 20(8):2809-17 PMID:10733584
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Araki H (1999) [Molecular mechanism for monitoring chromosomal DNA replication]. Tanpakushitsu Kakusan Koso 44(12 Suppl):1822-9 PMID:10503019
    • SGD Paper
    • PubMed
  • Kamimura Y, et al. (1998) Sld2, which interacts with Dpb11 in Saccharomyces cerevisiae, is required for chromosomal DNA replication. Mol Cell Biol 18(10):6102-9 PMID:9742127
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Leem SH, et al. (1998) Meiotic role of SWI6 in Saccharomyces cerevisiae. Nucleic Acids Res 26(13):3154-8 PMID:9628912
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Noskov VN, et al. (1998) The RFC2 gene, encoding the third-largest subunit of the replication factor C complex, is required for an S-phase checkpoint in Saccharomyces cerevisiae. Mol Cell Biol 18(8):4914-23 PMID:9671499
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Sugino A, et al. (1998) DNA polymerase epsilon encoded by cdc20+ is required for chromosomal DNA replication in the fission yeast Schizosaccharomyces pombe. Genes Cells 3(2):99-110 PMID:9605404
    • SGD Paper
    • DOI full text
    • PubMed
  • Sugimoto K, et al. (1996) Rfc5, a small subunit of replication factor C complex, couples DNA replication and mitosis in budding yeast. Proc Natl Acad Sci U S A 93(14):7048-52 PMID:8692942
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Araki H, et al. (1995) Dpb11, which interacts with DNA polymerase II(epsilon) in Saccharomyces cerevisiae, has a dual role in S-phase progression and at a cell cycle checkpoint. Proc Natl Acad Sci U S A 92(25):11791-5 PMID:8524850
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Nojima H, et al. (1994) Hac1: a novel yeast bZIP protein binding to the CRE motif is a multicopy suppressor for cdc10 mutant of Schizosaccharomyces pombe. Nucleic Acids Res 22(24):5279-88 PMID:7816617
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Noskov V, et al. (1994) The RFC2 gene encoding a subunit of replication factor C of Saccharomyces cerevisiae. Nucleic Acids Res 22(9):1527-35 PMID:8202350
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Irie K, et al. (1993) A gene, SMP2, involved in plasmid maintenance and respiration in Saccharomyces cerevisiae encodes a highly charged protein. Mol Gen Genet 236(2-3):283-8 PMID:8437575
    • SGD Paper
    • DOI full text
    • PubMed
  • Irie K, et al. (1993) MKK1 and MKK2, which encode Saccharomyces cerevisiae mitogen-activated protein kinase-kinase homologs, function in the pathway mediated by protein kinase C. Mol Cell Biol 13(5):3076-83 PMID:8386320
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Lee KS, et al. (1993) A yeast mitogen-activated protein kinase homolog (Mpk1p) mediates signalling by protein kinase C. Mol Cell Biol 13(5):3067-75 PMID:8386319
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Araki H, et al. (1992) DNA polymerase II, the probable homolog of mammalian DNA polymerase epsilon, replicates chromosomal DNA in the yeast Saccharomyces cerevisiae. EMBO J 11(2):733-40 PMID:1537345
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Araki H, et al. (1992) The CDC26 gene of Saccharomyces cerevisiae is required for cell growth only at high temperature. Mol Gen Genet 231(2):329-31 PMID:1736102
    • SGD Paper
    • DOI full text
    • PubMed
  • Awane K, et al. (1992) Automatic elimination of unnecessary bacterial sequences from yeast vectors. Gene 121(1):161-5 PMID:1427090
    • SGD Paper
    • DOI full text
    • PubMed
  • Lee J, et al. (1992) Functional analysis of Box II mutations in yeast site-specific recombinases Flp and R. Significance of amino acid conservation within the Int family and the yeast sub-family. J Mol Biol 228(4):1091-103 PMID:1474580
    • SGD Paper
    • DOI full text
    • PubMed
  • Serre MC, et al. (1992) Half-site recombinations mediated by yeast site-specific recombinases Flp and R. J Mol Biol 225(3):621-42 PMID:1602474
    • SGD Paper
    • DOI full text
    • PubMed
  • Araki H, et al. (1991) DPB2, the gene encoding DNA polymerase II subunit B, is required for chromosome replication in Saccharomyces cerevisiae. Proc Natl Acad Sci U S A 88(11):4601-5 PMID:2052544
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Araki H, et al. (1991) Cloning DPB3, the gene encoding the third subunit of DNA polymerase II of Saccharomyces cerevisiae. Nucleic Acids Res 19(18):4867-72 PMID:1923754
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Irie K, et al. (1991) A new protein kinase, SSP31, modulating the SMP3 gene-product involved in plasmid maintenance in Saccharomyces cerevisiae. Gene 108(1):139-44 PMID:1840547
    • SGD Paper
    • DOI full text
    • PubMed
  • Irie K, et al. (1991) Mutations in a Saccharomyces cerevisiae host showing increased holding stability of the heterologous plasmid pSR1. Mol Gen Genet 225(2):257-65 PMID:2005867
    • SGD Paper
    • DOI full text
    • PubMed
  • Toyn JH, et al. (1991) The cell-cycle-regulated budding yeast gene DBF2, encoding a putative protein kinase, has a homologue that is not under cell-cycle control. Gene 104(1):63-70 PMID:1916278
    • SGD Paper
    • DOI full text
    • PubMed
  • Johnston LH, et al. (1990) The product of the Saccharomyces cerevisiae cell cycle gene DBF2 has homology with protein kinases and is periodically expressed in the cell cycle. Mol Cell Biol 10(4):1358-66 PMID:2181271
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Matsuzaki H, et al. (1990) Chromosome engineering in Saccharomyces cerevisiae by using a site-specific recombination system of a yeast plasmid. J Bacteriol 172(2):610-8 PMID:2404945
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Morrison A, et al. (1990) A third essential DNA polymerase in S. cerevisiae. Cell 62(6):1143-51 PMID:2169349
    • SGD Paper
    • DOI full text
    • PubMed
  • Araki H and Oshima Y (1989) An autonomously replicating sequence of pSRI plasmid is effective in two yeast species, Zygosaccharomyces rouxii and Saccharomyces cerevisiae. J Mol Biol 207(4):757-69 PMID:2668540
    • SGD Paper
    • DOI full text
    • PubMed
  • Matsuzaki H, et al. (1988) Gene conversion associated with site-specific recombination in yeast plasmid pSR1. Mol Cell Biol 8(2):955-62 PMID:3280974
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Araki H, et al. (1985) Molecular and functional organization of yeast plasmid pSR1. J Mol Biol 182(2):191-203 PMID:3889347
    • SGD Paper
    • DOI full text
    • PubMed
  • Tanaka K, et al. (1984) Mating type control in Saccharomyces cerevisiae: a frameshift mutation at the common DNA sequence, X, of the HML alpha locus. Mol Cell Biol 4(1):203-11 PMID:6321951
    • SGD Paper
    • DOI full text
    • PMC full text
    • PubMed
  • Toh-e A, et al. (1984) Plasmids resembling 2-micrometers DNA in the osmotolerant yeasts Saccharomyces bailii and Saccharomyces bisporus. J Gen Microbiol 130(10):2527-34 PMID:6096485
    • SGD Paper
    • DOI full text
    • PubMed
  • SGD
  • About
  • Blog
  • Help
  • Privacy Policy
  • Creative Commons License
© Stanford University, Stanford, CA 94305.
Back to Top