Organelles of the endomembrane system maintain their identity and integrity during growth or stress conditions by homeostatic mechanisms that regulate membrane flux and biogenesis. At lysosomes and endosomes, the Fab1 lipid kinase complex and the nutrient-regulated target of rapamycin complex 1 (TORC1) control the integrity of the endolysosomal homeostasis and cellular metabolism. Both complexes are functionally connected as Fab1-dependent generation of PI(3,5)P2 supports TORC1 activity. Here, we identify Fab1 as a target of TORC1 on signaling endosomes, which are distinct from multivesicular bodies, and provide mechanistic insight into their crosstalk. Accordingly, TORC1 can phosphorylate Fab1 proximal to its PI3P-interacting FYVE domain, which causes Fab1 to shift to signaling endosomes, where it generates PI(3,5)P2. This, in turn, regulates (1) vacuole morphology, (2) recruitment of TORC1 and the TORC1-regulatory Rag GTPase-containing EGO complex to signaling endosomes, and (3) TORC1 activity. Thus, our study unravels a regulatory feedback loop between TORC1 and the Fab1 complex that controls signaling at endolysosomes.
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Regulator | Target | Direction | Regulation Of | Happens During | Method | Evidence |
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TORC1 serine/threonine-protein kinase complex, TOR1 variant | FAB1 | protein activity | high-throughput | experimental evidence | ||
TORC1 serine/threonine-protein kinase complex, TOR1 variant | SCH9 | protein activity | high-throughput | experimental evidence |
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Protein | Site | Modification | Modifier |
---|---|---|---|
FAB1 | S125 | phosphorylated residue | TORC1 serine/threonine-protein kinase complex, TOR1 variant |
FAB1 | S155 | phosphorylated residue | TORC1 serine/threonine-protein kinase complex, TOR1 variant |
FAB1 | S204 | phosphorylated residue | TORC1 serine/threonine-protein kinase complex, TOR1 variant |
FAB1 | S208 | phosphorylated residue | TORC1 serine/threonine-protein kinase complex, TOR1 variant |
FAB1 | S210 | phosphorylated residue | TORC1 serine/threonine-protein kinase complex, TOR1 variant |
SCH9 | T723 | phosphorylated residue | TORC1 serine/threonine-protein kinase complex, TOR1 variant |
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Evidence ID | Analyze ID | Interactor | Interactor Systematic Name | Interactor | Interactor Systematic Name | Allele | Assay | Annotation | Action | Phenotype | SGA score | P-value | Source | Reference | Note |
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Increase the total number of rows showing on this page by using the pull-down located below the table, or use the page scroll at the table's top right to browse through the table's pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table; click on the small "i" buttons located within a cell for an annotation to view further details about experiment type and any other genes involved in the interaction.