BOL3 / YAL046C Overview


Standard Name
BOL3 1 2
Systematic Name
YAL046C
SGD ID
SGD:S000000044
Aliases
AIM1 3
Feature Type
ORF , Verified
Description
Protein involved in Fe-S cluster transfer to mitochondrial clients; protects [4Fe-4S] clusters from damage due to oxidative stress by acting along with Nfu1p at a late step in the transfer of [4Fe-4S] clusters from the ISA complex to mitochondrial client proteins like lipoate synthase and succinate dehydrogenase; sequence similarity to human BOLA family member, BOLA3, mutations of which are associated with Multiple Mitochondria Dysfunctions Syndrome (MMDS2) 1 2
Name Description
BolA-like protein
Comparative Info
Sequence Details

Sequence

The S. cerevisiae Reference Genome sequence is derived from laboratory strain S288C. Download DNA or protein sequence, view genomic context and coordinates. Click "Sequence Details" to view all sequence information for this locus, including that for other strains.


Summary
BOL3 is located on the left arm of chromosome I between SPC72 gamma-tubulin small complex receptor and BOL1 mitochondrial matrix protein; coding sequence is 357 nucleotides long with 1 nonsynonymous SNP, 3 synonymous SNPs
Protein Details

Protein

Basic sequence-derived (length, molecular weight, isoelectric point) and experimentally-determined (median abundance, median absolute deviation) protein information. Click "Protein Details" for further information about the protein such as half-life, abundance, domains, domains shared with other proteins, protein sequence retrieval for various strains, physico-chemical properties, protein modification sites, and external identifiers for the protein.


Summary
Bol3p is 118 amino acids long, short-lived, low in abundance; succinylated on K108
Length (a.a.)
118
Mol. Weight (Da)
13364.9
Isoelectric Point
10.67
Median Abundance (molecules/cell)
1951 +/- 1583
Half-life (hr)
4.7

Alleles

Curated mutant alleles for the specified gene, listed alphabetically. Click on the allele name to open the allele page. Click "SGD search" to view all alleles in search results.


View all BOL3 alleles in SGD search

Gene Ontology Details

Gene Ontology

GO Annotations consist of four mandatory components: a gene product, a term from one of the three Gene Ontology (GO) controlled vocabularies (Molecular Function, Biological Process, and Cellular Component), a reference, and an evidence code. SGD has manually curated and high-throughput GO Annotations, both derived from the literature, as well as computational, or predicted, annotations. Click "Gene Ontology Details" to view all GO information and evidence for this locus as well as biological processes it shares with other genes.


Summary
Mitochondrial matrix protein involved in transferring [4Fe-4S] clusters from the ISA complex to client proteins

View computational annotations

Molecular Function

Manually Curated

Biological Process

Manually Curated

Cellular Component

Manually Curated

Complex

Macromolecular complex annotations are imported from the Complex Portal. These annotations have been derived from physical molecular interaction evidence extracted from the literature and cross-referenced in the entry, or by curator inference from information on homologs in closely related species or by inference from scientific background.


Phenotype Details

Phenotype

Phenotype annotations for a gene are curated single mutant phenotypes that require an observable (e.g., "cell shape"), a qualifier (e.g., "abnormal"), a mutant type (e.g., null), strain background, and a reference. In addition, annotations are classified as classical genetics or high-throughput (e.g., large scale survey, systematic mutation set). Whenever possible, allele information and additional details are provided. Click "Phenotype Details" to view all phenotype annotations and evidence for this locus as well as phenotypes it shares with other genes.


Summary
Non-essential gene; null mutant displays decreased competitive fitness in media containing either fermentable or non-fermentable carbon sources; null mutant displays an increased frequency of spontaneous mitochondrial genome loss and elevated levels of Rnr3p, indicative of genome instability; null mutant is defective in biofilm formation; null mutant displays increased survival following a ramped heat stimulus; null mutant displays a reduction in the delivery of a plasma membrane reporter to the cell surface; heterozygous null mutant is haploinsufficient
Interaction Details

Interaction

Interaction annotations are curated by BioGRID and include physical or genetic interactions observed between at least two genes. An interaction annotation is composed of the interaction type, name of the interactor, assay type (e.g., Two-Hybrid), annotation type (e.g., manual or high-throughput), and a reference, as well as other experimental details. Click "Interaction Details" to view all interaction annotations and evidence for this locus, including an interaction visualization.


Summary
Bol3p interacts physically with proteins involved in translation regulation and RNA catabolism; BOL3 interacts genetically with genes involved in transcription

116 total interactions for 106 unique genes

Physical Interactions

  • Affinity Capture-MS: 15
  • Affinity Capture-RNA: 5
  • Co-purification: 1
  • Two-hybrid: 4

Genetic Interactions

  • Negative Genetic: 76
  • Phenotypic Enhancement: 1
  • Positive Genetic: 11
  • Synthetic Growth Defect: 2
  • Synthetic Rescue: 1
Regulation Details

Regulation

The number of putative Regulators (genes that regulate it) and Targets (genes it regulates) for the given locus, based on experimental evidence. This evidence includes data generated through high-throughput techniques. Click "Regulation Details" to view all regulation annotations, shared GO enrichment among regulation Targets, and a regulator/target diagram for the locus.


Summary
BOL3 promoter is bound by Fkh1p and Med4p in response to heat
Regulators
2
Targets
0
Expression Details

Expression

Expression data are derived from records contained in the Gene Expression Omnibus (GEO), and are first log2 transformed and normalized. Referenced datasets may contain one or more condition(s), and as a result there may be a greater number of conditions than datasets represented in a single clickable histogram bar. The histogram division at 0.0 separates the down-regulated (green) conditions and datasets from those that are up-regulated (red). Click "Expression Details" to view all expression annotations and details for this locus, including a visualization of genes that share a similar expression pattern.


Summary Paragraph

A summary of the locus, written by SGD Biocurators following a thorough review of the literature. Links to gene names and curated GO terms are included within the Summary Paragraphs.


Last Updated: 2024-06-19

Literature Details

Literature

All manually curated literature for the specified gene, organized into topics according to their relevance to the gene (Primary Literature, Additional Literature, or Review). Click "Literature Details" to view all literature information for this locus, including shared literature between genes.


Primary
5
Additional
3
Reviews
10

Resources