Interaction Help

COB / Q0105 Interactions

Interaction annotations are curated by BioGRID and include physical or genetic interactions observed between at least two genes. An interaction annotation is composed of the interaction type, name of the interactor, assay type (e.g., Two-Hybrid), annotation type (e.g., manual or high-throughput), and a reference. Experimental details, phenotype, modification, and multiple mutant information are included when available.


Source: All physical and genetic interaction annotations listed in SGD are curated by BioGRID.

Genetic Interactions

An interaction is defined as an experimentally observed physical or genetic interaction between two genes. There may be more than one row listed for the same interactor if the interaction between it and the given gene was observed in separate studies. All interactions listed in SGD are curated by BioGRID.


Genetic Interactions

Increase the total number of rows showing on this page by using the pull-down located below the table, or use the page scroll at the table's top right to browse through the table's pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table; click on the small "i" buttons located within a cell for an annotation to view further details about experiment type and any other genes involved in the interaction.

Interactor Interactor Allele Assay Annotation Action Phenotype SGA score P-value Source Reference

Physical Interactions

An interaction is defined as an experimentally observed physical or genetic interaction between two genes. There may be more than one row listed for the same interactor if the interaction between it and the given gene was observed in separate studies. All interactions listed in SGD are curated by BioGRID.


Physical Interactions 55 entries for 33 genes

Increase the total number of rows showing on this page by using the pull-down located below the table, or use the page scroll at the table's top right to browse through the table's pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table; click on the small "i" buttons located within a cell for an annotation to view further details about experiment type and any other genes involved in the interaction.

InteractorAssayAnnotationActionModificationReference
BCS1Affinity Capture-Westernmanually curatedHitNo ModificationCruciat CM, et al. (1999) PMID:10508156
CBP2Protein-RNAmanually curatedHitNo ModificationWebb AE, et al. (2001) PMID:11399081
CBP3Co-fractionationmanually curatedBaitNo ModificationGruschke S, et al. (2012) PMID:23007649

Figure 2|Figure 4B

CBP3Affinity Capture-Westernmanually curatedHitNo ModificationHildenbeutel M, et al. (2014) PMID:24841564

Figure 2

CBP3Affinity Capture-Westernmanually curatedBaitNo ModificationHildenbeutel M, et al. (2014) PMID:24841564
CBP3Affinity Capture-Westernmanually curatedHitNo ModificationNaumenko N, et al. (2017) PMID:29093463
CBP3Affinity Capture-RNAmanually curatedHitNo ModificationGarcía-Guerrero AE, et al. (2018) PMID:29475949
CBP3Co-crystal Structuremanually curatedHitNo ModificationNdi M, et al. (2019) PMID:31537648
CBP4Co-fractionationmanually curatedBaitNo ModificationGruschke S, et al. (2012) PMID:23007649

Figure 2

CBP4Affinity Capture-Westernmanually curatedBaitNo ModificationHildenbeutel M, et al. (2014) PMID:24841564
Showing 1 to 10 of 55 entries

Interaction Network

This diagram displays physical (purple lines) and genetic (green lines) interactions between the given gene (yellow circle) and its interactors (gray circles) based on the number of experiments supporting each interaction (adjustable using the slider at the bottom). Interactions between the interactors for a given gene are also shown.


Reset

Click on a gene to go to its specific page within SGD; drag any of the gene objects around within the visualization for easier viewing; filter by interaction type (genetic or physical) using the radio buttons; click “Reset” to automatically redraw the diagram; filter the number of interactors displayed by adjusting the number of experiments supporting a gene's interaction with the given gene by clicking anywhere on the slider bar or dragging the tab to the desired filter number.

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Resources


BioGRID | CYC2008 | GeneMANIA | IMP | InterologFinder | ModelArchive | TheCellMap