Literature Help
SUF9 / YNCF0002W Literature
All manually curated literature for the specified gene, organized by relevance to the gene and by
association with specific annotations to the gene in SGD. SGD gathers references via a PubMed search for
papers whose titles or abstracts contain “yeast” or “cerevisiae;” these papers are reviewed manually and
linked to relevant genes and literature topics by SGD curators.
- Unique References
- 40
- Aliases
-
tP(UGG)F
,
tRNA-Pro
Primary Literature
Literature that either focuses on the gene or contains information about function, biological role,
cellular location, phenotype, regulation, structure, or disease homologs in other species for the gene
or gene product.
No primary literature curated.
Download References (.nbib)
- Kumar Y and Bhargava P (2013) A unique nucleosome arrangement, maintained actively by chromatin remodelers facilitates transcription of yeast tRNA genes. BMC Genomics 14:402 PMID:23767421
- Jamonnak N, et al. (2011) Yeast Nrd1, Nab3, and Sen1 transcriptome-wide binding maps suggest multiple roles in post-transcriptional RNA processing. RNA 17(11):2011-25 PMID:21954178
- Chan PP and Lowe TM (2009) GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Nucleic Acids Res 37(Database issue):D93-7 PMID:18984615
- Dieci G, et al. (2000) TFIIIC-independent in vitro transcription of yeast tRNA genes. J Mol Biol 299(3):601-13 PMID:10835271
- Hani J and Feldmann H (1998) tRNA genes and retroelements in the yeast genome. Nucleic Acids Res 26(3):689-96 PMID:9443958
- Lowe TM and Eddy SR (1997) tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25(5):955-64 PMID:9023104
- Percudani R, et al. (1997) Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae. J Mol Biol 268(2):322-30 PMID:9159473
- Winey M, et al. (1989) Distribution of introns in frameshift-suppressor proline-tRNA genes of Saccharomyces cerevisiae. Gene 76(1):89-97 PMID:2663651
- Cummins CM, et al. (1980) Frameshift suppression in Saccharomyces cerevisiae. III. Isolation and genetic properties of group III suppressors. Genetics 95(4):855-79 PMID:7009319
Related Literature
Genes that share literature (indicated by the purple circles) with the specified gene (indicated by yellow circle).
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Additional Literature
Papers that show experimental evidence for the gene or describe homologs in other species, but
for which the gene is not the paper’s principal focus.
No additional literature curated.
Download References (.nbib)
- Strassler SE, et al. (2023) tRNA m1G9 modification depends on substrate-specific RNA conformational changes induced by the methyltransferase Trm10. J Biol Chem 299(12):105443 PMID:37949221
- Lant JT, et al. (2018) Visualizing tRNA-dependent mistranslation in human cells. RNA Biol 15(4-5):567-575 PMID:28933646
- Hoffman KS, et al. (2017) Genetic selection for mistranslation rescues a defective co-chaperone in yeast. Nucleic Acids Res 45(6):3407-3421 PMID:27899648
- Yukawa Y, et al. (2011) A common sequence motif involved in selection of transcription start sites of Arabidopsis and budding yeast tRNA genes. Genomics 97(3):166-72 PMID:21147216
- Ouameur AA, et al. (2010) Probing tRNA interaction with biogenic polyamines. RNA 16(10):1968-79 PMID:20729276
- Staschke KA, et al. (2010) Integration of general amino acid control and target of rapamycin (TOR) regulatory pathways in nitrogen assimilation in yeast. J Biol Chem 285(22):16893-911 PMID:20233714
- Copela LA, et al. (2008) Competition between the Rex1 exonuclease and the La protein affects both Trf4p-mediated RNA quality control and pre-tRNA maturation. RNA 14(6):1214-27 PMID:18456844
- Huang B, et al. (2008) A genome-wide screen identifies genes required for formation of the wobble nucleoside 5-methoxycarbonylmethyl-2-thiouridine in Saccharomyces cerevisiae. RNA 14(10):2183-94 PMID:18755837
- Thompson DM, et al. (2008) tRNA cleavage is a conserved response to oxidative stress in eukaryotes. RNA 14(10):2095-103 PMID:18719243
- Cieśla M, et al. (2007) Maf1 is involved in coupling carbon metabolism to RNA polymerase III transcription. Mol Cell Biol 27(21):7693-702 PMID:17785443
- Jakó E, et al. (2007) In silico detection of tRNA sequence features characteristic to aminoacyl-tRNA synthetase class membership. Nucleic Acids Res 35(16):5593-609 PMID:17704131
- Yoshihisa T, et al. (2007) Cytoplasmic splicing of tRNA in Saccharomyces cerevisiae. Genes Cells 12(3):285-97 PMID:17352735
- Goodenbour JM and Pan T (2006) Diversity of tRNA genes in eukaryotes. Nucleic Acids Res 34(21):6137-46 PMID:17088292
- Marck C, et al. (2006) The RNA polymerase III-dependent family of genes in hemiascomycetes: comparative RNomics, decoding strategies, transcription and evolutionary implications. Nucleic Acids Res 34(6):1816-35 PMID:16600899
- Giuliodori S, et al. (2003) A composite upstream sequence motif potentiates tRNA gene transcription in yeast. J Mol Biol 333(1):1-20 PMID:14516739
- Yoshihisa T, et al. (2003) Possibility of cytoplasmic pre-tRNA splicing: the yeast tRNA splicing endonuclease mainly localizes on the mitochondria. Mol Biol Cell 14(8):3266-79 PMID:12925762
- Winey M, et al. (1986) Splicing of a yeast proline tRNA containing a novel suppressor mutation in the anticodon stem. J Mol Biol 192(1):49-63 PMID:3546704
- Lee MC and Knapp G (1985) Transfer RNA splicing in Saccharomyces cerevisiae. Secondary and tertiary structures of the substrates. J Biol Chem 260(5):3108-15 PMID:3882706
- Ogden RC, et al. (1984) Transfer RNA splicing in Saccharomyces cerevisiae: defining the substrates. Nucleic Acids Res 12(24):9367-82 PMID:6096826
- Gaber RF and Culbertson MR (1982) Frameshift suppression in Saccharomyces cerevisiae. IV. New suppressors among spontaneous co-revertants of the Group II his4-206 and leu 2-3 frameshift mutations. Genetics 101(3-4):345-67 PMID:6757051
- Culbertson MR, et al. (1977) Frameshifts and frameshift suppressors in Saccharomyces cerevisiae. Genetics 86(4):745-64 PMID:72702
Reviews
No reviews curated.
Gene Ontology Literature
Paper(s) associated with one or more GO (Gene Ontology) terms in SGD for the specified gene.
No gene ontology literature curated.
Regulation Literature
Paper(s) associated with one or more pieces of regulation evidence in SGD, as found on the
Regulation page.
No regulation literature curated.
High-Throughput Literature
Paper(s) associated with one or more pieces of high-throughput evidence in SGD.
No high-throughput literature curated.