Literature Help
SCR1 / YNCE0024W Literature
All manually curated literature for the specified gene, organized by relevance to the gene and by
association with specific annotations to the gene in SGD. SGD gathers references via a PubMed search for
papers whose titles or abstracts contain “yeast” or “cerevisiae;” these papers are reviewed manually and
linked to relevant genes and literature topics by SGD curators.
Primary Literature
Literature that either focuses on the gene or contains information about function, biological role,
cellular location, phenotype, regulation, structure, or disease homologs in other species for the gene
or gene product.
No primary literature curated.
Download References (.nbib)
- Belagal P, et al. (2016) Decoding the principles underlying the frequency of association with nucleoli for RNA polymerase III-transcribed genes in budding yeast. Mol Biol Cell 27(20):3164-3177 PMID:27559135
- Leung E, et al. (2014) Integrity of SRP RNA is ensured by La and the nuclear RNA quality control machinery. Nucleic Acids Res 42(16):10698-710 PMID:25159613
- Heider D, et al. (2009) DNA watermarks in non-coding regulatory sequences. BMC Res Notes 2:125 PMID:19583865
- van Nues RW, et al. (2008) Roles for Srp72p in assembly, nuclear export and function of the signal recognition particle. RNA Biol 5(2):73-83 PMID:18418087
- van Nues RW and Brown JD (2007) Distant segments of Saccharomyces cerevisiae scR1 RNA promote assembly and function of the signal recognition particle. J Mol Biol 368(3):677-90 PMID:17368481
- Van Nues RW and Brown JD (2004) Saccharomyces SRP RNA secondary structures: a conserved S-domain and extended Alu-domain. RNA 10(1):75-89 PMID:14681587
- Dieci G, et al. (2002) Intragenic promoter adaptation and facilitated RNA polymerase III recycling in the transcription of SCR1, the 7SL RNA gene of Saccharomyces cerevisiae. J Biol Chem 277(9):6903-14 PMID:11741971
- Grosshans H, et al. (2001) Biogenesis of the signal recognition particle (SRP) involves import of SRP proteins into the nucleolus, assembly with the SRP-RNA, and Xpo1p-mediated export. J Cell Biol 153(4):745-62 PMID:11352936
- Ciufo LF and Brown JD (2000) Nuclear export of yeast signal recognition particle lacking Srp54p by the Xpo1p/Crm1p NES-dependent pathway. Curr Biol 10(20):1256-64 PMID:11069106
- Mason N, et al. (2000) Elongation arrest is a physiologically important function of signal recognition particle. EMBO J 19(15):4164-74 PMID:10921896
- Strub K, et al. (1999) The Alu domain homolog of the yeast signal recognition particle consists of an Srp14p homodimer and a yeast-specific RNA structure. RNA 5(10):1333-47 PMID:10573124
- Brown JD, et al. (1994) Subunits of the Saccharomyces cerevisiae signal recognition particle required for its functional expression. EMBO J 13(18):4390-400 PMID:7925282
- Hann BC and Walter P (1991) The signal recognition particle in S. cerevisiae. Cell 67(1):131-44 PMID:1655273
- Felici F, et al. (1989) The most abundant small cytoplasmic RNA of Saccharomyces cerevisiae has an important function required for normal cell growth. Mol Cell Biol 9(8):3260-8 PMID:2477683
Related Literature
Genes that share literature (indicated by the purple circles) with the specified gene (indicated by yellow circle).
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Additional Literature
Papers that show experimental evidence for the gene or describe homologs in other species, but
for which the gene is not the paper’s principal focus.
No additional literature curated.
Download References (.nbib)
- Yeter-Alat H, et al. (2024) The RNA Helicase Ded1 from Yeast Is Associated with the Signal Recognition Particle and Is Regulated by SRP21. Molecules 29(12) PMID:38931009
- van Breugel ME, et al. (2023) Locus-specific proteome decoding reveals Fpt1 as a chromatin-associated negative regulator of RNA polymerase III assembly. Mol Cell 83(23):4205-4221.e9 PMID:37995691
- Meduri R, et al. (2022) Phase-separation antagonists potently inhibit transcription and broadly increase nucleosome density. J Biol Chem 298(10):102365 PMID:35963432
- Asif-Laidin A, et al. (2020) A small targeting domain in Ty1 integrase is sufficient to direct retrotransposon integration upstream of tRNA genes. EMBO J 39(17):e104337 PMID:32677087
- Costa EA, et al. (2018) Defining the physiological role of SRP in protein-targeting efficiency and specificity. Science 359(6376):689-692 PMID:29348368
- Hendrickson DG, et al. (2018) A new experimental platform facilitates assessment of the transcriptional and chromatin landscapes of aging yeast. Elife 7 PMID:30334737
- Zhou Z, et al. (2017) Independent manipulation of histone H3 modifications in individual nucleosomes reveals the contributions of sister histones to transcription. Elife 6 PMID:29027902
- Kwapisz M, et al. (2015) Expression of Subtelomeric lncRNAs Links Telomeres Dynamics to RNA Decay in S. cerevisiae. Noncoding RNA 1(2):94-126 PMID:29861418
- Peres da Silva R, et al. (2015) Extracellular vesicle-mediated export of fungal RNA. Sci Rep 5:7763 PMID:25586039
- Peccarelli M, et al. (2014) Regulation of CTR2 mRNA by the nonsense-mediated mRNA decay pathway. Biochim Biophys Acta 1839(11):1283-94 PMID:25257758
- Talkish J, et al. (2014) Mod-seq: high-throughput sequencing for chemical probing of RNA structure. RNA 20(5):713-20 PMID:24664469
- Qi X, et al. (2012) Retrotransposon profiling of RNA polymerase III initiation sites. Genome Res 22(4):681-92 PMID:22287102
- Cruz JA and Westhof E (2011) Identification and annotation of noncoding RNAs in Saccharomycotina. C R Biol 334(8-9):671-8 PMID:21819949
- Minard LV, et al. (2011) Transcriptional regulation by Asf1: new mechanistic insights from studies of the DNA damage response to replication stress. J Biol Chem 286(9):7082-92 PMID:21190944
- Tavenet A, et al. (2009) Genome-wide location analysis reveals a role for Sub1 in RNA polymerase III transcription. Proc Natl Acad Sci U S A 106(34):14265-70 PMID:19706510
- D'Ambrosio C, et al. (2008) Identification of cis-acting sites for condensin loading onto budding yeast chromosomes. Genes Dev 22(16):2215-27 PMID:18708580
- Dalley JA, et al. (2008) Access to ribosomal protein Rpl25p by the signal recognition particle is required for efficient cotranslational translocation. Mol Biol Cell 19(7):2876-84 PMID:18448667
- Soragni E and Kassavetis GA (2008) Absolute gene occupancies by RNA polymerase III, TFIIIB, and TFIIIC in Saccharomyces cerevisiae. J Biol Chem 283(39):26568-76 PMID:18667429
- Miyauchi K, et al. (2007) Automated parallel isolation of multiple species of non-coding RNAs by the reciprocal circulating chromatography method. Nucleic Acids Res 35(4):e24 PMID:17251194
- Kovalskaya ON, et al. (2006) Does a deficiency of the signal recognition particle (SRP)-pathway affect the biosynthesis of its components in Saccharomyces cerevisiae and Escherichia coli? Biochemistry (Mosc) 71(7):723-9 PMID:16903826
- Marck C, et al. (2006) The RNA polymerase III-dependent family of genes in hemiascomycetes: comparative RNomics, decoding strategies, transcription and evolutionary implications. Nucleic Acids Res 34(6):1816-35 PMID:16600899
- Ferrari R, et al. (2004) Distinct roles of transcription factors TFIIIB and TFIIIC in RNA polymerase III transcription reinitiation. Proc Natl Acad Sci U S A 101(37):13442-7 PMID:15347814
- Willer M, et al. (2003) An in vitro assay using overexpressed yeast SRP demonstrates that cotranslational translocation is dependent upon the J-domain of Sec63p. Biochemistry 42(23):7171-7 PMID:12795613
- Kufel J, et al. (2002) Lsm proteins are required for normal processing of pre-tRNAs and their efficient association with La-homologous protein Lhp1p. Mol Cell Biol 22(14):5248-56 PMID:12077351
- Regalia M, et al. (2002) Prediction of signal recognition particle RNA genes. Nucleic Acids Res 30(15):3368-77 PMID:12140321
- Ogg SC, et al. (1992) Signal recognition particle receptor is important for cell growth and protein secretion in Saccharomyces cerevisiae. Mol Biol Cell 3(8):895-911 PMID:1327299
- Zopf D, et al. (1990) The methionine-rich domain of the 54 kd protein subunit of the signal recognition particle contains an RNA binding site and can be crosslinked to a signal sequence. EMBO J 9(13):4511-7 PMID:1702385
Reviews
No reviews curated.
Download References (.nbib)
- Pool MR (2022) Targeting of Proteins for Translocation at the Endoplasmic Reticulum. Int J Mol Sci 23(7) PMID:35409131
- Fatma Z, et al. (2020) Recent advances in domesticating non-model microorganisms. Biotechnol Prog 36(5):e3008 PMID:32329213
- Hou J, et al. (2012) Metabolic engineering of recombinant protein secretion by Saccharomyces cerevisiae. FEMS Yeast Res 12(5):491-510 PMID:22533807
- Zimmermann R, et al. (2011) Protein translocation across the ER membrane. Biochim Biophys Acta 1808(3):912-24 PMID:20599535
- Fonzi WA (2009) The protein secretory pathway of Candida albicans. Mycoses 52(4):291-303 PMID:19207839
- Pool MR (2005) Signal recognition particles in chloroplasts, bacteria, yeast and mammals (review). Mol Membr Biol 22(1-2):3-15 PMID:16092520
- Perumal K and Reddy R (2002) The 3' end formation in small RNAs. Gene Expr 10(1-2):59-78 PMID:11868988
- Agarraberes FA and Dice JF (2001) Protein translocation across membranes. Biochim Biophys Acta 1513(1):1-24 PMID:11427190
Gene Ontology Literature
Paper(s) associated with one or more GO (Gene Ontology) terms in SGD for the specified gene.
No gene ontology literature curated.
Download References (.nbib)
- Costa AR, et al. (2019) Proteasome inhibition prevents cell death induced by the chemotherapeutic agent cisplatin downstream of DNA damage. DNA Repair (Amst) 73:28-33 PMID:30502926
- van Nues RW, et al. (2008) Roles for Srp72p in assembly, nuclear export and function of the signal recognition particle. RNA Biol 5(2):73-83 PMID:18418087
- Mason N, et al. (2000) Elongation arrest is a physiologically important function of signal recognition particle. EMBO J 19(15):4164-74 PMID:10921896
- Brown JD, et al. (1994) Subunits of the Saccharomyces cerevisiae signal recognition particle required for its functional expression. EMBO J 13(18):4390-400 PMID:7925282
- Hann BC and Walter P (1991) The signal recognition particle in S. cerevisiae. Cell 67(1):131-44 PMID:1655273
Phenotype Literature
Paper(s) associated with one or more pieces of classical phenotype evidence in SGD for the specified gene.
No phenotype literature curated.
Interaction Literature
Paper(s) associated with evidence supporting a physical or genetic interaction between the
specified gene and another gene in SGD. Currently, all interaction evidence is obtained from
BioGRID.
No interaction literature curated.
Download References (.nbib)
- Yeter-Alat H, et al. (2024) The RNA Helicase Ded1 from Yeast Is Associated with the Signal Recognition Particle and Is Regulated by SRP21. Molecules 29(12) PMID:38931009
- Porter DF, et al. (2015) Target selection by natural and redesigned PUF proteins. Proc Natl Acad Sci U S A 112(52):15868-73 PMID:26668354
- Leung E, et al. (2014) Integrity of SRP RNA is ensured by La and the nuclear RNA quality control machinery. Nucleic Acids Res 42(16):10698-710 PMID:25159613
- Rossi D, et al. (2014) eIF5A has a function in the cotranslational translocation of proteins into the ER. Amino Acids 46(3):645-53 PMID:24306454
- Freeberg MA, et al. (2013) Pervasive and dynamic protein binding sites of the mRNA transcriptome in Saccharomyces cerevisiae. Genome Biol 14(2):R13 PMID:23409723