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RDN58-2 / YNCL0023C Literature
All manually curated literature for the specified gene, organized by relevance to the gene and by
association with specific annotations to the gene in SGD. SGD gathers references via a PubMed search for
papers whose titles or abstracts contain “yeast” or “cerevisiae;” these papers are reviewed manually and
linked to relevant genes and literature topics by SGD curators.
- Unique References
- 173
- Aliases
-
RDN58
Primary Literature
Literature that either focuses on the gene or contains information about function, biological role,
cellular location, phenotype, regulation, structure, or disease homologs in other species for the gene
or gene product.
No primary literature curated.
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- Mendes Felgueira CA and Schneider DA (2024) Growth-phase-dependent control of rRNA synthesis in Saccharomyces cerevisiae. mSphere 9(10):e0049324 PMID:39360849
- Solari CA, et al. (2024) Riboproteome remodeling during quiescence exit in Saccharomyces cerevisiae. iScience 27(1):108727 PMID:38235324
- Sultanov D and Hochwagen A (2022) Varying strength of selection contributes to the intragenomic diversity of rRNA genes. Nat Commun 13(1):7245 PMID:36434003
- Kargas V, et al. (2019) Mechanism of completion of peptidyltransferase centre assembly in eukaryotes. Elife 8 PMID:31115337
- Biedka S, et al. (2018) Hierarchical recruitment of ribosomal proteins and assembly factors remodels nucleolar pre-60S ribosomes. J Cell Biol 217(7):2503-2518 PMID:29691304
- Pöll G, et al. (2017) Structural transitions during large ribosomal subunit maturation analyzed by tethered nuclease structure probing in S. cerevisiae. PLoS One 12(7):e0179405 PMID:28686620
- Greber BJ (2016) Mechanistic insight into eukaryotic 60S ribosomal subunit biogenesis by cryo-electron microscopy. RNA 22(11):1643-1662 PMID:27875256
- Taoka M, et al. (2016) The complete chemical structure of Saccharomyces cerevisiae rRNA: partial pseudouridylation of U2345 in 25S rRNA by snoRNA snR9. Nucleic Acids Res 44(18):8951-8961 PMID:27325748
- Talkish J, et al. (2014) Ribosome assembly factors Pwp1 and Nop12 are important for folding of 5.8S rRNA during ribosome biogenesis in Saccharomyces cerevisiae. Mol Cell Biol 34(10):1863-77 PMID:24636992
- Naumov GI, et al. (2013) Molecular genetic diversity of the Saccharomyces yeasts in Taiwan: Saccharomyces arboricola, Saccharomyces cerevisiae and Saccharomyces kudriavzevii. Antonie Van Leeuwenhoek 103(1):217-28 PMID:22941248
- Ohmayer U, et al. (2013) Studies on the assembly characteristics of large subunit ribosomal proteins in S. cerevisae. PLoS One 8(7):e68412 PMID:23874617
- Li E, et al. (2012) Evaluation of yeast diversity during wine fermentations with direct inoculation and pied de cuve method at an industrial scale. J Microbiol Biotechnol 22(7):960-6 PMID:22580315
- Talkish J, et al. (2012) Hierarchical recruitment into nascent ribosomes of assembly factors required for 27SB pre-rRNA processing in Saccharomyces cerevisiae. Nucleic Acids Res 40(17):8646-61 PMID:22735702
- Bautista-Gallego J, et al. (2011) Exploring the yeast biodiversity of green table olive industrial fermentations for technological applications. Int J Food Microbiol 147(2):89-96 PMID:21497408
- Granneman S, et al. (2011) A cluster of ribosome synthesis factors regulate pre-rRNA folding and 5.8S rRNA maturation by the Rat1 exonuclease. EMBO J 30(19):4006-19 PMID:21811236
- Clavijo A, et al. (2010) Diversity of Saccharomyces and non-Saccharomyces yeasts in three red grape varieties cultured in the Serranía de Ronda (Spain) vine-growing region. Int J Food Microbiol 143(3):241-5 PMID:20851489
- Kos M and Tollervey D (2010) Yeast pre-rRNA processing and modification occur cotranscriptionally. Mol Cell 37(6):809-20 PMID:20347423
- Pando Bedriñana R, et al. (2010) Genetic and phenotypic diversity of autochthonous cider yeasts in a cellar from Asturias. Food Microbiol 27(4):503-8 PMID:20417399
- Rodríguez-Gómez F, et al. (2010) Lipolytic activity of the yeast species associated with the fermentation/storage phase of ripe olive processing. Food Microbiol 27(5):604-12 PMID:20510778
- Sinigaglia M, et al. (2010) Yeasts isolated from olive mill wastewaters from southern Italy: technological characterization and potential use for phenol removal. Appl Microbiol Biotechnol 87(6):2345-54 PMID:20532759
- Valmorri S, et al. (2010) Yeast microbiota associated with spontaneous sourdough fermentations in the production of traditional wheat sourdough breads of the Abruzzo region (Italy). Antonie Van Leeuwenhoek 97(2):119-29 PMID:19904626
- Zott K, et al. (2010) Characterization of the yeast ecosystem in grape must and wine using real-time PCR. Food Microbiol 27(5):559-67 PMID:20510771
- Hierro N, et al. (2007) Monitoring of Saccharomyces and Hanseniaspora populations during alcoholic fermentation by real-time quantitative PCR. FEMS Yeast Res 7(8):1340-9 PMID:17727658
- Antunovics Z, et al. (2005) Combined application of methods to taxonomic identification of Saccharomyces strains in fermenting botrytized grape must. J Appl Microbiol 98(4):971-9 PMID:15752344
- Antunovics Z, et al. (2005) Gradual genome stabilisation by progressive reduction of the Saccharomyces uvarum genome in an interspecific hybrid with Saccharomyces cerevisiae. FEMS Yeast Res 5(12):1141-50 PMID:15982931
- Naumova ES, et al. (2005) [The molecular genetic differentiation of cultured Saccharomyces strains]. Mikrobiologiia 74(2):215-23 PMID:15938398
- Nisiotou AA and Gibson GR (2005) Isolation of culturable yeasts from market wines and evaluation of the 5.8S-ITS rDNA sequence analysis for identification purposes. Lett Appl Microbiol 41(6):454-63 PMID:16305670
- Esteve-Zarzoso B, et al. (2004) Authentication and identification of Saccharomyces cerevisiae 'flor' yeast races involved in sherry ageing. Antonie Van Leeuwenhoek 85(2):151-8 PMID:15031656
- Pulvirenti A, et al. (2004) Occurrence and dominance of yeast species in sourdough. Lett Appl Microbiol 38(2):113-7 PMID:14746541
- Cavalieri D, et al. (2003) Evidence for S. cerevisiae fermentation in ancient wine. J Mol Evol 57 Suppl 1:S226-32 PMID:15008419
- Beltran G, et al. (2002) Analysis of yeast populations during alcoholic fermentation: a six year follow-up study. Syst Appl Microbiol 25(2):287-93 PMID:12353885
- Sabate J, et al. (2002) Isolation and identification of yeasts associated with vineyard and winery by RFLP analysis of ribosomal genes and mitochondrial DNA. Microbiol Res 157(4):267-74 PMID:12501990
- Fernández-González M, et al. (2001) Yeasts present during wine fermentation: comparative analysis of conventional plating and PCR-TTGE. Syst Appl Microbiol 24(4):634-8 PMID:11876371
- Petersen KM, et al. (2001) DNA typing methods for differentiation of Debaryomyces hansenii strains and other yeasts related to surface ripened cheeses. Int J Food Microbiol 69(1-2):11-24 PMID:11589549
- Spahn CM, et al. (2001) Structure of the 80S ribosome from Saccharomyces cerevisiae--tRNA-ribosome and subunit-subunit interactions. Cell 107(3):373-86 PMID:11701127
- Pramateftaki PV, et al. (2000) Molecular identification of wine yeasts at species or strain level: a case study with strains from two vine-growing areas of Greece. J Appl Microbiol 89(2):236-48 PMID:10971755
- Esteve-Zarzoso B, et al. (1999) Identification of yeasts by RFLP analysis of the 5.8S rRNA gene and the two ribosomal internal transcribed spacers. Int J Syst Bacteriol 49 Pt 1:329-37 PMID:10028278
- Wyder MT, et al. (1999) Description of Saccharomyces turicensis sp. nov., a new species from kefyr. Syst Appl Microbiol 22(3):420-5 PMID:10553294
- Allmang C and Tollervey D (1998) The role of the 3' external transcribed spacer in yeast pre-rRNA processing. J Mol Biol 278(1):67-78 PMID:9571034
- Mitchell P, et al. (1996) The 3' end of yeast 5.8S rRNA is generated by an exonuclease processing mechanism. Genes Dev 10(4):502-13 PMID:8600032
- Lee JC and Traut RR (1984) Proximity of 5.8 S RNA-binding proteins and A-site proteins in yeast ribosomes inferred from cross-linking. J Biol Chem 259(16):9971-4 PMID:6432786
- Nazar RN (1978) The release and reassociation of 5.8 S rRNA with yeast ribosomes. J Biol Chem 253(13):4505-7 PMID:350876
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Additional Literature
Papers that show experimental evidence for the gene or describe homologs in other species, but
for which the gene is not the paper’s principal focus.
No additional literature curated.
Download References (.nbib)
- Chang YT, et al. (2025) Cytoplasmic ribosomes on mitochondria alter the local membrane environment for protein import. J Cell Biol 224(4) PMID:40047641
- An W, et al. (2024) High resolution landscape of ribosomal RNA processing and surveillance. Nucleic Acids Res 52(17):10630-10644 PMID:38994562
- Lazar-Stefanita L, et al. (2023) Two differentially stable rDNA loci coexist on the same chromosome and form a single nucleolus. Proc Natl Acad Sci U S A 120(9):e2219126120 PMID:36821584
- Paillé A, et al. (2023) Distinctive Participation of Transcription-Coupled and Global Genome Nucleotide Excision Repair of Pyrimidine Dimers in the Transcribed Strand of Yeast rRNA Genes. Biochemistry 62(13):2029-2040 PMID:37347542
- Xiao K, et al. (2023) RNA structural probing of guanine and uracil nucleotides in yeast. PLoS One 18(7):e0288070 PMID:37418367
- Corbu VM and Csutak O (2022) Molecular and Physiological Diversity of Indigenous Yeasts Isolated from Spontaneously Fermented Wine Wort from Ilfov County, Romania. Microorganisms 11(1) PMID:36677329
- Li X, et al. (2021) A Novel Model for the RNase MRP-Induced Switch between the Formation of Different Forms of 5.8S rRNA. Int J Mol Sci 22(13) PMID:34206573
- Barrass JD, et al. (2015) Transcriptome-wide RNA processing kinetics revealed using extremely short 4tU labeling. Genome Biol 16:282 PMID:26679539
- Rodríguez-Galán O, et al. (2015) Immature large ribosomal subunits containing the 7S pre-rRNA can engage in translation in Saccharomyces cerevisiae. RNA Biol 12(8):838-46 PMID:26151772
- Álvarez-Ainza ML, et al. (2015) Genomic diversity of Saccharomyces cerevisiae yeasts associated with alcoholic fermentation of bacanora produced by artisanal methods. Appl Biochem Biotechnol 175(5):2668-76 PMID:25561061
- Bautista-Santos A and Zinker S (2014) The P1/P2 protein heterodimers assemble to the ribosomal stalk at the moment when the ribosome is committed to translation but not to the native 60S ribosomal subunit in Saccharomyces cerevisiae. Biochemistry 53(25):4105-12 PMID:24922111
- Charron G, et al. (2014) Exploring the northern limit of the distribution of Saccharomyces cerevisiae and Saccharomyces paradoxus in North America. FEMS Yeast Res 14(2):281-8 PMID:24119009
- Gamalinda M, et al. (2014) A hierarchical model for assembly of eukaryotic 60S ribosomal subunit domains. Genes Dev 28(2):198-210 PMID:24449272
- Hamperl S, et al. (2014) Compositional and structural analysis of selected chromosomal domains from Saccharomyces cerevisiae. Nucleic Acids Res 42(1):e2 PMID:24106087
- Talkish J, et al. (2014) Mod-seq: high-throughput sequencing for chemical probing of RNA structure. RNA 20(5):713-20 PMID:24664469
- Tofalo R, et al. (2014) Genetic diversity of FLO1 and FLO5 genes in wine flocculent Saccharomyces cerevisiae strains. Int J Food Microbiol 191:45-52 PMID:25218464
- Tofalo R, et al. (2014) Biodiversity study of wine yeasts belonging to the "terroir" of Montepulciano d'Abruzzo "Colline Teramane" revealed Saccharomyces cerevisiae strains exhibiting atypical and unique 5.8S-ITS restriction patterns. Food Microbiol 39:7-12 PMID:24387846
- Bezerra-Bussoli C, et al. (2013) Yeast diversity isolated from grape musts during spontaneous fermentation from a Brazilian winery. Curr Microbiol 67(3):356-61 PMID:23636496
- Dembowski JA, et al. (2013) Identification of the binding site of Rlp7 on assembling 60S ribosomal subunits in Saccharomyces cerevisiae. RNA 19(12):1639-47 PMID:24129494
- Lebaron S, et al. (2013) Rrp5 binding at multiple sites coordinates pre-rRNA processing and assembly. Mol Cell 52(5):707-19 PMID:24239293
- Di Maio S, et al. (2012) Biodiversity of indigenous Saccharomyces populations from old wineries of south-eastern Sicily (Italy): preservation and economic potential. PLoS One 7(2):e30428 PMID:22393353
- Jakovljevic J, et al. (2012) Ribosomal proteins L7 and L8 function in concert with six A₃ assembly factors to propagate assembly of domains I and II of 25S rRNA in yeast 60S ribosomal subunits. RNA 18(10):1805-22 PMID:22893726
- Stumpferl SW, et al. (2012) Natural genetic variation in yeast longevity. Genome Res 22(10):1963-73 PMID:22955140
- Ben-Shem A, et al. (2011) The structure of the eukaryotic ribosome at 3.0 Å resolution. Science 334(6062):1524-9 PMID:22096102
- Chovanová K, et al. (2011) Selection and identification of autochthonous yeasts in Slovakian wine samples using a rapid and reliable three-step approach. Lett Appl Microbiol 53(2):231-7 PMID:21645017
- Clavijo A, et al. (2011) Effect of the use of commercial Saccharomyces strains in a newly established winery in Ronda (Málaga, Spain). Antonie Van Leeuwenhoek 99(3):727-31 PMID:20886291
- Ganley AR and Kobayashi T (2011) Monitoring the rate and dynamics of concerted evolution in the ribosomal DNA repeats of Saccharomyces cerevisiae using experimental evolution. Mol Biol Evol 28(10):2883-91 PMID:21546356
- Hesham Ael-L and Mohamed H (2011) Molecular genetic identification of yeast strains isolated from egyptian soils for solubilization of inorganic phosphates and growth promotion of corn plants. J Microbiol Biotechnol 21(1):55-61 PMID:21301193
- Huber A, et al. (2011) Sch9 regulates ribosome biogenesis via Stb3, Dot6 and Tod6 and the histone deacetylase complex RPD3L. EMBO J 30(15):3052-64 PMID:21730963
- Iglesias-Gato D, et al. (2011) Guanine nucleotide pool imbalance impairs multiple steps of protein synthesis and disrupts GCN4 translational control in Saccharomyces cerevisiae. Genetics 187(1):105-22 PMID:20980241
- Jeyaram K, et al. (2011) Geographical markers for Saccharomyces cerevisiae strains with similar technological origins domesticated for rice-based ethnic fermented beverages production in North East India. Antonie Van Leeuwenhoek 100(4):569-78 PMID:21717205
- Leshin JA, et al. (2011) High throughput structural analysis of yeast ribosomes using hSHAPE. RNA Biol 8(3):478-87 PMID:21508682
- N'guessan KF, et al. (2011) Identification of yeasts during alcoholic fermentation of tchapalo, a traditional sorghum beer from Côte d'Ivoire. Antonie Van Leeuwenhoek 99(4):855-64 PMID:21318423
- Sahasranaman A, et al. (2011) Assembly of Saccharomyces cerevisiae 60S ribosomal subunits: role of factors required for 27S pre-rRNA processing. EMBO J 30(19):4020-32 PMID:21926967
- Armache JP, et al. (2010) Localization of eukaryote-specific ribosomal proteins in a 5.5-Å cryo-EM map of the 80S eukaryotic ribosome. Proc Natl Acad Sci U S A 107(46):19754-9 PMID:20974910
- Armache JP, et al. (2010) Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution. Proc Natl Acad Sci U S A 107(46):19748-53 PMID:20980660
- Ben-Shem A, et al. (2010) Crystal structure of the eukaryotic ribosome. Science 330(6008):1203-9 PMID:21109664
- Davey RP, et al. (2010) TURNIP: tracking unresolved nucleotide polymorphisms in large hard-to-assemble regions of repetitive DNA sequence. Bioinformatics 26(22):2908-9 PMID:20926422
- Merl J, et al. (2010) Analysis of ribosome biogenesis factor-modules in yeast cells depleted from pre-ribosomes. Nucleic Acids Res 38(9):3068-80 PMID:20100801
- Ocón E, et al. (2010) Presence of non-Saccharomyces yeasts in cellar equipment and grape juice during harvest time. Food Microbiol 27(8):1023-7 PMID:20832680
- Petrov A and Puglisi JD (2010) Site-specific labeling of Saccharomyces cerevisiae ribosomes for single-molecule manipulations. Nucleic Acids Res 38(13):e143 PMID:20501598
- Pierson J, et al. (2010) Improving the technique of vitreous cryo-sectioning for cryo-electron tomography: electrostatic charging for section attachment and implementation of an anti-contamination glove box. J Struct Biol 169(2):219-25 PMID:19822214
- Sengupta J, et al. (2010) Characterization of the nuclear export adaptor protein Nmd3 in association with the 60S ribosomal subunit. J Cell Biol 189(7):1079-86 PMID:20584915
- Thomson E and Tollervey D (2010) The final step in 5.8S rRNA processing is cytoplasmic in Saccharomyces cerevisiae. Mol Cell Biol 30(4):976-84 PMID:20008552
- Vrancken G, et al. (2010) Yeast species composition differs between artisan bakery and spontaneous laboratory sourdoughs. FEMS Yeast Res 10(4):471-81 PMID:20384785
- Harada Y, et al. (2009) Oligosaccharyltransferase directly binds to ribosome at a location near the translocon-binding site. Proc Natl Acad Sci U S A 106(17):6945-9 PMID:19365066
- Oeffinger M, et al. (2009) Rrp17p is a eukaryotic exonuclease required for 5' end processing of Pre-60S ribosomal RNA. Mol Cell 36(5):768-81 PMID:20005841
- Ozsolak F, et al. (2009) Direct RNA sequencing. Nature 461(7265):814-8 PMID:19776739
- Pöll G, et al. (2009) rRNA maturation in yeast cells depleted of large ribosomal subunit proteins. PLoS One 4(12):e8249 PMID:20011513
- Tavenet A, et al. (2009) Genome-wide location analysis reveals a role for Sub1 in RNA polymerase III transcription. Proc Natl Acad Sci U S A 106(34):14265-70 PMID:19706510
- Decatur WA and Schnare MN (2008) Different mechanisms for pseudouridine formation in yeast 5S and 5.8S rRNAs. Mol Cell Biol 28(10):3089-100 PMID:18332121
- El Hage A, et al. (2008) Efficient termination of transcription by RNA polymerase I requires the 5' exonuclease Rat1 in yeast. Genes Dev 22(8):1069-81 PMID:18413717
- Granato DC, et al. (2008) Nop53p interacts with 5.8S rRNA co-transcriptionally, and regulates processing of pre-rRNA by the exosome. FEBS J 275(16):4164-78 PMID:18631361
- Mroczek S and Kufel J (2008) Apoptotic signals induce specific degradation of ribosomal RNA in yeast. Nucleic Acids Res 36(9):2874-88 PMID:18385160
- González SS, et al. (2007) Molecular identification and characterization of wine yeasts isolated from Tenerife (Canary Island, Spain). J Appl Microbiol 102(4):1018-25 PMID:17381745
- Acker MG, et al. (2006) Interaction between eukaryotic initiation factors 1A and 5B is required for efficient ribosomal subunit joining. J Biol Chem 281(13):8469-75 PMID:16461768
- Bradbury JE, et al. (2006) A homozygous diploid subset of commercial wine yeast strains. Antonie Van Leeuwenhoek 89(1):27-37 PMID:16328862
- Comitini F and Ciani M (2006) Survival of inoculated Saccharomyces cerevisiae strain on wine grapes during two vintages. Lett Appl Microbiol 42(3):248-53 PMID:16478512
- Faber AW, et al. (2006) 5'-end formation of yeast 5.8SL rRNA is an endonucleolytic event. Biochem Biophys Res Commun 345(2):796-802 PMID:16701559
- González SS, et al. (2006) Natural hybrids from Saccharomyces cerevisiae, Saccharomyces bayanus and Saccharomyces kudriavzevii in wine fermentations. FEMS Yeast Res 6(8):1221-34 PMID:17156019
- Laferté A, et al. (2006) The transcriptional activity of RNA polymerase I is a key determinant for the level of all ribosome components. Genes Dev 20(15):2030-40 PMID:16882981
- Xiao S, et al. (2006) Functional characterization of the conserved amino acids in Pop1p, the largest common protein subunit of yeast RNases P and MRP. RNA 12(6):1023-37 PMID:16618965
- De Marchis ML, et al. (2005) Rrp15p, a novel component of pre-ribosomal particles required for 60S ribosome subunit maturation. RNA 11(4):495-502 PMID:15769876
- Divol B and Lonvaud-Funel A (2005) Evidence for viable but nonculturable yeasts in botrytis-affected wine. J Appl Microbiol 99(1):85-93 PMID:15960668
- Flores Berrios EP, et al. (2005) The uses of AFLP for detecting DNA polymorphism, genotype identification and genetic diversity between yeasts isolated from Mexican agave-distilled beverages and from grape musts. Lett Appl Microbiol 41(2):147-52 PMID:16033512
- Li X, et al. (2004) Identification of a functional core in the RNA component of RNase MRP of budding yeasts. Nucleic Acids Res 32(12):3703-11 PMID:15254272
- Morrissey WF, et al. (2004) The role of indigenous yeasts in traditional Irish cider fermentations. J Appl Microbiol 97(3):647-55 PMID:15281947
- Pertschy B, et al. (2004) Diazaborine treatment of yeast cells inhibits maturation of the 60S ribosomal subunit. Mol Cell Biol 24(14):6476-87 PMID:15226447
- Korabecná M, et al. (2003) Primers ITS1, ITS2 and ITS4 detect the intraspecies variability in the internal transcribed spacers and 5.8S rRNA gene region in clinical isolates of fungi. Folia Microbiol (Praha) 48(2):233-8 PMID:12800508
- Las Heras-Vazquez FJ, et al. (2003) Identification of yeast species from orange fruit and juice by RFLP and sequence analysis of the 5.8S rRNA gene and the two internal transcribed spacers. FEMS Yeast Res 3(1):3-9 PMID:12702240
- Peng WT, et al. (2003) A panoramic view of yeast noncoding RNA processing. Cell 113(7):919-33 PMID:12837249
- Phillips S and Butler JS (2003) Contribution of domain structure to the RNA 3' end processing and degradation functions of the nuclear exosome subunit Rrp6p. RNA 9(9):1098-107 PMID:12923258
- Sipiczki M (2003) Candida zemplinina sp. nov., an osmotolerant and psychrotolerant yeast that ferments sweet botrytized wines. Int J Syst Evol Microbiol 53(Pt 6):2079-83 PMID:14657149
- van der Aa Kühle A and Jespersen L (2003) The taxonomic position of Saccharomyces boulardii as evaluated by sequence analysis of the D1/D2 domain of 26S rDNA, the ITS1-5.8S rDNA-ITS2 region and the mitochondrial cytochrome-c oxidase II gene. Syst Appl Microbiol 26(4):564-71 PMID:14666985
- Côté CA, et al. (2002) Dynamic conformational model for the role of ITS2 in pre-rRNA processing in yeast. RNA 8(6):786-97 PMID:12088151
- George R, et al. (2002) The nascent polypeptide-associated complex (NAC) promotes interaction of ribosomes with the mitochondrial surface in vivo. FEBS Lett 516(1-3):213-6 PMID:11959135
- Oeffinger M, et al. (2002) Yeast Pescadillo is required for multiple activities during 60S ribosomal subunit synthesis. RNA 8(5):626-36 PMID:12022229
- Côté CA and Peculis BA (2001) Role of the ITS2-proximal stem and evidence for indirect recognition of processing sites in pre-rRNA processing in yeast. Nucleic Acids Res 29(10):2106-16 PMID:11353080
- Esteve-Zarzoso B, et al. (2001) Yeast population dynamics during the fermentation and biological aging of sherry wines. Appl Environ Microbiol 67(5):2056-61 PMID:11319081
- Kobayashi T, et al. (2001) Identification of DNA cis elements essential for expansion of ribosomal DNA repeats in Saccharomyces cerevisiae. Mol Cell Biol 21(1):136-47 PMID:11113188
- Muth GW, et al. (2001) pH-dependent conformational flexibility within the ribosomal peptidyl transferase center. RNA 7(10):1403-15 PMID:11680845
- Briones C and Ballesta JP (2000) Conformational changes induced in the Saccharomyces cerevisiae GTPase-associated rRNA by ribosomal stalk components and a translocation inhibitor. Nucleic Acids Res 28(22):4497-505 PMID:11071938
- Fischer G, et al. (2000) Chromosomal evolution in Saccharomyces. Nature 405(6785):451-4 PMID:10839539
- Geerlings TH, et al. (2000) The final step in the formation of 25S rRNA in Saccharomyces cerevisiae is performed by 5'-->3' exonucleases. RNA 6(12):1698-703 PMID:11142370
- Josepa S, et al. (2000) PCR differentiation of Saccharomyces cerevisiae from Saccharomyces bayanus/Saccharomyces pastorianus using specific primers. FEMS Microbiol Lett 193(2):255-9 PMID:11111033
- Menetret JF, et al. (2000) The structure of ribosome-channel complexes engaged in protein translocation. Mol Cell 6(5):1219-32 PMID:11106759
- Ward TR, et al. (2000) Ribosomal DNA replication fork barrier and HOT1 recombination hot spot: shared sequences but independent activities. Mol Cell Biol 20(13):4948-57 PMID:10848619
- van Hoof A, et al. (2000) Three conserved members of the RNase D family have unique and overlapping functions in the processing of 5S, 5.8S, U4, U5, RNase MRP and RNase P RNAs in yeast. EMBO J 19(6):1357-65 PMID:10716935
- Allmang C, et al. (1999) Functions of the exosome in rRNA, snoRNA and snRNA synthesis. EMBO J 18(19):5399-410 PMID:10508172
- Granchi L, et al. (1999) Rapid detection and quantification of yeast species during spontaneous wine fermentation by PCR-RFLP analysis of the rDNA ITS region. J Appl Microbiol 87(6):949-956 PMID:10692077
- Briggs MW, et al. (1998) Rrp6p, the yeast homologue of the human PM-Scl 100-kDa autoantigen, is essential for efficient 5.8 S rRNA 3' end formation. J Biol Chem 273(21):13255-63 PMID:9582370
- Lafontaine DL, et al. (1998) The box H + ACA snoRNAs carry Cbf5p, the putative rRNA pseudouridine synthase. Genes Dev 12(4):527-37 PMID:9472021
- Peculis BA and Greer CL (1998) The structure of the ITS2-proximal stem is required for pre-rRNA processing in yeast. RNA 4(12):1610-22 PMID:9848657
- Hong B, et al. (1997) Nop2p is required for pre-rRNA processing and 60S ribosome subunit synthesis in yeast. Mol Cell Biol 17(1):378-88 PMID:8972218
- Srikantha T, et al. (1994) Partial nucleotide sequence of a single ribosomal RNA coding region and secondary structure of the large subunit 25 s rRNA of Candida albicans. Curr Genet 26(4):321-8 PMID:7882426
- Nogi Y, et al. (1991) Synthesis of large rRNAs by RNA polymerase II in mutants of Saccharomyces cerevisiae defective in RNA polymerase I. Proc Natl Acad Sci U S A 88(9):3962-6 PMID:2023944
- Tollervey D (1987) A yeast small nuclear RNA is required for normal processing of pre-ribosomal RNA. EMBO J 6(13):4169-75 PMID:3327689
- Nagamatsu K, et al. (1984) Conformational study of low molecular weight RNAs in solution by fluorescent probe. Nucleic Acids Symp Ser 139-42 PMID:6395094
- Piper PW, et al. (1984) Processing of the 3' sequence extensions upon the 5S rRNA of a mutant yeast in Xenopus laevis germinal vesicle extract. Eur J Biochem 141(1):115-8 PMID:6327301
- Bell GI, et al. (1977) Ribosomal RNA genes of Saccharomyces cerevisiae. I. Physical map of the repeating unit and location of the regions coding for 5 S, 5.8 S, 18 S, and 25 S ribosomal RNAs. J Biol Chem 252(22):8118-25 PMID:334774
- Nath K and Bollon AP (1977) Organization of the yeast ribosomal RNA gene cluster via cloning and restriction analysis. J Biol Chem 252(18):6562-71 PMID:330533
- Helser TL and McLaughlin CS (1975) Small ribonucleic acid molecules produced during ribosome biosynthesis in Saccharomyces cerevisiae. J Biol Chem 250(6):2003-7 PMID:1090615
- Wejksnora PJ and Haber JE (1974) Methionine-dependent synthesis of ribosomal ribonucleic acid during sporulation and vegetative growth of Saccharomyces cerevisiae. J Bacteriol 120(3):1344-55 PMID:4612017
- Udem SA, et al. (1971) Small ribosomal ribonucleic acid species of Saccharomyces cerevisiae. J Bacteriol 105(1):101-6 PMID:5540996
Reviews
No reviews curated.
Download References (.nbib)
- Vanden Broeck A and Klinge S (2024) Eukaryotic Ribosome Assembly. Annu Rev Biochem 93(1):189-210 PMID:38768392
- Bohnsack KE, et al. (2023) Making ends meet: a universal driver of large ribosomal subunit biogenesis. Trends Biochem Sci 48(3):213-215 PMID:36207216
- Massari LF and Marston AL (2023) Chromosome organization by fine-tuning an ATPase. Genes Dev 37(7-8):259-260 PMID:37045607
- Schneider C and Bohnsack KE (2023) Caught in the act-Visualizing ribonucleases during eukaryotic ribosome assembly. Wiley Interdiscip Rev RNA 14(4):e1766 PMID:36254602
- Tomecki R, et al. (2017) Comparison of preribosomal RNA processing pathways in yeast, plant and human cells - focus on coordinated action of endo- and exoribonucleases. FEBS Lett 591(13):1801-1850 PMID:28524231
- Henras AK, et al. (2015) An overview of pre-ribosomal RNA processing in eukaryotes. Wiley Interdiscip Rev RNA 6(2):225-42 PMID:25346433
- Albert B, et al. (2012) Regulation of ribosomal RNA production by RNA polymerase I: does elongation come first? Genet Res Int 2012:276948 PMID:22567380
- Jenner L, et al. (2012) Crystal structure of the 80S yeast ribosome. Curr Opin Struct Biol 22(6):759-67 PMID:22884264
- Schneider DA (2012) RNA polymerase I activity is regulated at multiple steps in the transcription cycle: recent insights into factors that influence transcription elongation. Gene 493(2):176-84 PMID:21893173
- Wilson DN and Doudna Cate JH (2012) The structure and function of the eukaryotic ribosome. Cold Spring Harb Perspect Biol 4(5) PMID:22550233
- Kobayashi T (2011) How does genome instability affect lifespan?: roles of rDNA and telomeres. Genes Cells 16(6):617-24 PMID:21605287
- Kobayashi T (2011) Regulation of ribosomal RNA gene copy number and its role in modulating genome integrity and evolutionary adaptability in yeast. Cell Mol Life Sci 68(8):1395-403 PMID:21207101
- Aragón L (2010) Ribosomal genes: safety in numbers. Curr Biol 20(8):R368-70 PMID:21749960
- Torres-Machorro AL, et al. (2010) Ribosomal RNA genes in eukaryotic microorganisms: witnesses of phylogeny? FEMS Microbiol Rev 34(1):59-86 PMID:19930463
- Zemp I and Kutay U (2007) Nuclear export and cytoplasmic maturation of ribosomal subunits. FEBS Lett 581(15):2783-93 PMID:17509569
- Granneman S and Baserga SJ (2005) Crosstalk in gene expression: coupling and co-regulation of rDNA transcription, pre-ribosome assembly and pre-rRNA processing. Curr Opin Cell Biol 17(3):281-6 PMID:15901498
- Dez C and Tollervey D (2004) Ribosome synthesis meets the cell cycle. Curr Opin Microbiol 7(6):631-7 PMID:15556036
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- Warner JR (2001) Nascent ribosomes. Cell 107(2):133-6 PMID:11672521
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Gene Ontology Literature
Paper(s) associated with one or more GO (Gene Ontology) terms in SGD for the specified gene.
No gene ontology literature curated.
Interaction Literature
Paper(s) associated with evidence supporting a physical or genetic interaction between the
specified gene and another gene in SGD. Currently, all interaction evidence is obtained from
BioGRID.
No interaction literature curated.
Download References (.nbib)
- Pöll G, et al. (2021) Analysis of subunit folding contribution of three yeast large ribosomal subunit proteins required for stabilisation and processing of intermediate nuclear rRNA precursors. PLoS One 16(11):e0252497 PMID:34813592
- Ohmayer U, et al. (2013) Studies on the assembly characteristics of large subunit ribosomal proteins in S. cerevisae. PLoS One 8(7):e68412 PMID:23874617
- Fernández-Pevida A, et al. (2012) Yeast ribosomal protein L40 assembles late into precursor 60 S ribosomes and is required for their cytoplasmic maturation. J Biol Chem 287(45):38390-407 PMID:22995916
- Granneman S, et al. (2011) A cluster of ribosome synthesis factors regulate pre-rRNA folding and 5.8S rRNA maturation by the Rat1 exonuclease. EMBO J 30(19):4006-19 PMID:21811236
- Hackmann A, et al. (2011) The mRNA export factor Npl3 mediates the nuclear export of large ribosomal subunits. EMBO Rep 12(10):1024-31 PMID:21852791