Phenotype Help

HDA3 / YPR179C Phenotype

Phenotype annotations for a gene are curated single mutant phenotypes that require an observable (e.g., "cell shape"), a qualifier (e.g., "abnormal"), a mutant type (e.g., null), strain background, and a reference. In addition, annotations are classified as classical genetics or high-throughput (e.g., large scale survey, systematic mutation set). Whenever possible, allele information and additional details are provided.


Summary
Non-essential gene in reference strain S288C; null mutant shows increased acetylation of histone H2B and H3, and increased gene silencing at telomeres; in systematic studies, null mutation increases competitive fitness and resistance to manganese, but lowers mutation frequency, and sensitivity to BAPTA, arsenite, amitrole and Congo Red

Annotations

A phenotype is defined as an observable (e.g., apoptosis) and a qualifier (e.g., increased). There may be more than one row with the same phenotype if that phenotype was observed in separate studies or in different conditions, strains, alleles, etc.

39 entries for 21 phenotypes


Increase the total number of rows showing on this page using the pull-down located below the table, or use the page scroll at the table's top right to browse through the table's pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table; click on the small "i" buttons located within a cell for an annotation to view further details.

PhenotypeExperiment TypeMutant InformationStrain BackgroundChemicalDetailsReference
auxotrophy
homozygous diploid, systematic mutation setnull
Allele: hda3-Δ
S288C myo-inositolVilla-García MJ, et al. (2011) PMID:21136082
chemical compound accumulation: abnormal
systematic mutation setnull
Allele: hda3-Δ
S288C alpha-amino acidDetails: Significantly altered free amino acid profile (X^2- test adjusted p < 0.01), showing 2 simultaneous amino acid changes (Z-test, adjusted p < 0.01)
Mülleder M, et al. (2016) PMID:27693354
chemical compound accumulation: increased
homozygous diploidnull
Allele: hda3-Δ
S288C0.1 mM potassium tellurite, tellurium atomOttosson LG, et al. (2010) PMID:20675578
chemical compound accumulation: increased
homozygous diploid null
Allele: hda3-Δ
S288C cobalt(2+)Treatment: cobalt dichloride, 1 mM
Details: cobalt sensitive null mutant accumulates cobalt after treatment with CoCl2 for 12 hrs
Zhao YY, et al. (2020) PMID:31904504
chemical compound accumulation: increased
systematic mutation setnull
Allele: hda3-Δ
S288C alanineMülleder M, et al. (2016) PMID:27693354
chemical compound accumulation: increased
systematic mutation setnull
Allele: hda3-Δ
S288C aspartate(1-)Mülleder M, et al. (2016) PMID:27693354
chemical compound accumulation: increased
homozygous diploid null
Allele: hda3-Δ
S288C reactive oxygen speciesTreatment: cobalt dichloride, 1 mM
Details: increased intracellular accumulation of ROS in cells treated with CoCl2 for 12 hrs; possible defect in scavenging oxidative stress
Zhao YY, et al. (2020) PMID:31904504
competitive fitness: decreased
competitive growth

fitness profiling using complete deletion alleles

null
Allele: hda3-Δ
S288CMedia: minimal medium
Details: Relative fitness score: 0.91
Breslow DK, et al. (2008) PMID:18622397
competitive fitness: decreased
systematic mutation setnull
Allele: hda3-Δ
S288C ethanolQian W, et al. (2012) PMID:23103169
competitive fitness: decreased
systematic mutation setnull
Allele: hda3-Δ
S288CMedia: glycerol medium, YPG
Qian W, et al. (2012) PMID:23103169
Showing 1 to 10 of 39 entries

Shared Phenotypes

This diagram displays phenotype observables (purple squares) that are shared between the given gene (yellow circle) and other genes (gray circles) based on the number of phenotype observables shared (adjustable using the slider at the bottom).


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