GAL11 / YOL051W Overview


Standard Name
GAL11 1
Systematic Name
YOL051W
SGD ID
SGD:S000005411
Aliases
MED15 7 , RAR3 8 , SDS4 9 , SPT13 10 , ABE1
Feature Type
ORF , Verified
Description
Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; affects transcription by acting as target of activators and repressors; forms part of the tail domain of mediator 2 3 4 5 6
Name Description
GALactose metabolism 1
Comparative Info
Integrated model organism details available at the Alliance of Genome Resources website
Sequence Details

Sequence

The S. cerevisiae Reference Genome sequence is derived from laboratory strain S288C. Download DNA or protein sequence, view genomic context and coordinates. Click "Sequence Details" to view all sequence information for this locus, including that for other strains.


Protein Details

Protein

Basic sequence-derived (length, molecular weight, isoelectric point) and experimentally-determined (median abundance, median absolute deviation) protein information. Click "Protein Details" for further information about the protein such as half-life, abundance, domains, domains shared with other proteins, protein sequence retrieval for various strains, physico-chemical properties, protein modification sites, and external identifiers for the protein.


Length (a.a.)
1081
Mol. Weight (Da)
120350.9
Isoelectric Point
10.49
Median Abundance (molecules/cell)
3123 +/- 1129
Gene Ontology Details

Gene Ontology

GO Annotations consist of four mandatory components: a gene product, a term from one of the three Gene Ontology (GO) controlled vocabularies (Molecular Function, Biological Process, and Cellular Component), a reference, and an evidence code. SGD has manually curated and high-throughput GO Annotations, both derived from the literature, as well as computational, or predicted, annotations. Click "Gene Ontology Details" to view all GO information and evidence for this locus as well as biological processes it shares with other genes.


Summary
Subunit of the core mediator complex; functions as a RNA pol II coactivator involved in preinitiation complex assembly; binds TFIIE and TFIIH-class transcription factors; recruits Gcn4p to the transcriptional machinery; involved in regulation of transcription from RNA polymerase II promoters, positive regulation of invasive growth in response to glucose limitation, and regulation of core mediator complex localization to chromosomes in response to heat shock

View computational annotations

Cellular Component

Manually Curated

Complex

Macromolecular complex annotations are imported from the Complex Portal. These annotations have been derived from physical molecular interaction evidence extracted from the literature and cross-referenced in the entry, or by curator inference from information on homologs in closely related species or by inference from scientific background.


Phenotype Details

Phenotype

Phenotype annotations for a gene are curated single mutant phenotypes that require an observable (e.g., "cell shape"), a qualifier (e.g., "abnormal"), a mutant type (e.g., null), strain background, and a reference. In addition, annotations are classified as classical genetics or high-throughput (e.g., large scale survey, systematic mutation set). Whenever possible, allele information and additional details are provided. Click "Phenotype Details" to view all phenotype annotations and evidence for this locus as well as phenotypes it shares with other genes.


Interaction Details

Interaction

Interaction annotations are curated by BioGRID and include physical or genetic interactions observed between at least two genes. An interaction annotation is composed of the interaction type, name of the interactor, assay type (e.g., Two-Hybrid), annotation type (e.g., manual or high-throughput), and a reference, as well as other experimental details. Click "Interaction Details" to view all interaction annotations and evidence for this locus, including an interaction visualization.


321 total interactions for 166 unique genes

Physical Interactions

  • Affinity Capture-MS: 53
  • Affinity Capture-RNA: 8
  • Affinity Capture-Western: 66
  • Co-crystal Structure: 2
  • Co-localization: 3
  • Co-purification: 13
  • Far Western: 1
  • PCA: 38
  • Protein-peptide: 2
  • Reconstituted Complex: 20
  • Two-hybrid: 5

Genetic Interactions

  • Dosage Lethality: 1
  • Dosage Rescue: 18
  • Negative Genetic: 37
  • Phenotypic Enhancement: 4
  • Phenotypic Suppression: 7
  • Positive Genetic: 8
  • Synthetic Growth Defect: 17
  • Synthetic Lethality: 12
  • Synthetic Rescue: 6
Regulation Details

Regulation

The number of putative Regulators (genes that regulate it) and Targets (genes it regulates) for the given locus, based on experimental evidence. This evidence includes data generated through high-throughput techniques. Click "Regulation Details" to view all regulation annotations, shared GO enrichment among regulation Targets, and a regulator/target diagram for the locus.


Regulators
5
Targets
12
Expression Details

Expression

Expression data are derived from records contained in the Gene Expression Omnibus (GEO), and are first log2 transformed and normalized. Referenced datasets may contain one or more condition(s), and as a result there may be a greater number of conditions than datasets represented in a single clickable histogram bar. The histogram division at 0.0 separates the down-regulated (green) conditions and datasets from those that are up-regulated (red). Click "Expression Details" to view all expression annotations and details for this locus, including a visualization of genes that share a similar expression pattern.


Literature Details

Literature

All manually curated literature for the specified gene, organized into topics according to their relevance to the gene (Primary Literature, Additional Literature, or Review). Click "Literature Details" to view all literature information for this locus, including shared literature between genes.


Primary
119
Additional
118
Reviews
49

Resources