Protein Help

PRC1 / YMR297W Protein

Protein abundance data, domains, shared domains with other proteins, protein sequence retrieval for various strains, sequence-based physico-chemical properties, protein modification sites, and external identifiers for the protein.


Aliases
CPY 24 , LBC1 , CPY1 25
Protein Product
carboxypeptidase C PRC1
Feature Type
ORF , Verified
EC Number
3.4.16.5

AlphaFold Protein Structure

AlphaFold, developed by DeepMind, is an AI program that accurately predicts protein structures from amino acid sequences, enabling visualization of protein conformations. The predicted structures can be accessed through the Protein Data Bank (PDB) and AlphaFold Protein Structure Database.


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Model Confidence

Very high
Confident
Low
Very low

Experimental Data

Contains experimentally-derived protein half-life data obtained using stable isotope labeling by amino acids (SILAC) coupled with mass spectrometry. This section also contains protein abundance data for both untreated and treated cells obtained from over 20 studies. These data have been normalized and converted to a common unit of molecules per cell.


Protein Half Life

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ExperimentResultReference
half-life33.5 minChristiano R, et al. (2014)

Protein Abundance

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Abundance (molecules/cell)MediaTreatmentTreatment timeFold ChangeVisualizationStrain backgroundOriginal ReferenceReference
1436SDuntreatedconfocal microscopy evidenceS288CBreker M, et al. (2013)Ho B, et al. (2018)
1277SD2 mM 1,4-dithiothreitol2 hrconfocal microscopy evidenceS288CBreker M, et al. (2013)Ho B, et al. (2018)
1407SD1 mM hydrogen peroxide1 hrconfocal microscopy evidenceS288CBreker M, et al. (2013)Ho B, et al. (2018)
1608SDuntreatedconfocal microscopy evidenceS288CChong YT, et al. (2015)Ho B, et al. (2018)
4972SD200 ng/ml sirolimus700 minconfocal microscopy evidenceS288CChong YT, et al. (2015)Ho B, et al. (2018)
Showing 1 to 5 of 21 entries

Domains and Classification - S288C

Collection of computationally identified domains and motifs, as determined by InterProScan analysis; includes protein coordinates for the domain, a domain Description, a Source and corresponding accession ID, and the number of S. cerevisiae genes that share the same domain.


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Gene Protein Coordinates Accession ID Description Source No. of Genes with Domain

Domain Locations

Visual representation of the locations of the domains within the protein, as listed in the Domains and Classification table. Each row displays the domain(s) derived from a different Source, with domains color-coded according to this Source.

Scroll over a domain to view its exact coordinates and its Description.

Shared Domains

This diagram displays domains (colored squares) shared between the given protein (yellow circle) and other proteins (gray circles); the domains are color-coded according to their source, as displayed in the Domain Locations table, above.

Reset

Click on a gene or domain name to go to its specific page within SGD; drag any of the gene or domain objects around within the visualization for easier viewing; click “Reset” to automatically redraw the diagram.

Alleles

Curated mutant alleles for the specified gene, listed alphabetically. Click on the allele name to open the allele page. Click "SGD search" to view all alleles in search results.


prc1-Δ

View all PRC1 alleles in SGD search

Sequence

Protein sequence for the given gene in S288C and other strains, when available. Use the pull-down menu under "Strain" to select the sequence for a specific strain. The displayed sequence can be downloaded in FASTA format as a .txt file. Amino acids displayed in blue represent modification sites. More detailed evidence for these modification sites is presented in the Post-translational Modifications table, located just below the protein sequence.


1 MKAFTSLLCG LGLSTTLAKA ISLQRPLGLD KDVLLQAAEK FGLDLDLDHL LKELDSNVLD
61 AWAQIEHLYP NQVMSLETST KPKFPEAIKT KKDWDFVVKN DAIENYQLRV NKIKDPKILG
121 IDPNVTQYTG YLDVEDEDKH FFFWTFESRN DPAKDPVILW LNGGPGCSSL TGLFFELGPS
181 SIGPDLKPIG NPYSWNSNAT VIFLDQPVNV GFSYSGSSGV SNTVAAGKDV YNFLELFFDQ
241 FPEYVNKGQD FHIAGESYAG HYIPVFASEI LSHKDRNFNL TSVLIGNGLT DPLTQYNYYE
301 PMACGEGGEP SVLPSEECSA MEDSLERCLG LIESCYDSQS VWSCVPATIY CNNAQLAPYQ
361 RTGRNVYDIR KDCEGGNLCY PTLQDIDDYL NQDYVKEAVG AEVDHYESCN FDINRNFLFA
421 GDWMKPYHTA VTDLLNQDLP ILVYAGDKDF ICNWLGNKAW TDVLPWKYDE EFASQKVRNW
481 TASITDEVAG EVKSYKHFTY LRVFNGGHMV PFDVPENALS MVNEWIHGGF SL*

* Blue amino acids indicate modification sites. More information below.

Post-translational Modifications - S288C

Modification sites for the protein in the selected strain, based on the presence of a residue in the specific strain, as inferred from experimental evidence.

8 entries for 4 sites

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SiteModificationModifierReference
N124N-glycosylated residuePoljak K, et al. (2018) PMID: 28993419
N124N-glycosylated residueZielinska DF, et al. (2012) PMID: 22633491
K476ubiquitinylated lysineBlaszczak E, et al. (2024) PMID: 38101750
K476ubiquitinylated lysineSwaney DL, et al. (2013) PMID: 23749301
N479N-glycosylated residueZielinska DF, et al. (2012) PMID: 22633491
N479N-glycosylated residuePoljak K, et al. (2018) PMID: 28993419
N479N-glycosylated residueCao L, et al. (2014) PMID: 24527708
K496monoacetylated residueHenriksen P, et al. (2012) PMID: 22865919
Showing 1 to 8 of 8 entries

Sequence-Based Physico-chemical Properties - S288C

Calculated protein properties, including amino acid composition, length, coding region calculations, and atomic composition.

Amino Acid Composition

Sort table using the arrow to the right of a column header to sort by that column; download all properties as a .txt file using the "Download Properties" button.

Amino AcidFrequencyPercentage
A315.83
C122.26
D438.08
E326.02
F285.26
G387.14
H112.07
I244.51
K295.45
L5410.15
M71.32
N346.39
P285.26
Q173.20
R112.07
S366.77
T244.51
V356.58
W122.26
Y264.89

Physical Details

Length (a.a): 532
Molecular Weight (Da): 59767.3
Isoelectric Point (pl): 4.32
Formula: C2704H4018N679O820S19
Aliphatic Index: 78.12
Instability Index: 39.28

Coding Region Translation Calculations

Codon Bias: 0.37
Codon Adaptation Index: 0.26
Frequence of Optimal Codons: 0.64
Hydropathicity of Protein: -0.28
Aromaticity Score: 0.12

Extinction Coefficients at 280nm

ALL Cys residues appear as half cystines: 105490.0
NO Cys residues appear as half cystines: 104740.0

Atomic Composition

Sort table using the arrow to the right of a column header to sort by that column; download all properties as a .txt file using the "Download Properties" button.

Atom Frequency Percentage

Data not found or not available for  S288C

External Identifiers

List of external identifiers for the protein from various database sources.

30 entries for 12 sources


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External IDSource
AN5442AspGD
orf19.1339CGD
2394DIP
3.4.16.5ExPASy
6323955GenBank/EMBL/DDBJ
X80836GenBank/EMBL/DDBJ
M15482GenBank/EMBL/DDBJ
115901GenBank/EMBL/DDBJ
61680222GenBank/EMBL/DDBJ
157830683GenBank/EMBL/DDBJ
Showing 1 to 10 of 30 entries

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