Literature Help
YMR045C Literature
All manually curated literature for the specified gene, organized by relevance to the gene and by
association with specific annotations to the gene in SGD. SGD gathers references via a PubMed search for
papers whose titles or abstracts contain “yeast” or “cerevisiae;” these papers are reviewed manually and
linked to relevant genes and literature topics by SGD curators.
Primary Literature
Literature that either focuses on the gene or contains information about function, biological role,
cellular location, phenotype, regulation, structure, or disease homologs in other species for the gene
or gene product.
No primary literature curated.
Download References (.nbib)
- Masumoto H, et al. (2024) The Ty1 retrotransposon harbors a DNA region that performs dual functions as both a gene silencing and chromatin insulator. Sci Rep 14(1):16641 PMID:39025990
- Beckwith SL, et al. (2023) An interchangeable prion-like domain is required for Ty1 retrotransposition. Proc Natl Acad Sci U S A 120(30):e2303358120 PMID:37459521
- Nguyen PQ, et al. (2023) Structural basis of Ty1 integrase tethering to RNA polymerase III for targeted retrotransposon integration. Nat Commun 14(1):1729 PMID:36977686
- Cottee MA, et al. (2021) Structure of a Ty1 restriction factor reveals the molecular basis of transposition copy number control. Nat Commun 12(1):5590 PMID:34552077
- Wang Y, et al. (2018) The cellular economy of the Saccharomyces cerevisiae zinc proteome. Metallomics 10(12):1755-1776 PMID:30358795
- Doh JH, et al. (2014) Co-translational localization of an LTR-retrotransposon RNA to the endoplasmic reticulum nucleates virus-like particle assembly sites. PLoS Genet 10(3):e1004219 PMID:24603646
- Checkley MA, et al. (2013) Ty1 gag enhances the stability and nuclear export of Ty1 mRNA. Traffic 14(1):57-69 PMID:22998189
- Carr M, et al. (2012) Evolutionary genomics of transposable elements in Saccharomyces cerevisiae. PLoS One 7(11):e50978 PMID:23226439
- Pandey M, et al. (2008) Kinetic pathway of pyrophosphorolysis by a retrotransposon reverse transcriptase. PLoS One 3(1):e1389 PMID:18167548
- Lesage P and Todeschini AL (2005) Happy together: the life and times of Ty retrotransposons and their hosts. Cytogenet Genome Res 110(1-4):70-90 PMID:16093660
- Lawler JF, et al. (2002) A nucleocapsid functionality contained within the amino terminus of the Ty1 protease that is distinct and separable from proteolytic activity. J Virol 76(1):346-54 PMID:11739699
- Uzun O and Gabriel A (2001) A Ty1 reverse transcriptase active-site aspartate mutation blocks transposition but not polymerization. J Virol 75(14):6337-47 PMID:11413300
- Kenna MA, et al. (1998) Invading the yeast nucleus: a nuclear localization signal at the C terminus of Ty1 integrase is required for transposition in vivo. Mol Cell Biol 18(2):1115-24 PMID:9448009
- Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 PMID:9582191
- Moore SP, et al. (1998) A Ty1 integrase nuclear localization signal required for retrotransposition. Mol Cell Biol 18(2):1105-14 PMID:9448008
Related Literature
Genes that share literature (indicated by the purple circles) with the specified gene (indicated by yellow circle).
Reset
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within the visualization for easier viewing and click “Reset” to automatically redraw the diagram.
Additional Literature
Papers that show experimental evidence for the gene or describe homologs in other species, but
for which the gene is not the paper’s principal focus.
No additional literature curated.
Download References (.nbib)
- Taguchi Y and Turki T (2021) Novel method for the prediction of drug-drug Interaction based on gene expression profiles. Eur J Pharm Sci 160:105742 PMID:33548411
- Servant G, et al. (2012) Tye7 regulates yeast Ty1 retrotransposon sense and antisense transcription in response to adenylic nucleotides stress. Nucleic Acids Res 40(12):5271-82 PMID:22379133
- Jung PP, et al. (2011) Ploidy influences cellular responses to gross chromosomal rearrangements in Saccharomyces cerevisiae. BMC Genomics 12:331 PMID:21711526
- Friedl AA, et al. (2010) Ty1 integrase overexpression leads to integration of non-Ty1 DNA fragments into the genome of Saccharomyces cerevisiae. Mol Genet Genomics 284(4):231-42 PMID:20677012
- Stanley D, et al. (2010) Retrotransposon expression in ethanol-stressed Saccharomyces cerevisiae. Appl Microbiol Biotechnol 87(4):1447-54 PMID:20393705
- Moore SP and Garfinkel DJ (2009) Functional analysis of N-terminal residues of ty1 integrase. J Virol 83(18):9502-11 PMID:19570857
- McLane LM, et al. (2008) The Ty1 integrase protein can exploit the classical nuclear protein import machinery for entry into the nucleus. Nucleic Acids Res 36(13):4317-26 PMID:18586821
- Yarrington RM, et al. (2007) Mn2+ suppressor mutations and biochemical communication between Ty1 reverse transcriptase and RNase H domains. J Virol 81(17):9004-12 PMID:17537863
- Pandey M, et al. (2004) Insights into the role of an active site aspartate in Ty1 reverse transcriptase polymerization. J Biol Chem 279(46):47840-8 PMID:15333632
- Kuthan M, et al. (2003) Domestication of wild Saccharomyces cerevisiae is accompanied by changes in gene expression and colony morphology. Mol Microbiol 47(3):745-54 PMID:12535073
- Boutabout M, et al. (2001) DNA synthesis fidelity by the reverse transcriptase of the yeast retrotransposon Ty1. Nucleic Acids Res 29(11):2217-22 PMID:11376139
- Lawler JF, et al. (2001) Frameshift signal transplantation and the unambiguous analysis of mutations in the yeast retrotransposon Ty1 Gag-Pol overlap region. J Virol 75(15):6769-75 PMID:11435555
- Merkulov GV, et al. (2001) Ty1 proteolytic cleavage sites are required for transposition: all sites are not created equal. J Virol 75(2):638-44 PMID:11134277
- Moore SP and Garfinkel DJ (2000) Correct integration of model substrates by Ty1 integrase. J Virol 74(24):11522-30 PMID:11090149
- Roth JF, et al. (2000) Possible regulatory function of the Saccharomyces cerevisiae Ty1 retrotransposon core protein. Yeast 16(10):921-32 PMID:10870103
Reviews
No reviews curated.
Gene Ontology Literature
Paper(s) associated with one or more GO (Gene Ontology) terms in SGD for the specified gene.
No gene ontology literature curated.
Download References (.nbib)
- Wang Y, et al. (2018) The cellular economy of the Saccharomyces cerevisiae zinc proteome. Metallomics 10(12):1755-1776 PMID:30358795
- Kenna MA, et al. (1998) Invading the yeast nucleus: a nuclear localization signal at the C terminus of Ty1 integrase is required for transposition in vivo. Mol Cell Biol 18(2):1115-24 PMID:9448009
- Kim JM, et al. (1998) Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Genome Res 8(5):464-78 PMID:9582191
Interaction Literature
Paper(s) associated with evidence supporting a physical or genetic interaction between the
specified gene and another gene in SGD. Currently, all interaction evidence is obtained from
BioGRID.
No interaction literature curated.
Download References (.nbib)
- Waltho A, et al. (2024) K48- and K63-linked ubiquitin chain interactome reveals branch- and length-specific ubiquitin interactors. Life Sci Alliance 7(8) PMID:38803224
- Kolhe JA, et al. (2023) The Hsp90 molecular chaperone governs client proteins by targeting intrinsically disordered regions. Mol Cell 83(12):2035-2044.e7 PMID:37295430
- Lehner MH, et al. (2022) Yeast Smy2 and its human homologs GIGYF1 and -2 regulate Cdc48/VCP function during transcription stress. Cell Rep 41(4):111536 PMID:36288698
- Gotor NL, et al. (2020) RNA-binding and prion domains: the Yin and Yang of phase separation. Nucleic Acids Res 48(17):9491-9504 PMID:32857852
- Oliete-Calvo P, et al. (2018) A role for Mog1 in H2Bub1 and H3K4me3 regulation affecting RNAPII transcription and mRNA export. EMBO Rep 19(11) PMID:30249596
- Hill SM, et al. (2016) Asymmetric Inheritance of Aggregated Proteins and Age Reset in Yeast Are Regulated by Vac17-Dependent Vacuolar Functions. Cell Rep 16(3):826-38 PMID:27373154
- Woodford MR, et al. (2016) Mps1 Mediated Phosphorylation of Hsp90 Confers Renal Cell Carcinoma Sensitivity and Selectivity to Hsp90 Inhibitors. Cell Rep 14(4):872-884 PMID:26804907
- Truman AW, et al. (2015) The quantitative changes in the yeast Hsp70 and Hsp90 interactomes upon DNA damage. Data Brief 2:12-5 PMID:26217697
- Truman AW, et al. (2015) Quantitative proteomics of the yeast Hsp70/Hsp90 interactomes during DNA damage reveal chaperone-dependent regulation of ribonucleotide reductase. J Proteomics 112:285-300 PMID:25452130
- Kurat CF, et al. (2014) Cell cycle-regulated oscillator coordinates core histone gene transcription through histone acetylation. Proc Natl Acad Sci U S A 111(39):14124-9 PMID:25228766
- Kaake RM, et al. (2010) Characterization of cell cycle specific protein interaction networks of the yeast 26S proteasome complex by the QTAX strategy. J Proteome Res 9(4):2016-29 PMID:20170199
- Ossareh-Nazari B, et al. (2010) Cdc48 and Ufd3, new partners of the ubiquitin protease Ubp3, are required for ribophagy. EMBO Rep 11(7):548-54 PMID:20508643
- Hasegawa Y, et al. (2008) Distinct roles for Khd1p in the localization and expression of bud-localized mRNAs in yeast. RNA 14(11):2333-47 PMID:18805955
- Graumann J, et al. (2004) Applicability of tandem affinity purification MudPIT to pathway proteomics in yeast. Mol Cell Proteomics 3(3):226-37 PMID:14660704
Regulation Literature
Paper(s) associated with one or more pieces of regulation evidence in SGD, as found on the
Regulation page.
No regulation literature curated.
Post-translational Modifications Literature
Paper(s) associated with one or more pieces of post-translational modifications evidence in SGD.
No post-translational modifications literature curated.
Download References (.nbib)
- Blaszczak E, et al. (2024) Dissecting Ubiquitylation and DNA Damage Response Pathways in the Yeast Saccharomyces cerevisiae Using a Proteome-Wide Approach. Mol Cell Proteomics 23(1):100695 PMID:38101750
- Zhou X, et al. (2021) Cross-compartment signal propagation in the mitotic exit network. Elife 10 PMID:33481703
- MacGilvray ME, et al. (2020) Phosphoproteome Response to Dithiothreitol Reveals Unique Versus Shared Features of Saccharomyces cerevisiae Stress Responses. J Proteome Res 19(8):3405-3417 PMID:32597660
- Fang NN, et al. (2014) Rsp5/Nedd4 is the main ubiquitin ligase that targets cytosolic misfolded proteins following heat stress. Nat Cell Biol 16(12):1227-37 PMID:25344756
- Rødkær SV, et al. (2014) Quantitative proteomics identifies unanticipated regulators of nitrogen- and glucose starvation. Mol Biosyst 10(8):2176-88 PMID:24909858
- Swaney DL, et al. (2013) Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation. Nat Methods 10(7):676-82 PMID:23749301
- Pultz D, et al. (2012) Global mapping of protein phosphorylation events identifies Ste20, Sch9 and the cell-cycle regulatory kinases Cdc28/Pho85 as mediators of fatty acid starvation responses in Saccharomyces cerevisiae. Mol Biosyst 8(3):796-803 PMID:22218487
- Holt LJ, et al. (2009) Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution. Science 325(5948):1682-6 PMID:19779198
- Albuquerque CP, et al. (2008) A multidimensional chromatography technology for in-depth phosphoproteome analysis. Mol Cell Proteomics 7(7):1389-96 PMID:18407956
High-Throughput Literature
Paper(s) associated with one or more pieces of high-throughput evidence in SGD.
No high-throughput literature curated.
Download References (.nbib)
- Fang NN, et al. (2014) Rsp5/Nedd4 is the main ubiquitin ligase that targets cytosolic misfolded proteins following heat stress. Nat Cell Biol 16(12):1227-37 PMID:25344756
- Venters BJ, et al. (2011) A comprehensive genomic binding map of gene and chromatin regulatory proteins in Saccharomyces. Mol Cell 41(4):480-92 PMID:21329885
- Hu Z, et al. (2007) Genetic reconstruction of a functional transcriptional regulatory network. Nat Genet 39(5):683-7 PMID:17417638