Phenotype annotations for a gene are curated single mutant phenotypes that require an observable (e.g., "cell shape"), a qualifier (e.g., "abnormal"), a mutant type (e.g., null), strain background, and a reference. In addition, annotations are classified as classical genetics or high-throughput (e.g., large scale survey, systematic mutation set). Whenever possible, allele information and additional details are provided.
A phenotype is defined as an observable (e.g., apoptosis) and a qualifier (e.g., increased). There may be more than one row with the same phenotype if that phenotype was observed in separate studies or in different conditions, strains, alleles, etc.
35 entries for 17 phenotypesIncrease the total number of rows showing on this page using the pull-down located below the table, or use the page scroll at the table's top right to browse through the table's pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table; click on the small "i" buttons located within a cell for an annotation to view further details.
| Phenotype | Experiment Type | Mutant Information | Strain Background | Chemical | Details | Reference |
|---|---|---|---|---|---|---|
| cell cycle progression in G1 phase: delayed | homozygous diploid, large-scale survey | null Allele: rfx1-Δ | S288C | Details: cells accumulate with 1C DNA content (HTP flow cytometry) indicative of a G1 phase delay | White MA, et al. (2009) PMID:19033152 | |
| cell cycle progression: abnormal | large-scale survey | overexpression | W303 | Details: greater than 5% shift in cells containing a 1C DNA content, indicative of a G1 phase arrest or delay | Stevenson LF, et al. (2001) PMID:11274415 | |
| chronological lifespan: decreased | competitive growth competitive survival of mixed stationary phase co-cultures | null Allele: rfx1-Δ | S288C | Garay E, et al. (2014) PMID:24586198 | ||
| competitive fitness: decreased | competitive growth fitness profiling using complete deletion alleles | null Allele: rfx1-Δ | S288C | Media: minimal medium Details: Relative fitness score: 0.926 | Breslow DK, et al. (2008) PMID:18622397 | |
| competitive fitness: decreased | systematic mutation set | null Allele: rfx1-Δ | S288C | Media: glycerol medium, YPG | Qian W, et al. (2012) PMID:23103169 | |
| competitive fitness: increased | systematic mutation set | null Allele: rfx1-Δ | S288C | Media: rich medium (YPD) w/6% ethanol, ETH | Qian W, et al. (2012) PMID:23103169 | |
| filamentous growth: increased | systematic mutation set | overexpression | Sigma1278b | Jin R, et al. (2008) PMID:17989363 | ||
| innate thermotolerance: decreased | systematic mutation set | null Allele: rfx1-Δ | S288C | Treatment: heat shock, 50 °C Details: acquired thermotolerance is unaffected | Gibney PA, et al. (2013) PMID:24167267 | |
| innate thermotolerance: decreased | homozygous diploid, systematic mutation set | null Allele: rfx1-Δ | S288C | Phase: exponential phase Treatment: heat shock, 50 °C Details: sensitivity scale of -1 (least) to -4 (most) sensitive: -1 | Jarolim S, et al. (2013) PMID:24142923 | |
| mitochondrial genome maintenance: abnormal | classical genetics | null Allele: rfx1-Δ | Other | Lebedeva MA and Shadel GS (2007) PMID:17721079 |
This diagram displays phenotype observables (purple squares) that are shared between the given gene (yellow circle) and other genes (gray circles) based on the number of phenotype observables shared (adjustable using the slider at the bottom).
Click on a gene or phenotype observable name to go to its specific page within SGD; drag any of the gene or observable objects around within the visualization for easier viewing; click “Reset” to automatically redraw the diagram; filter the genes that share observable terms with the given gene by the number of terms they share by clicking anywhere on the slider bar or dragging the tab to the desired filter number.
Addgene Plasmids | DNASU Plasmids | PlasmID | Thermo Scientific | YGRC
dHITS | FitDB | HIPHOP Chemogenomics | HIP HOP Profiles | MetaboGeneCard | PROPHECY | SCMD | ScreenTroll | TheCellVision | Yeast Phenome