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STM1 / YLR150W Literature
All manually curated literature for the specified gene, organized by relevance to the gene and by
association with specific annotations to the gene in SGD. SGD gathers references via a PubMed search for
papers whose titles or abstracts contain “yeast” or “cerevisiae;” these papers are reviewed manually and
linked to relevant genes and literature topics by SGD curators.
- Unique References
- 220
- Aliases
-
MPT4
11
Primary Literature
Literature that either focuses on the gene or contains information about function, biological role,
cellular location, phenotype, regulation, structure, or disease homologs in other species for the gene
or gene product.
No primary literature curated.
Download References (.nbib)
- Bianco E, et al. (2025) Stm1 regulates Ifh1 activity revealing crosstalk between ribosome biogenesis and ribosome dormancy. Mol Cell 85(9):1806-1823.e17 PMID:40315826
- Shetty S, et al. (2023) TORC1 phosphorylates and inhibits the ribosome preservation factor Stm1 to activate dormant ribosomes. EMBO J 42(5):e112344 PMID:36691768
- Subbaiah S P V, et al. (2023) Concentration and time-dependent amyloidogenic characteristics of intrinsically disordered N-terminal region of Saccharomyces cerevisiae Stm1. Front Microbiol 14:1206945 PMID:37928673
- Johnson MS and Desai MM (2022) Mutational robustness changes during long-term adaptation in laboratory budding yeast populations. Elife 11 PMID:35880743
- Fujii S, et al. (2021) Pan2-Pan3 complex, together with Ccr4-Not complex, has a role in the cell growth on non-fermentable carbon sources. Biochem Biophys Res Commun 570:125-130 PMID:34280615
- Schmitt K, et al. (2021) A Multi-Perspective Proximity View on the Dynamic Head Region of the Ribosomal 40S Subunit. Int J Mol Sci 22(21) PMID:34769086
- Wells JN, et al. (2020) Structure and function of yeast Lso2 and human CCDC124 bound to hibernating ribosomes. PLoS Biol 18(7):e3000780 PMID:32687489
- Hayashi H, et al. (2018) Tight interaction of eEF2 in the presence of Stm1 on ribosome. J Biochem 163(3):177-185 PMID:29069440
- Moteshareie H, et al. (2018) Heavy metal sensitivities of gene deletion strains for ITT1 and RPS1A connect their activities to the expression of URE2, a key gene involved in metal detoxification in yeast. PLoS One 13(9):e0198704 PMID:30231023
- Mülleder M, et al. (2016) Functional Metabolomics Describes the Yeast Biosynthetic Regulome. Cell 167(2):553-565.e12 PMID:27693354
- Bilanchone V, et al. (2015) Ty3 Retrotransposon Hijacks Mating Yeast RNA Processing Bodies to Infect New Genomes. PLoS Genet 11(9):e1005528 PMID:26421679
- Ding J, et al. (2015) PEP3 overexpression shortens lag phase but does not alter growth rate in Saccharomyces cerevisiae exposed to acetic acid stress. Appl Microbiol Biotechnol 99(20):8667-80 PMID:26051671
- Salvi JS, et al. (2014) Roles for Pbp1 and caloric restriction in genome and lifespan maintenance via suppression of RNA-DNA hybrids. Dev Cell 30(2):177-91 PMID:25073155
- Serhan G, et al. (2014) The polyene antifungals, amphotericin B and nystatin, cause cell death in Saccharomyces cerevisiae by a distinct mechanism to amphibian-derived antimicrobial peptides. Ann Clin Microbiol Antimicrob 13:18 PMID:24884795
- van den Elzen AM, et al. (2014) Dom34-Hbs1 mediated dissociation of inactive 80S ribosomes promotes restart of translation after stress. EMBO J 33(3):265-76 PMID:24424461
- Emrick D, et al. (2013) The antifungal occidiofungin triggers an apoptotic mechanism of cell death in yeast. J Nat Prod 76(5):829-38 PMID:23672235
- Van Dyke N, et al. (2013) The Saccharomyces cerevisiae protein Stm1p facilitates ribosome preservation during quiescence. Biochem Biophys Res Commun 430(2):745-50 PMID:23206692
- Aulds J, et al. (2012) Global identification of new substrates for the yeast endoribonuclease, RNase mitochondrial RNA processing (MRP). J Biol Chem 287(44):37089-97 PMID:22977255
- Tkach JM, et al. (2012) Dissecting DNA damage response pathways by analysing protein localization and abundance changes during DNA replication stress. Nat Cell Biol 14(9):966-76 PMID:22842922
- Balagopal V and Parker R (2011) Stm1 modulates translation after 80S formation in Saccharomyces cerevisiae. RNA 17(5):835-42 PMID:21460238
- Smith JS, et al. (2011) Rudimentary G-quadruplex-based telomere capping in Saccharomyces cerevisiae. Nat Struct Mol Biol 18(4):478-85 PMID:21399640
- Balagopal V and Parker R (2009) Stm1 modulates mRNA decay and Dhh1 function in Saccharomyces cerevisiae. Genetics 181(1):93-103 PMID:19015546
- Van Dyke N, et al. (2009) Stm1p alters the ribosome association of eukaryotic elongation factor 3 and affects translation elongation. Nucleic Acids Res 37(18):6116-25 PMID:19666721
- Katayama T and Torigoe H (2008) The interaction between the purine motif triplex and the triplex DNA-binding domain of Saccharomyces cerevisiae Stm1 protein. Nucleic Acids Symp Ser (Oxf) 111-2 PMID:18776278
- Hsieh CH, et al. (2007) Expression of proteins with dimethylarginines in Escherichia coli for protein-protein interaction studies. Protein Sci 16(5):919-28 PMID:17456744
- Katayama T, et al. (2007) Location of the triplex DNA-binding domain of Saccharomyces cerevisiae Stm1 protein. Nucleic Acids Symp Ser (Oxf) 123-4 PMID:18029617
- Morton CO, et al. (2007) An amphibian-derived, cationic, alpha-helical antimicrobial peptide kills yeast by caspase-independent but AIF-dependent programmed cell death. Mol Microbiol 65(2):494-507 PMID:17587229
- Van Dyke N, et al. (2006) Stm1p, a ribosome-associated protein, is important for protein synthesis in Saccharomyces cerevisiae under nutritional stress conditions. J Mol Biol 358(4):1023-31 PMID:16580682
- Correia H, et al. (2004) Similarity between the association factor of ribosomal subunits and the protein Stm1p from Saccharomyces cerevisiae. Mem Inst Oswaldo Cruz 99(7):733-7 PMID:15654430
- Van Dyke MW, et al. (2004) Stm1p, a G4 quadruplex and purine motif triplex nucleic acid-binding protein, interacts with ribosomes and subtelomeric Y' DNA in Saccharomyces cerevisiae. J Biol Chem 279(23):24323-33 PMID:15044472
- Hayashi N and Murakami S (2002) STM1, a gene which encodes a guanine quadruplex binding protein, interacts with CDC13 in Saccharomyces cerevisiae. Mol Genet Genomics 267(6):806-13 PMID:12207228
- Inada T, et al. (2002) One-step affinity purification of the yeast ribosome and its associated proteins and mRNAs. RNA 8(7):948-58 PMID:12166649
- Kumar A, et al. (2002) Subcellular localization of the yeast proteome. Genes Dev 16(6):707-19 PMID:11914276
- von der Haar T and McCarthy JE (2002) Intracellular translation initiation factor levels in Saccharomyces cerevisiae and their role in cap-complex function. Mol Microbiol 46(2):531-44 PMID:12406227
- Ligr M, et al. (2001) The proteasomal substrate Stm1 participates in apoptosis-like cell death in yeast. Mol Biol Cell 12(8):2422-32 PMID:11514626
- Nelson LD, et al. (2000) The yeast STM1 gene encodes a purine motif triple helical DNA-binding protein. J Biol Chem 275(8):5573-81 PMID:10681538
- Hata H, et al. (1998) Dhh1p, a putative RNA helicase, associates with the general transcription factors Pop2p and Ccr4p from Saccharomyces cerevisiae. Genetics 148(2):571-9 PMID:9504907
- Frantz JD and Gilbert W (1995) A yeast gene product, G4p2, with a specific affinity for quadruplex nucleic acids. J Biol Chem 270(16):9413-9 PMID:7721866
- Utsugi T, et al. (1995) A high dose of the STM1 gene suppresses the temperature sensitivity of the tom1 and htr1 mutants in Saccharomyces cerevisiae. Biochim Biophys Acta 1263(3):285-8 PMID:7548221
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Additional Literature
Papers that show experimental evidence for the gene or describe homologs in other species, but
for which the gene is not the paper’s principal focus.
No additional literature curated.
Download References (.nbib)
- Schärfen L, et al. (2025) Rapid folding of nascent RNA regulates eukaryotic RNA biogenesis. Mol Cell 85(8):1561-1574.e5 PMID:40139190
- Takallou S, et al. (2024) Oxidative stress-induced YAP1 expression is regulated by NCE102, CDA2, and BCS1. FEBS J 291(20):4602-4618 PMID:39102301
- Bleckmann A, et al. (2023) Cytosolic RGG RNA-binding proteins are temperature sensitive flowering time regulators in Arabidopsis. Biol Chem 404(11-12):1069-1084 PMID:37674329
- Egorov AA, et al. (2021) Ribo-Seq and RNA-Seq of TMA46 ( DFRP1) and GIR2 ( DFRP2) knockout yeast strains. F1000Res 10:1162 PMID:34900236
- Lanz MC, et al. (2021) In-depth and 3-dimensional exploration of the budding yeast phosphoproteome. EMBO Rep 22(2):e51121 PMID:33491328
- Seike T, et al. (2021) Random Transfer of Ogataea polymorpha Genes into Saccharomyces cerevisiae Reveals a Complex Background of Heat Tolerance. J Fungi (Basel) 7(4) PMID:33921057
- Sun Y, et al. (2021) A quantitative yeast aging proteomics analysis reveals novel aging regulators. Geroscience 43(5):2573-2593 PMID:34241809
- Bharati AP, et al. (2020) Proteome analysis of Saccharomyces cerevisiae after methyl methane sulfonate (MMS) treatment. Biochem Biophys Rep 24:100820 PMID:33072891
- Bresson S, et al. (2020) Stress-Induced Translation Inhibition through Rapid Displacement of Scanning Initiation Factors. Mol Cell 80(3):470-484.e8 PMID:33053322
- Geltinger F, et al. (2020) The transfer of specific mitochondrial lipids and proteins to lipid droplets contributes to proteostasis upon stress and aging in the eukaryotic model system Saccharomyces cerevisiae. Geroscience 42(1):19-38 PMID:31676965
- Brodiazhenko T, et al. (2018) Elimination of Ribosome Inactivating Factors Improves the Efficiency of Bacillus subtilis and Saccharomyces cerevisiae Cell-Free Translation Systems. Front Microbiol 9:3041 PMID:30619132
- Chai N and Gitler AD (2018) Yeast screen for modifiers of C9orf72 poly(glycine-arginine) dipeptide repeat toxicity. FEMS Yeast Res 18(4) PMID:29528392
- Baek SH, et al. (2016) GSF2 deletion increases lactic acid production by alleviating glucose repression in Saccharomyces cerevisiae. Sci Rep 6:34812 PMID:27708428
- Jovičić A, et al. (2015) Modifiers of C9orf72 dipeptide repeat toxicity connect nucleocytoplasmic transport defects to FTD/ALS. Nat Neurosci 18(9):1226-9 PMID:26308983
- Bautista-Santos A and Zinker S (2014) The P1/P2 protein heterodimers assemble to the ribosomal stalk at the moment when the ribosome is committed to translation but not to the native 60S ribosomal subunit in Saccharomyces cerevisiae. Biochemistry 53(25):4105-12 PMID:24922111
- Geisberg JV, et al. (2014) Global analysis of mRNA isoform half-lives reveals stabilizing and destabilizing elements in yeast. Cell 156(4):812-24 PMID:24529382
- Freeberg MA, et al. (2013) Pervasive and dynamic protein binding sites of the mRNA transcriptome in Saccharomyces cerevisiae. Genome Biol 14(2):R13 PMID:23409723
- Ohtsuka H, et al. (2013) Screening for long-lived genes identifies Oga1, a guanine-quadruplex associated protein that affects the chronological lifespan of the fission yeast Schizosaccharomyces pombe. Mol Genet Genomics 288(5-6):285-95 PMID:23640107
- Fraser HB, et al. (2012) Polygenic cis-regulatory adaptation in the evolution of yeast pathogenicity. Genome Res 22(10):1930-9 PMID:22645260
- Kazemzadeh L, et al. (2012) Boolean model of yeast apoptosis as a tool to study yeast and human apoptotic regulations. Front Physiol 3:446 PMID:23233838
- Ben-Shem A, et al. (2011) The structure of the eukaryotic ribosome at 3.0 Å resolution. Science 334(6062):1524-9 PMID:22096102
- Jung PP, et al. (2011) Ploidy influences cellular responses to gross chromosomal rearrangements in Saccharomyces cerevisiae. BMC Genomics 12:331 PMID:21711526
- Kim DR, et al. (2011) Differential chromatin proteomics of the MMS-induced DNA damage response in yeast. Proteome Sci 9:62 PMID:21967861
- Teng X, et al. (2011) Gene-dependent cell death in yeast. Cell Death Dis 2(8):e188 PMID:21814286
- Türkel S, et al. (2011) Glucose signalling pathway controls the programmed ribosomal frameshift efficiency in retroviral-like element Ty3 in Saccharomyces cerevisiae. Yeast 28(11):799-808 PMID:21989811
- Armache JP, et al. (2010) Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution. Proc Natl Acad Sci U S A 107(46):19748-53 PMID:20980660
- Carmody SR, et al. (2010) The mitogen-activated protein kinase Slt2 regulates nuclear retention of non-heat shock mRNAs during heat shock-induced stress. Mol Cell Biol 30(21):5168-79 PMID:20823268
- Cuenca-Bono B, et al. (2010) A novel link between Sus1 and the cytoplasmic mRNA decay machinery suggests a broad role in mRNA metabolism. BMC Cell Biol 11:19 PMID:20230609
- Tsuboi T and Inada T (2010) Tethering of poly(A)-binding protein interferes with non-translated mRNA decay from the 5' end in yeast. J Biol Chem 285(44):33589-601 PMID:20732870
- Zhang ML, et al. (2010) Yeast telomerase subunit Est1p has guanine quadruplex-promoting activity that is required for telomere elongation. Nat Struct Mol Biol 17(2):202-9 PMID:20098422
- Lin FM, et al. (2009) Temporal quantitative proteomics of Saccharomyces cerevisiae in response to a nonlethal concentration of furfural. Proteomics 9(24):5471-83 PMID:19834894
- Lin FM, et al. (2009) Comparative proteomic analysis of tolerance and adaptation of ethanologenic Saccharomyces cerevisiae to furfural, a lignocellulosic inhibitory compound. Appl Environ Microbiol 75(11):3765-76 PMID:19363068
- Li Z, et al. (2008) Cdc34p ubiquitin-conjugating enzyme is a component of the tombusvirus replicase complex and ubiquitinates p33 replication protein. J Virol 82(14):6911-26 PMID:18463149
- Morín M, et al. (2007) Proteomic analysis reveals metabolic changes during yeast to hypha transition in Yarrowia lipolytica. J Mass Spectrom 42(11):1453-62 PMID:17960580
- Oeffinger M, et al. (2007) Comprehensive analysis of diverse ribonucleoprotein complexes. Nat Methods 4(11):951-6 PMID:17922018
- Ohn T, et al. (2007) CAF1 plays an important role in mRNA deadenylation separate from its contact to CCR4. Nucleic Acids Res 35(9):3002-15 PMID:17439972
- de Groot MJL, et al. (2007) Quantitative proteomics and transcriptomics of anaerobic and aerobic yeast cultures reveals post-transcriptional regulation of key cellular processes. Microbiology (Reading) 153(Pt 11):3864-3878 PMID:17975095
- Daniel J (2005) Sir-dependent downregulation of various aging processes. Mol Genet Genomics 274(5):539-47 PMID:16200413
- Gardocki ME, et al. (2005) Genomic analysis of PIS1 gene expression. Eukaryot Cell 4(3):604-14 PMID:15755922
- Tong AH, et al. (2004) Global mapping of the yeast genetic interaction network. Science 303(5659):808-13 PMID:14764870
- Zhou W, et al. (2004) Global analyses of sumoylated proteins in Saccharomyces cerevisiae. Induction of protein sumoylation by cellular stresses. J Biol Chem 279(31):32262-8 PMID:15166219
- Linder P, et al. (1999) A systematic nomenclature for new translation initiation factor genes from S. pombe and other fungi. Yeast 15(10A):865-72 PMID:10407266
- Kellems RE and Butow RA (1974) Cytoplasmic type 80 S ribosomes associated with yeast mitochondria. 3. Changes in the amount of bound ribosomes in response to changes in metabolic state. J Biol Chem 249(10):3304-10 PMID:4208475
Reviews
No reviews curated.
Gene Ontology Literature
Paper(s) associated with one or more GO (Gene Ontology) terms in SGD for the specified gene.
No gene ontology literature curated.
Download References (.nbib)
- Van Dyke N, et al. (2009) Stm1p alters the ribosome association of eukaryotic elongation factor 3 and affects translation elongation. Nucleic Acids Res 37(18):6116-25 PMID:19666721
- Katayama T, et al. (2007) Location of the triplex DNA-binding domain of Saccharomyces cerevisiae Stm1 protein. Nucleic Acids Symp Ser (Oxf) 123-4 PMID:18029617
- Van Dyke N, et al. (2006) Stm1p, a ribosome-associated protein, is important for protein synthesis in Saccharomyces cerevisiae under nutritional stress conditions. J Mol Biol 358(4):1023-31 PMID:16580682
- Correia H, et al. (2004) Similarity between the association factor of ribosomal subunits and the protein Stm1p from Saccharomyces cerevisiae. Mem Inst Oswaldo Cruz 99(7):733-7 PMID:15654430
- Van Dyke MW, et al. (2004) Stm1p, a G4 quadruplex and purine motif triplex nucleic acid-binding protein, interacts with ribosomes and subtelomeric Y' DNA in Saccharomyces cerevisiae. J Biol Chem 279(23):24323-33 PMID:15044472
- Hayashi N and Murakami S (2002) STM1, a gene which encodes a guanine quadruplex binding protein, interacts with CDC13 in Saccharomyces cerevisiae. Mol Genet Genomics 267(6):806-13 PMID:12207228
- Kumar A, et al. (2002) Subcellular localization of the yeast proteome. Genes Dev 16(6):707-19 PMID:11914276
- Ligr M, et al. (2001) The proteasomal substrate Stm1 participates in apoptosis-like cell death in yeast. Mol Biol Cell 12(8):2422-32 PMID:11514626
Phenotype Literature
Paper(s) associated with one or more pieces of classical phenotype evidence in SGD for the specified gene.
No phenotype literature curated.
Download References (.nbib)
- Van Dyke N, et al. (2013) The Saccharomyces cerevisiae protein Stm1p facilitates ribosome preservation during quiescence. Biochem Biophys Res Commun 430(2):745-50 PMID:23206692
- Van Dyke N, et al. (2009) Stm1p alters the ribosome association of eukaryotic elongation factor 3 and affects translation elongation. Nucleic Acids Res 37(18):6116-25 PMID:19666721
- Morton CO, et al. (2007) An amphibian-derived, cationic, alpha-helical antimicrobial peptide kills yeast by caspase-independent but AIF-dependent programmed cell death. Mol Microbiol 65(2):494-507 PMID:17587229
- Van Dyke N, et al. (2006) Stm1p, a ribosome-associated protein, is important for protein synthesis in Saccharomyces cerevisiae under nutritional stress conditions. J Mol Biol 358(4):1023-31 PMID:16580682
Interaction Literature
Paper(s) associated with evidence supporting a physical or genetic interaction between the
specified gene and another gene in SGD. Currently, all interaction evidence is obtained from
BioGRID.
No interaction literature curated.
Download References (.nbib)
- Andrade Latino A and Biggins S (2025) Analysis of a cancer-associated mutation in the budding yeast Nuf2 kinetochore protein. MicroPubl Biol 2025 PMID:40161439
- Chen X, et al. (2025) An Intrinsically Disordered RNA Binding Protein Modulates mRNA Translation and Storage. J Mol Biol 437(2):168884 PMID:39617253
- Cruz VE, et al. (2024) The DEAD-box ATPase Dbp10/DDX54 initiates peptidyl transferase center formation during 60S ribosome biogenesis. Nat Commun 15(1):3296 PMID:38632236
- Filali-Mouncef Y, et al. (2024) An APEX2-based proximity-dependent biotinylation assay with temporal specificity to study protein interactions during autophagy in the yeast Saccharomyces cerevisiae. Autophagy 20(10):2323-2337 PMID:38958087
- Jiang L, et al. (2024) Identification of the Beta Subunit Fas1p of Fatty Acid Synthetase as an Interacting Partner of Yeast Calcium/Calmodulin-Dependent Protein Kinase Cmk2p Through Mass Spectrometry Analysis. Appl Biochem Biotechnol 196(10):6836-6848 PMID:38411936
- Kelbert M, et al. (2024) The zinc-finger transcription factor Sfp1 imprints specific classes of mRNAs and links their synthesis to cytoplasmic decay. Elife 12 PMID:39356734
- Kociemba J, et al. (2024) Multi-signal regulation of the GSK-3β homolog Rim11 controls meiosis entry in budding yeast. EMBO J 43(15):3256-3286 PMID:38886580
- Kofler L, et al. (2024) The novel ribosome biogenesis inhibitor usnic acid blocks nucleolar pre-60S maturation. Nat Commun 15(1):7511 PMID:39209816
- Marmorale LJ, et al. (2024) Fast-evolving cofactors regulate the role of HEATR5 complexes in intra-Golgi trafficking. J Cell Biol 223(3) PMID:38240799
- Mitterer V, et al. (2024) The RNA helicase Dbp10 coordinates assembly factor association with PTC maturation during ribosome biogenesis. Nucleic Acids Res 52(4):1975-1987 PMID:38113283
- O'Brien MJ and Ansari A (2024) Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle. Biochim Biophys Acta Proteins Proteom 1872(1):140968 PMID:37863410
- Sekiguchi T, et al. (2024) Interaction between Gtr2p and ribosomal Rps31p affects the incorporation of Rps31p into ribosomes of Saccharomyces cerevisiae. Biochem Biophys Res Commun 699:149499 PMID:38281328
- Takallou S, et al. (2024) Oxidative stress-induced YAP1 expression is regulated by NCE102, CDA2, and BCS1. FEBS J 291(20):4602-4618 PMID:39102301
- Ali A, et al. (2023) Adaptive preservation of orphan ribosomal proteins in chaperone-dispersed condensates. Nat Cell Biol 25(11):1691-1703 PMID:37845327
- Cohen N, et al. (2023) A systematic proximity ligation approach to studying protein-substrate specificity identifies the substrate spectrum of the Ssh1 translocon. EMBO J 42(11):e113385 PMID:37073826
- Michaelis AC, et al. (2023) The social and structural architecture of the yeast protein interactome. Nature 624(7990):192-200 PMID:37968396
- Smurova K, et al. (2023) Rio1 downregulates centromeric RNA levels to promote the timely assembly of structurally fit kinetochores. Nat Commun 14(1):3172 PMID:37263996
- Khan MM, et al. (2022) Oxidative stress protein Oxr1 promotes V-ATPase holoenzyme disassembly in catalytic activity-independent manner. EMBO J 41(3):e109360 PMID:34918374
- Feder ZA, et al. (2021) Subcellular localization of the J-protein Sis1 regulates the heat shock response. J Cell Biol 220(1) PMID:33326013
- Fujii S, et al. (2021) Pan2-Pan3 complex, together with Ccr4-Not complex, has a role in the cell growth on non-fermentable carbon sources. Biochem Biophys Res Commun 570:125-130 PMID:34280615
- Kratzat H, et al. (2021) A structural inventory of native ribosomal ABCE1-43S pre-initiation complexes. EMBO J 40(1):e105179 PMID:33289941
- Nwokoye EC, et al. (2021) Overlapping regions of Caf20 mediate its interactions with the mRNA-5'cap-binding protein eIF4E and with ribosomes. Sci Rep 11(1):13467 PMID:34188131
- Perica T, et al. (2021) Systems-level effects of allosteric perturbations to a model molecular switch. Nature 599(7883):152-157 PMID:34646016
- Schmitt K, et al. (2021) A Multi-Perspective Proximity View on the Dynamic Head Region of the Ribosomal 40S Subunit. Int J Mol Sci 22(21) PMID:34769086
- Su XB, et al. (2021) SUMOylation stabilizes sister kinetochore biorientation to allow timely anaphase. J Cell Biol 220(7) PMID:33929514
- Buck TM, et al. (2020) The Capture of a Disabled Proteasome Identifies Erg25 as a Substrate for Endoplasmic Reticulum Associated Degradation. Mol Cell Proteomics 19(11):1896-1909 PMID:32868373
- Eyboulet F, et al. (2020) The deubiquitylase Ubp15 couples transcription to mRNA export. Elife 9 PMID:33226341
- Schoppe J, et al. (2020) AP-3 vesicle uncoating occurs after HOPS-dependent vacuole tethering. EMBO J 39(20):e105117 PMID:32840906
- Bryant EE, et al. (2019) Rad5 dysregulation drives hyperactive recombination at replication forks resulting in cisplatin sensitivity and genome instability. Nucleic Acids Res 47(17):9144-9159 PMID:31350889
- Rössler I, et al. (2019) Tsr4 and Nap1, two novel members of the ribosomal protein chaperOME. Nucleic Acids Res 47(13):6984-7002 PMID:31062022
- Schmitt K and Valerius O (2019) yRACK1/Asc1 proxiOMICs-Towards Illuminating Ships Passing in the Night. Cells 8(11) PMID:31689955
- Hayashi H, et al. (2018) Tight interaction of eEF2 in the presence of Stm1 on ribosome. J Biochem 163(3):177-185 PMID:29069440
- Oliete-Calvo P, et al. (2018) A role for Mog1 in H2Bub1 and H3K4me3 regulation affecting RNAPII transcription and mRNA export. EMBO Rep 19(11) PMID:30249596
- Cho T, et al. (2017) Coupling of a voltage-gated Ca2+ channel homologue with a plasma membrane H+ -ATPase in yeast. Genes Cells 22(1):94-104 PMID:27935186
- Gonzales-Zubiate FA, et al. (2017) Identification of karyopherins involved in the nuclear import of RNA exosome subunit Rrp6 in Saccharomyces cerevisiae. J Biol Chem 292(29):12267-12284 PMID:28539363
- Jungfleisch J, et al. (2017) A novel translational control mechanism involving RNA structures within coding sequences. Genome Res 27(1):95-106 PMID:27821408
- Liang J, et al. (2017) Recruitment of a SUMO isopeptidase to rDNA stabilizes silencing complexes by opposing SUMO targeted ubiquitin ligase activity. Genes Dev 31(8):802-815 PMID:28487408
- Opitz N, et al. (2017) Capturing the Asc1p/Receptor for Activated C Kinase 1 (RACK1) Microenvironment at the Head Region of the 40S Ribosome with Quantitative BioID in Yeast. Mol Cell Proteomics 16(12):2199-2218 PMID:28982715
- Samanfar B, et al. (2017) The sensitivity of the yeast, Saccharomyces cerevisiae, to acetic acid is influenced by DOM34 and RPL36A. PeerJ 5:e4037 PMID:29158977
- Sturm M, et al. (2017) Interdependent action of KH domain proteins Krr1 and Dim2 drive the 40S platform assembly. Nat Commun 8(1):2213 PMID:29263326
- Wilms T, et al. (2017) The yeast protein kinase Sch9 adjusts V-ATPase assembly/disassembly to control pH homeostasis and longevity in response to glucose availability. PLoS Genet 13(6):e1006835 PMID:28604780
- Abraham KJ, et al. (2016) Intersection of calorie restriction and magnesium in the suppression of genome-destabilizing RNA-DNA hybrids. Nucleic Acids Res 44(18):8870-8884 PMID:27574117
- Aviram N, et al. (2016) The SND proteins constitute an alternative targeting route to the endoplasmic reticulum. Nature 540(7631):134-138 PMID:27905431
- Buser R, et al. (2016) The Replisome-Coupled E3 Ubiquitin Ligase Rtt101Mms22 Counteracts Mrc1 Function to Tolerate Genotoxic Stress. PLoS Genet 12(2):e1005843 PMID:26849847
- Costanzo M, et al. (2016) A global genetic interaction network maps a wiring diagram of cellular function. Science 353(6306) PMID:27708008
- Delaveau T, et al. (2016) Tma108, a putative M1 aminopeptidase, is a specific nascent chain-associated protein in Saccharomyces cerevisiae. Nucleic Acids Res 44(18):8826-8841 PMID:27580715
- Hübscher V, et al. (2016) The Hsp70 homolog Ssb and the 14-3-3 protein Bmh1 jointly regulate transcription of glucose repressed genes in Saccharomyces cerevisiae. Nucleic Acids Res 44(12):5629-45 PMID:27001512
- Lakshminarasimhan M, et al. (2016) Proteomic and Genomic Analyses of the Rvb1 and Rvb2 Interaction Network upon Deletion of R2TP Complex Components. Mol Cell Proteomics 15(3):960-74 PMID:26831523
- Mast FD, et al. (2016) Peroxins Pex30 and Pex29 Dynamically Associate with Reticulons to Regulate Peroxisome Biogenesis from the Endoplasmic Reticulum. J Biol Chem 291(30):15408-27 PMID:27129769
- Sung MK, et al. (2016) A conserved quality-control pathway that mediates degradation of unassembled ribosomal proteins. Elife 5 PMID:27552055
- Woodford MR, et al. (2016) Mps1 Mediated Phosphorylation of Hsp90 Confers Renal Cell Carcinoma Sensitivity and Selectivity to Hsp90 Inhibitors. Cell Rep 14(4):872-884 PMID:26804907
- Cary GA, et al. (2015) Proteomic Analysis of Dhh1 Complexes Reveals a Role for Hsp40 Chaperone Ydj1 in Yeast P-Body Assembly. G3 (Bethesda) 5(11):2497-511 PMID:26392412
- Castelli LM, et al. (2015) The 4E-BP Caf20p Mediates Both eIF4E-Dependent and Independent Repression of Translation. PLoS Genet 11(5):e1005233 PMID:25973932
- Kırlı K, et al. (2015) A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Elife 4 PMID:26673895
- Lapointe CP, et al. (2015) Protein-RNA networks revealed through covalent RNA marks. Nat Methods 12(12):1163-70 PMID:26524240
- Morvan J, et al. (2015) Btn3 regulates the endosomal sorting function of the yeast Ent3 epsin, an adaptor for SNARE proteins. J Cell Sci 128(4):706-16 PMID:25512335
- Sanchez-Casalongue ME, et al. (2015) Differential phosphorylation of a regulatory subunit of protein kinase CK2 by target of rapamycin complex 1 signaling and the Cdc-like kinase Kns1. J Biol Chem 290(11):7221-33 PMID:25631054
- Truman AW, et al. (2015) Quantitative proteomics of the yeast Hsp70/Hsp90 interactomes during DNA damage reveal chaperone-dependent regulation of ribonucleotide reductase. J Proteomics 112:285-300 PMID:25452130
- Truman AW, et al. (2015) The quantitative changes in the yeast Hsp70 and Hsp90 interactomes upon DNA damage. Data Brief 2:12-5 PMID:26217697
- Atencio D, et al. (2014) The yeast Ess1 prolyl isomerase controls Swi6 and Whi5 nuclear localization. G3 (Bethesda) 4(3):523-37 PMID:24470217
- Salvi JS, et al. (2014) Roles for Pbp1 and caloric restriction in genome and lifespan maintenance via suppression of RNA-DNA hybrids. Dev Cell 30(2):177-91 PMID:25073155
- Subbotin RI and Chait BT (2014) A pipeline for determining protein-protein interactions and proximities in the cellular milieu. Mol Cell Proteomics 13(11):2824-35 PMID:25172955
- van den Elzen AM, et al. (2014) Dom34-Hbs1 mediated dissociation of inactive 80S ribosomes promotes restart of translation after stress. EMBO J 33(3):265-76 PMID:24424461
- Yahya G, et al. (2014) A Whi7-anchored loop controls the G1 Cdk-cyclin complex at start. Mol Cell 53(1):115-26 PMID:24374311
- Aristizabal MJ, et al. (2013) High-throughput genetic and gene expression analysis of the RNAPII-CTD reveals unexpected connections to SRB10/CDK8. PLoS Genet 9(8):e1003758 PMID:24009531
- Babiano R, et al. (2013) Yeast ribosomal protein L7 and its homologue Rlp7 are simultaneously present at distinct sites on pre-60S ribosomal particles. Nucleic Acids Res 41(20):9461-70 PMID:23945946
- Freeberg MA, et al. (2013) Pervasive and dynamic protein binding sites of the mRNA transcriptome in Saccharomyces cerevisiae. Genome Biol 14(2):R13 PMID:23409723
- Mitchell L, et al. (2013) mChIP-KAT-MS, a method to map protein interactions and acetylation sites for lysine acetyltransferases. Proc Natl Acad Sci U S A 110(17):E1641-50 PMID:23572591
- Mitchell SF, et al. (2013) Global analysis of yeast mRNPs. Nat Struct Mol Biol 20(1):127-33 PMID:23222640
- Qiu J, et al. (2013) Coupling of mitochondrial import and export translocases by receptor-mediated supercomplex formation. Cell 154(3):596-608 PMID:23911324
- Snider J, et al. (2013) Mapping the functional yeast ABC transporter interactome. Nat Chem Biol 9(9):565-72 PMID:23831759
- Sung MK, et al. (2013) Genome-wide bimolecular fluorescence complementation analysis of SUMO interactome in yeast. Genome Res 23(4):736-46 PMID:23403034
- Willmund F, et al. (2013) The cotranslational function of ribosome-associated Hsp70 in eukaryotic protein homeostasis. Cell 152(1-2):196-209 PMID:23332755
- Aulds J, et al. (2012) Global identification of new substrates for the yeast endoribonuclease, RNase mitochondrial RNA processing (MRP). J Biol Chem 287(44):37089-97 PMID:22977255
- Babu M, et al. (2012) Interaction landscape of membrane-protein complexes in Saccharomyces cerevisiae. Nature 489(7417):585-9 PMID:22940862
- Moehle EA, et al. (2012) The yeast SR-like protein Npl3 links chromatin modification to mRNA processing. PLoS Genet 8(11):e1003101 PMID:23209445
- Richardson LA, et al. (2012) A conserved deubiquitinating enzyme controls cell growth by regulating RNA polymerase I stability. Cell Rep 2(2):372-85 PMID:22902402
- Sharifpoor S, et al. (2012) Functional wiring of the yeast kinome revealed by global analysis of genetic network motifs. Genome Res 22(4):791-801 PMID:22282571
- Balagopal V and Parker R (2011) Stm1 modulates translation after 80S formation in Saccharomyces cerevisiae. RNA 17(5):835-42 PMID:21460238
- Chan JN, et al. (2011) Perinuclear cohibin complexes maintain replicative life span via roles at distinct silent chromatin domains. Dev Cell 20(6):867-79 PMID:21664583
- Echtenkamp FJ, et al. (2011) Global functional map of the p23 molecular chaperone reveals an extensive cellular network. Mol Cell 43(2):229-41 PMID:21777812
- Sahasranaman A, et al. (2011) Assembly of Saccharomyces cerevisiae 60S ribosomal subunits: role of factors required for 27S pre-rRNA processing. EMBO J 30(19):4020-32 PMID:21926967
- Sammons MA, et al. (2011) Saccharomyces cerevisiae Gis2 interacts with the translation machinery and is orthogonal to myotonic dystrophy type 2 protein ZNF9. Biochem Biophys Res Commun 406(1):13-9 PMID:21277287
- Smith JS, et al. (2011) Rudimentary G-quadruplex-based telomere capping in Saccharomyces cerevisiae. Nat Struct Mol Biol 18(4):478-85 PMID:21399640
- Tian R, et al. (2011) Development of a multiplexed microfluidic proteomic reactor and its application for studying protein-protein interactions. Anal Chem 83(11):4095-102 PMID:21520965
- Akiyoshi B, et al. (2010) Tension directly stabilizes reconstituted kinetochore-microtubule attachments. Nature 468(7323):576-9 PMID:21107429
- Carmody SR, et al. (2010) The mitogen-activated protein kinase Slt2 regulates nuclear retention of non-heat shock mRNAs during heat shock-induced stress. Mol Cell Biol 30(21):5168-79 PMID:20823268
- Costanzo M, et al. (2010) The genetic landscape of a cell. Science 327(5964):425-31 PMID:20093466
- Cuenca-Bono B, et al. (2010) A novel link between Sus1 and the cytoplasmic mRNA decay machinery suggests a broad role in mRNA metabolism. BMC Cell Biol 11:19 PMID:20230609
- Kaake RM, et al. (2010) Characterization of cell cycle specific protein interaction networks of the yeast 26S proteasome complex by the QTAX strategy. J Proteome Res 9(4):2016-29 PMID:20170199
- Ossareh-Nazari B, et al. (2010) Cdc48 and Ufd3, new partners of the ubiquitin protease Ubp3, are required for ribophagy. EMBO Rep 11(7):548-54 PMID:20508643
- Akiyoshi B, et al. (2009) Quantitative proteomic analysis of purified yeast kinetochores identifies a PP1 regulatory subunit. Genes Dev 23(24):2887-99 PMID:19948764
- Balagopal V and Parker R (2009) Stm1 modulates mRNA decay and Dhh1 function in Saccharomyces cerevisiae. Genetics 181(1):93-103 PMID:19015546
- Batisse J, et al. (2009) Purification of nuclear poly(A)-binding protein Nab2 reveals association with the yeast transcriptome and a messenger ribonucleoprotein core structure. J Biol Chem 284(50):34911-7 PMID:19840948
- Chang M, et al. (2009) Telomerase is essential to alleviate pif1-induced replication stress at telomeres. Genetics 183(3):779-91 PMID:19704012
- Hannum G, et al. (2009) Genome-wide association data reveal a global map of genetic interactions among protein complexes. PLoS Genet 5(12):e1000782 PMID:20041197
- Van Dyke N, et al. (2009) Stm1p alters the ribosome association of eukaryotic elongation factor 3 and affects translation elongation. Nucleic Acids Res 37(18):6116-25 PMID:19666721
- Addinall SG, et al. (2008) A genomewide suppressor and enhancer analysis of cdc13-1 reveals varied cellular processes influencing telomere capping in Saccharomyces cerevisiae. Genetics 180(4):2251-66 PMID:18845848
- Guerrero C, et al. (2008) Characterization of the proteasome interaction network using a QTAX-based tag-team strategy and protein interaction network analysis. Proc Natl Acad Sci U S A 105(36):13333-8 PMID:18757749
- Lin YY, et al. (2008) A comprehensive synthetic genetic interaction network governing yeast histone acetylation and deacetylation. Genes Dev 22(15):2062-74 PMID:18676811
- Oeffinger M, et al. (2007) Comprehensive analysis of diverse ribonucleoprotein complexes. Nat Methods 4(11):951-6 PMID:17922018
- Ohn T, et al. (2007) CAF1 plays an important role in mRNA deadenylation separate from its contact to CCR4. Nucleic Acids Res 35(9):3002-15 PMID:17439972
- Gavin AC, et al. (2006) Proteome survey reveals modularity of the yeast cell machinery. Nature 440(7084):631-6 PMID:16429126
- Hesselberth JR, et al. (2006) Comparative analysis of Saccharomyces cerevisiae WW domains and their interacting proteins. Genome Biol 7(4):R30 PMID:16606443
- Krogan NJ, et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 440(7084):637-43 PMID:16554755
- Estruch F, et al. (2005) Physical and genetic interactions link the yeast protein Zds1p with mRNA nuclear export. J Biol Chem 280(10):9691-7 PMID:15619606
- Hannich JT, et al. (2005) Defining the SUMO-modified proteome by multiple approaches in Saccharomyces cerevisiae. J Biol Chem 280(6):4102-10 PMID:15590687
- Ptacek J, et al. (2005) Global analysis of protein phosphorylation in yeast. Nature 438(7068):679-84 PMID:16319894
- Tong AH, et al. (2004) Global mapping of the yeast genetic interaction network. Science 303(5659):808-13 PMID:14764870
- Van Dyke MW, et al. (2004) Stm1p, a G4 quadruplex and purine motif triplex nucleic acid-binding protein, interacts with ribosomes and subtelomeric Y' DNA in Saccharomyces cerevisiae. J Biol Chem 279(23):24323-33 PMID:15044472
- Gavin AC, et al. (2002) Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415(6868):141-7 PMID:11805826
- Hayashi N and Murakami S (2002) STM1, a gene which encodes a guanine quadruplex binding protein, interacts with CDC13 in Saccharomyces cerevisiae. Mol Genet Genomics 267(6):806-13 PMID:12207228
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Regulation Literature
Paper(s) associated with one or more pieces of regulation evidence in SGD, as found on the
Regulation page.
No regulation literature curated.
Post-translational Modifications Literature
Paper(s) associated with one or more pieces of post-translational modifications evidence in SGD.
No post-translational modifications literature curated.
Download References (.nbib)
- Blaszczak E, et al. (2024) Dissecting Ubiquitylation and DNA Damage Response Pathways in the Yeast Saccharomyces cerevisiae Using a Proteome-Wide Approach. Mol Cell Proteomics 23(1):100695 PMID:38101750
- King GA, et al. (2023) Meiotic nuclear pore complex remodeling provides key insights into nuclear basket organization. J Cell Biol 222(2) PMID:36515990
- Leutert M, et al. (2023) The regulatory landscape of the yeast phosphoproteome. Nat Struct Mol Biol 30(11):1761-1773 PMID:37845410
- Shetty S, et al. (2023) TORC1 phosphorylates and inhibits the ribosome preservation factor Stm1 to activate dormant ribosomes. EMBO J 42(5):e112344 PMID:36691768
- Bhagwat NR, et al. (2021) SUMO is a pervasive regulator of meiosis. Elife 10 PMID:33502312
- Lanz MC, et al. (2021) In-depth and 3-dimensional exploration of the budding yeast phosphoproteome. EMBO Rep 22(2):e51121 PMID:33491328
- Zhou X, et al. (2021) Cross-compartment signal propagation in the mitotic exit network. Elife 10 PMID:33481703
- MacGilvray ME, et al. (2020) Phosphoproteome Response to Dithiothreitol Reveals Unique Versus Shared Features of Saccharomyces cerevisiae Stress Responses. J Proteome Res 19(8):3405-3417 PMID:32597660
- Back S, et al. (2019) Site-Specific K63 Ubiquitinomics Provides Insights into Translation Regulation under Stress. J Proteome Res 18(1):309-318 PMID:30489083
- Chen YC, et al. (2018) Glucose intake hampers PKA-regulated HSP90 chaperone activity. Elife 7 PMID:30516470
- Cao L, et al. (2014) N-Glycosylation site analysis of proteins from Saccharomyces cerevisiae by using hydrophilic interaction liquid chromatography-based enrichment, parallel deglycosylation, and mass spectrometry. J Proteome Res 13(3):1485-93 PMID:24527708
- Fang NN, et al. (2014) Rsp5/Nedd4 is the main ubiquitin ligase that targets cytosolic misfolded proteins following heat stress. Nat Cell Biol 16(12):1227-37 PMID:25344756
- Swaney DL, et al. (2013) Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation. Nat Methods 10(7):676-82 PMID:23749301
- Weinert BT, et al. (2013) Lysine succinylation is a frequently occurring modification in prokaryotes and eukaryotes and extensively overlaps with acetylation. Cell Rep 4(4):842-51 PMID:23954790
- Henriksen P, et al. (2012) Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae. Mol Cell Proteomics 11(11):1510-22 PMID:22865919
- Pultz D, et al. (2012) Global mapping of protein phosphorylation events identifies Ste20, Sch9 and the cell-cycle regulatory kinases Cdc28/Pho85 as mediators of fatty acid starvation responses in Saccharomyces cerevisiae. Mol Biosyst 8(3):796-803 PMID:22218487
- Soulard A, et al. (2010) The rapamycin-sensitive phosphoproteome reveals that TOR controls protein kinase A toward some but not all substrates. Mol Biol Cell 21(19):3475-86 PMID:20702584
- Holt LJ, et al. (2009) Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution. Science 325(5948):1682-6 PMID:19779198
- Albuquerque CP, et al. (2008) A multidimensional chromatography technology for in-depth phosphoproteome analysis. Mol Cell Proteomics 7(7):1389-96 PMID:18407956
High-Throughput Literature
Paper(s) associated with one or more pieces of high-throughput evidence in SGD.
No high-throughput literature curated.
Download References (.nbib)
- Guan M, et al. (2023) Delving into the molecular initiating event of cadmium toxification via the dose-dependent functional genomics approach in Saccharomyces cerevisiae. Environ Pollut 323:121287 PMID:36791950
- King GA, et al. (2023) Meiotic nuclear pore complex remodeling provides key insights into nuclear basket organization. J Cell Biol 222(2) PMID:36515990
- Ogbede JU, et al. (2021) A genome-wide portrait of pervasive drug contaminants. Sci Rep 11(1):12487 PMID:34127714
- Mülleder M, et al. (2016) Functional Metabolomics Describes the Yeast Biosynthetic Regulome. Cell 167(2):553-565.e12 PMID:27693354
- Bilanchone V, et al. (2015) Ty3 Retrotransposon Hijacks Mating Yeast RNA Processing Bodies to Infect New Genomes. PLoS Genet 11(9):e1005528 PMID:26421679
- Hoepfner D, et al. (2014) High-resolution chemical dissection of a model eukaryote reveals targets, pathways and gene functions. Microbiol Res 169(2-3):107-20 PMID:24360837
- Ostrow AZ, et al. (2014) Fkh1 and Fkh2 bind multiple chromosomal elements in the S. cerevisiae genome with distinct specificities and cell cycle dynamics. PLoS One 9(2):e87647 PMID:24504085
- Gaytán BD, et al. (2013) Functional profiling discovers the dieldrin organochlorinated pesticide affects leucine availability in yeast. Toxicol Sci 132(2):347-58 PMID:23358190
- Gaytán BD, et al. (2013) A genome-wide screen identifies yeast genes required for tolerance to technical toxaphene, an organochlorinated pesticide mixture. PLoS One 8(11):e81253 PMID:24260565
- Tun NM, et al. (2013) Disulfide stress-induced aluminium toxicity: molecular insights through genome-wide screening of Saccharomyces cerevisiae. Metallomics 5(8):1068-75 PMID:23832094
- Pir P, et al. (2012) The genetic control of growth rate: a systems biology study in yeast. BMC Syst Biol 6:4 PMID:22244311
- Qian W, et al. (2012) The genomic landscape and evolutionary resolution of antagonistic pleiotropy in yeast. Cell Rep 2(5):1399-410 PMID:23103169
- Teng X, et al. (2011) Gene-dependent cell death in yeast. Cell Death Dis 2(8):e188 PMID:21814286
- Villa-García MJ, et al. (2011) Genome-wide screen for inositol auxotrophy in Saccharomyces cerevisiae implicates lipid metabolism in stress response signaling. Mol Genet Genomics 285(2):125-49 PMID:21136082
- Yoshikawa K, et al. (2011) Comprehensive phenotypic analysis of single-gene deletion and overexpression strains of Saccharomyces cerevisiae. Yeast 28(5):349-61 PMID:21341307
- Alamgir M, et al. (2010) Chemical-genetic profile analysis of five inhibitory compounds in yeast. BMC Chem Biol 10:6 PMID:20691087
- Burston HE, et al. (2009) Regulators of yeast endocytosis identified by systematic quantitative analysis. J Cell Biol 185(6):1097-110 PMID:19506040
- Breslow DK, et al. (2008) A comprehensive strategy enabling high-resolution functional analysis of the yeast genome. Nat Methods 5(8):711-8 PMID:18622397
- Jin R, et al. (2008) Large-scale analysis of yeast filamentous growth by systematic gene disruption and overexpression. Mol Biol Cell 19(1):284-96 PMID:17989363
- Hu Z, et al. (2007) Genetic reconstruction of a functional transcriptional regulatory network. Nat Genet 39(5):683-7 PMID:17417638
- Butcher RA, et al. (2006) Microarray-based method for monitoring yeast overexpression strains reveals small-molecule targets in TOR pathway. Nat Chem Biol 2(2):103-9 PMID:16415861
- Giaever G, et al. (2002) Functional profiling of the Saccharomyces cerevisiae genome. Nature 418(6896):387-91 PMID:12140549