Phenotype Help

SNX41 / YDR425W Phenotype

Phenotype annotations for a gene are curated single mutant phenotypes that require an observable (e.g., "cell shape"), a qualifier (e.g., "abnormal"), a mutant type (e.g., null), strain background, and a reference. In addition, annotations are classified as classical genetics or high-throughput (e.g., large scale survey, systematic mutation set). Whenever possible, allele information and additional details are provided.



Annotations

A phenotype is defined as an observable (e.g., apoptosis) and a qualifier (e.g., increased). There may be more than one row with the same phenotype if that phenotype was observed in separate studies or in different conditions, strains, alleles, etc.

18 entries for 12 phenotypes


Increase the total number of rows showing on this page using the pull-down located below the table, or use the page scroll at the table's top right to browse through the table's pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table; click on the small "i" buttons located within a cell for an annotation to view further details.

PhenotypeExperiment TypeMutant InformationStrain BackgroundChemicalDetailsReference
chronological lifespan: decreased
systematic mutation set null
Allele: snx41-Δ
S288CCampos SE, et al. (2018) PMID:29575540
competitive fitness: decreased
competitive growth

fitness profiling using complete deletion alleles

null
Allele: snx41-Δ
S288CMedia: minimal medium
Details: Relative fitness score: 0.968
Breslow DK, et al. (2008) PMID:18622397
competitive fitness: decreased
systematic mutation setnull
Allele: snx41-Δ
S288C ethanolQian W, et al. (2012) PMID:23103169
competitive fitness: decreased
systematic mutation setnull
Allele: snx41-Δ
S288CMedia: glycerol medium, YPG
Qian W, et al. (2012) PMID:23103169
competitive fitness: decreased
systematic mutation setnull
Allele: snx41-Δ
S288CMedia: synthetic complete medium, SC
Qian W, et al. (2012) PMID:23103169
competitive fitness: decreased
systematic mutation setnull
Allele: snx41-Δ
S288CMedia: synthetic oak exudate medium, OAK
Qian W, et al. (2012) PMID:23103169
innate thermotolerance: increased
homozygous diploid, large-scale surveynull
Allele: snx41-Δ
S288CPhase: exponential phase
Treatment: heat shock, 50 °C
Details: resistance scale of 1 (least) to 4 (most) resistant: 3
Jarolim S, et al. (2013) PMID:24142923
killer toxin resistance: decreased
systematic mutation setnull
Allele: snx41-Δ
S288CDetails: K2
Servienė E, et al. (2012) PMID:23227207
protein transport: abnormal
Reporter: Snc1p
classical geneticsnull
Allele: snx41-Δ
S288CDetails: mutant accumulates Snc1p in vacuoles
Hettema EH, et al. (2003) PMID:12554655
protein/peptide accumulation: increased
Reporter: amyloid-beta42-GFP
homozygous diploid, systematic mutation setnull
Allele: snx41-Δ
S288CNair S, et al. (2014) PMID:24870034
Showing 1 to 10 of 18 entries

Shared Phenotypes

This diagram displays phenotype observables (purple squares) that are shared between the given gene (yellow circle) and other genes (gray circles) based on the number of phenotype observables shared (adjustable using the slider at the bottom).


Reset

Click on a gene or phenotype observable name to go to its specific page within SGD; drag any of the gene or observable objects around within the visualization for easier viewing; click “Reset” to automatically redraw the diagram; filter the genes that share observable terms with the given gene by the number of terms they share by clicking anywhere on the slider bar or dragging the tab to the desired filter number.


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