Phenotype Help

SIP1 / YDR422C Phenotype

Phenotype annotations for a gene are curated single mutant phenotypes that require an observable (e.g., "cell shape"), a qualifier (e.g., "abnormal"), a mutant type (e.g., null), strain background, and a reference. In addition, annotations are classified as classical genetics or high-throughput (e.g., large scale survey, systematic mutation set). Whenever possible, allele information and additional details are provided.



Annotations

A phenotype is defined as an observable (e.g., apoptosis) and a qualifier (e.g., increased). There may be more than one row with the same phenotype if that phenotype was observed in separate studies or in different conditions, strains, alleles, etc.

18 entries for 13 phenotypes


Increase the total number of rows showing on this page using the pull-down located below the table, or use the page scroll at the table's top right to browse through the table's pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table; click on the small "i" buttons located within a cell for an annotation to view further details.

PhenotypeExperiment TypeMutant InformationStrain BackgroundChemicalDetailsReference
auxotrophy
homozygous diploid, systematic mutation setnull
Allele: sip1-Δ
S288C myo-inositolVilla-García MJ, et al. (2011) PMID:21136082
chemical compound accumulation: abnormal
systematic mutation setnull
Allele: sip1-Δ
S288C alpha-amino acidDetails: Significantly altered free amino acid profile (X^2- test p < 0.01)
Mülleder M, et al. (2016) PMID:27693354
chemical compound accumulation: decreased
systematic mutation setnull
Allele: sip1-Δ
S288C copper cationYu D, et al. (2012) PMID:23151179
competitive fitness: increased
competitive growth

fitness profiling using complete deletion alleles

null
Allele: sip1-Δ
S288CMedia: minimal medium
Details: Relative fitness score: 1.008
Breslow DK, et al. (2008) PMID:18622397
desiccation resistance: decreased
classical geneticsnull
Allele: sip1-Δ
S288CTreatment: mutants grown to post-diauxic phase and then subject to desiccation
Details: moderately affected with 35-60% survival after desiccation
Ratnakumar S, et al. (2011) PMID:20963216
fermentative metabolism: decreased
classical genetics overexpressionOtherMeng L, et al. (2020) PMID:32571355
filamentous growth: decreased
systematic mutation setnull
Allele: sip1-Δ
Sigma1278bJin R, et al. (2008) PMID:17989363
replicative lifespan: decreased
classical geneticsnull
Allele: sip1-Δ
S288CDetails: mean lifespan was reduced to 82% that of the wild type
Ashrafi K, et al. (2000) PMID:10921902
resistance to chemicals: decreased
homozygous diploid, systematic mutation setnull
Allele: sip1-Δ
S288C460 uM dieldrinGaytán BD, et al. (2013) PMID:23358190
resistance to chemicals: decreased
heterozygous diploid, systematic mutation set null
Allele: sip1-Δ
S288C3 μg/mL doxorubicinLum PY, et al. (2004) PMID:14718172
Showing 1 to 10 of 18 entries

Shared Phenotypes

This diagram displays phenotype observables (purple squares) that are shared between the given gene (yellow circle) and other genes (gray circles) based on the number of phenotype observables shared (adjustable using the slider at the bottom).


Reset

Click on a gene or phenotype observable name to go to its specific page within SGD; drag any of the gene or observable objects around within the visualization for easier viewing; click “Reset” to automatically redraw the diagram; filter the genes that share observable terms with the given gene by the number of terms they share by clicking anywhere on the slider bar or dragging the tab to the desired filter number.


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