Phenotype Help

CDC40 / YDR364C Phenotype

Phenotype annotations for a gene are curated single mutant phenotypes that require an observable (e.g., "cell shape"), a qualifier (e.g., "abnormal"), a mutant type (e.g., null), strain background, and a reference. In addition, annotations are classified as classical genetics or high-throughput (e.g., large scale survey, systematic mutation set). Whenever possible, allele information and additional details are provided.


Summary
Non-essential gene in S288C, but essential in the Sigma1278b background; null mutant has slow growth in S288C, and is unable to grow anaerobically; conditional mutants accumulate splicing intermediates and both SPBs and mitotic spindles are absent; homozygous conditional mutants have deceased microtubule staining, defects in meiotic recombination and chromosome segregation and are sensitive to treatment with MMS; null mutants have cell cycle defects in G1 and S phase, abnormally elongated buds, delayed bud emergence, decreased chronological lifespan, reduced survival in stationary phase, and decreased spontaneous direct-repeat recombination

Annotations

A phenotype is defined as an observable (e.g., apoptosis) and a qualifier (e.g., increased). There may be more than one row with the same phenotype if that phenotype was observed in separate studies or in different conditions, strains, alleles, etc.

85 entries for 37 phenotypes


Increase the total number of rows showing on this page using the pull-down located below the table, or use the page scroll at the table's top right to browse through the table's pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table; click on the small "i" buttons located within a cell for an annotation to view further details.

PhenotypeExperiment TypeMutant InformationStrain BackgroundChemicalDetailsReference
acid pH resistance: decreased
systematic mutation setnull
Allele: cdc40-Δ
S288C0.1-0.4% boric acidSchmidt M, et al. (2012) PMID:22902726
bud morphology: abnormal
systematic mutation setnull
Allele: cdc40-Δ
S288CDetails: bud is abnormally elongated
Watanabe M, et al. (2009) PMID:19466415
budding: delayed
classical geneticsnull
Allele: cdc40-Δ
OtherTemperature: elevated temperature, 36 °C
Treatment: alpha-factor block release
Details: synchronized cells are delayed in bud emergence
Vaisman N, et al. (1995) PMID:7753021
cell cycle progression in S phase: delayed
classical geneticsnull
Allele: cdc40-Δ
OtherTemperature: elevated temperature, 36 °C
Treatment: alpha-factor block release
Details: synchronized cells enter S phase and accumulate as large budded cells with a 2N DNA content, delayed in progression through S phase
Vaisman N, et al. (1995) PMID:7753021
cell cycle progression: arrested
classical geneticsnull
Allele: cdc40-Δ
OtherPhase: asynchronous
Temperature: elevated temperature, 36 °C
Details: asynchronous cells treated with hydroxyurea after arrest and temperature shiftdown or treated with pretreated with hydroxyurea demonstrate that cells in G1 cannot enter S phase, and cells in S phase cannot complete it, and cells in G2 and/or M phase complete the cell cycle
Vaisman N, et al. (1995) PMID:7753021
cell size: increased
systematic mutation set

analysis of cell size for mutants in the systematic deletion collection

null
Allele: cdc40-Δ
S288CDetails: mutant is among the largest 5% of haploid deletion strains
Jorgensen P, et al. (2002) PMID:12089449
chemical compound accumulation: decreased
homozygous diploid, systematic mutation set

glycogen accumulation in diploid mutant strains grown in microtiter plates

null
Allele: cdc40-Δ
S288C glycogenWilson WA, et al. (2002) PMID:12096123
chemical compound accumulation: decreased
systematic mutation setnull
Allele: cdc40-Δ
S288C cadmium cationYu D, et al. (2012) PMID:23151179
chemical compound accumulation: decreased
systematic mutation setnull
Allele: cdc40-Δ
S288C cobalt cationYu D, et al. (2012) PMID:23151179
chemical compound accumulation: decreased
systematic mutation setnull
Allele: cdc40-Δ
S288C protonMedia: external pH 5.0
Orij R, et al. (2012) PMID:23021432
Showing 1 to 10 of 85 entries

Shared Phenotypes

This diagram displays phenotype observables (purple squares) that are shared between the given gene (yellow circle) and other genes (gray circles) based on the number of phenotype observables shared (adjustable using the slider at the bottom).


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