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TSR1 / YDL060W Literature
All manually curated literature for the specified gene, organized by relevance to the gene and by
association with specific annotations to the gene in SGD. SGD gathers references via a PubMed search for
papers whose titles or abstracts contain “yeast” or “cerevisiae;” these papers are reviewed manually and
linked to relevant genes and literature topics by SGD curators.
Primary Literature
Literature that either focuses on the gene or contains information about function, biological role,
cellular location, phenotype, regulation, structure, or disease homologs in other species for the gene
or gene product.
No primary literature curated.
Download References (.nbib)
- Black JJ and Johnson AW (2022) Release of the ribosome biogenesis factor Bud23 from small subunit precursors in yeast. RNA 28(3):371-389 PMID:34934010
- Cheng J, et al. (2022) The nucleoplasmic phase of pre-40S formation prior to nuclear export. Nucleic Acids Res 50(20):11924-11937 PMID:36321656
- Rössler I, et al. (2022) The C-terminal tail of ribosomal protein Rps15 is engaged in cytoplasmic pre-40S maturation. RNA Biol 19(1):560-574 PMID:35438042
- Rai J, et al. (2021) An open interface in the pre-80S ribosome coordinated by ribosome assembly factors Tsr1 and Dim1 enables temporal regulation of Fap7. RNA 27(2):221-233 PMID:33219089
- Huang H, et al. (2020) Quality control of 40S ribosome head assembly ensures scanning competence. J Cell Biol 219(11) PMID:33007085
- Shayan R, et al. (2020) Good Vibrations: Structural Remodeling of Maturing Yeast Pre-40S Ribosomal Particles Followed by Cryo-Electron Microscopy. Molecules 25(5) PMID:32138239
- Scaiola A, et al. (2018) Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit. EMBO J 37(7) PMID:29459436
- Belhabich-Baumas K, et al. (2017) The Rio1p ATPase hinders premature entry into translation of late pre-40S pre-ribosomal particles. Nucleic Acids Res 45(18):10824-10836 PMID:28977579
- Heuer A, et al. (2017) Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae. Elife 6 PMID:29155690
- Moriggi G, et al. (2017) Focal accumulation of preribosomes outside the nucleolus during metaphase-anaphase in budding yeast. RNA 23(9):1432-1443 PMID:28588079
- Sun Q, et al. (2017) Molecular architecture of the 90S small subunit pre-ribosome. Elife 6 PMID:28244370
- McCaughan UM, et al. (2016) Pre-40S ribosome biogenesis factor Tsr1 is an inactive structural mimic of translational GTPases. Nat Commun 7:11789 PMID:27250689
- Hector RD, et al. (2014) Snapshots of pre-rRNA structural flexibility reveal eukaryotic 40S assembly dynamics at nucleotide resolution. Nucleic Acids Res 42(19):12138-54 PMID:25200078
- Lee K, et al. (2014) Proteome-wide remodeling of protein location and function by stress. Proc Natl Acad Sci U S A 111(30):E3157-66 PMID:25028499
- Turowski TW, et al. (2014) Rio1 mediates ATP-dependent final maturation of 40S ribosomal subunits. Nucleic Acids Res 42(19):12189-99 PMID:25294836
- Tkach JM, et al. (2012) Dissecting DNA damage response pathways by analysing protein localization and abundance changes during DNA replication stress. Nat Cell Biol 14(9):966-76 PMID:22842922
- Strunk BS, et al. (2011) Ribosome assembly factors prevent premature translation initiation by 40S assembly intermediates. Science 333(6048):1449-53 PMID:21835981
- Fassio CA, et al. (2010) Dominant mutations in the late 40S biogenesis factor Ltv1 affect cytoplasmic maturation of the small ribosomal subunit in Saccharomyces cerevisiae. Genetics 185(1):199-209 PMID:20215468
- Granneman S, et al. (2010) Cracking pre-40S ribosomal subunit structure by systematic analyses of RNA-protein cross-linking. EMBO J 29(12):2026-36 PMID:20453830
- Merl J, et al. (2010) Analysis of ribosome biogenesis factor-modules in yeast cells depleted from pre-ribosomes. Nucleic Acids Res 38(9):3068-80 PMID:20100801
- Léger-Silvestre I, et al. (2005) Specific Role for Yeast Homologs of the Diamond Blackfan Anemia-associated Rps19 Protein in Ribosome Synthesis. J Biol Chem 280(46):38177-85 PMID:16159874
- Léger-Silvestre I, et al. (2004) The ribosomal protein Rps15p is required for nuclear exit of the 40S subunit precursors in yeast. EMBO J 23(12):2336-47 PMID:15167894
- Wu LF, et al. (2002) Large-scale prediction of Saccharomyces cerevisiae gene function using overlapping transcriptional clusters. Nat Genet 31(3):255-65 PMID:12089522
- Gelperin D, et al. (2001) Bms1p, a novel GTP-binding protein, and the related Tsr1p are required for distinct steps of 40S ribosome biogenesis in yeast. RNA 7(9):1268-83 PMID:11565749
Related Literature
Genes that share literature (indicated by the purple circles) with the specified gene (indicated by yellow circle).
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Additional Literature
Papers that show experimental evidence for the gene or describe homologs in other species, but
for which the gene is not the paper’s principal focus.
No additional literature curated.
Download References (.nbib)
- Pöll G, et al. (2023) Impact of the yeast S0/uS2-cluster ribosomal protein rpS21/eS21 on rRNA folding and the architecture of small ribosomal subunit precursors. PLoS One 18(3):e0283698 PMID:36996028
- Lanz MC, et al. (2021) In-depth and 3-dimensional exploration of the budding yeast phosphoproteome. EMBO Rep 22(2):e51121 PMID:33491328
- Ghalei H, et al. (2017) The ATPase Fap7 Tests the Ability to Carry Out Translocation-like Conformational Changes and Releases Dim1 during 40S Ribosome Maturation. Mol Cell 67(6):990-1000.e3 PMID:28890337
- Larburu N, et al. (2016) Structure of a human pre-40S particle points to a role for RACK1 in the final steps of 18S rRNA processing. Nucleic Acids Res 44(17):8465-78 PMID:27530427
- Mitterer V, et al. (2016) Sequential domain assembly of ribosomal protein S3 drives 40S subunit maturation. Nat Commun 7:10336 PMID:26831757
- Jovičić A, et al. (2015) Modifiers of C9orf72 dipeptide repeat toxicity connect nucleocytoplasmic transport defects to FTD/ALS. Nat Neurosci 18(9):1226-9 PMID:26308983
- Menconi G, et al. (2015) Global mapping of DNA conformational flexibility on Saccharomyces cerevisiae. PLoS Comput Biol 11(4):e1004136 PMID:25860149
- Strunk BS, et al. (2012) A translation-like cycle is a quality control checkpoint for maturing 40S ribosome subunits. Cell 150(1):111-21 PMID:22770215
- Campbell MG and Karbstein K (2011) Protein-protein interactions within late pre-40S ribosomes. PLoS One 6(1):e16194 PMID:21283762
- Carron C, et al. (2011) Analysis of two human pre-ribosomal factors, bystin and hTsr1, highlights differences in evolution of ribosome biogenesis between yeast and mammals. Nucleic Acids Res 39(1):280-91 PMID:20805244
- Dosil M (2011) Ribosome synthesis-unrelated functions of the preribosomal factor Rrp12 in cell cycle progression and the DNA damage response. Mol Cell Biol 31(12):2422-38 PMID:21482668
- Pérez-Fernández J, et al. (2011) Elucidation of the assembly events required for the recruitment of Utp20, Imp4 and Bms1 onto nascent pre-ribosomes. Nucleic Acids Res 39(18):8105-21 PMID:21724601
- Neueder A, et al. (2010) A local role for the small ribosomal subunit primary binder rpS5 in final 18S rRNA processing in yeast. PLoS One 5(4):e10194 PMID:20419091
- Chen AK, et al. (2009) Response of Saccharomyces cerevisiae to stress-free acidification. J Microbiol 47(1):1-8 PMID:19229485
- Lebaron S, et al. (2009) The ATPase and helicase activities of Prp43p are stimulated by the G-patch protein Pfa1p during yeast ribosome biogenesis. EMBO J 28(24):3808-19 PMID:19927118
- Li Z, et al. (2009) Rational extension of the ribosome biogenesis pathway using network-guided genetics. PLoS Biol 7(10):e1000213 PMID:19806183
- Ungar L, et al. (2009) A genome-wide screen for essential yeast genes that affect telomere length maintenance. Nucleic Acids Res 37(12):3840-9 PMID:19386622
- Breslow DK, et al. (2008) A comprehensive strategy enabling high-resolution functional analysis of the yeast genome. Nat Methods 5(8):711-8 PMID:18622397
- Ferré S and King RD (2006) Finding motifs in protein secondary structure for use in function prediction. J Comput Biol 13(3):719-31 PMID:16706721
- Schäfer T, et al. (2006) Hrr25-dependent phosphorylation state regulates organization of the pre-40S subunit. Nature 441(7093):651-5 PMID:16738661
- Wade CH, et al. (2006) The budding yeast rRNA and ribosome biosynthesis (RRB) regulon contains over 200 genes. Yeast 23(4):293-306 PMID:16544271
- D'Elia R, et al. (2005) Homozygous diploid deletion strains of Saccharomyces cerevisiae that determine lag phase and dehydration tolerance. Appl Microbiol Biotechnol 67(6):816-26 PMID:15968571
- Lai LC, et al. (2005) Dynamical remodeling of the transcriptome during short-term anaerobiosis in Saccharomyces cerevisiae: differential response and role of Msn2 and/or Msn4 and other factors in galactose and glucose media. Mol Cell Biol 25(10):4075-91 PMID:15870279
- Milkereit P, et al. (2003) The pre-ribosomal network. Nucleic Acids Res 31(3):799-804 PMID:12560474
- Grandi P, et al. (2002) 90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors. Mol Cell 10(1):105-15 PMID:12150911
- Casalone E, et al. (1999) Disruption and phenotypic analysis of six novel genes from chromosome IV of Saccharomyces cerevisiae reveal YDL060w as an essential gene for vegetative growth. Yeast 15(15):1691-701 PMID:10572265
Reviews
No reviews curated.
Gene Ontology Literature
Paper(s) associated with one or more GO (Gene Ontology) terms in SGD for the specified gene.
No gene ontology literature curated.
Download References (.nbib)
- Tkach JM, et al. (2012) Dissecting DNA damage response pathways by analysing protein localization and abundance changes during DNA replication stress. Nat Cell Biol 14(9):966-76 PMID:22842922
- Léger-Silvestre I, et al. (2004) The ribosomal protein Rps15p is required for nuclear exit of the 40S subunit precursors in yeast. EMBO J 23(12):2336-47 PMID:15167894
- Grandi P, et al. (2002) 90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors. Mol Cell 10(1):105-15 PMID:12150911
- Wu LF, et al. (2002) Large-scale prediction of Saccharomyces cerevisiae gene function using overlapping transcriptional clusters. Nat Genet 31(3):255-65 PMID:12089522
- Gelperin D, et al. (2001) Bms1p, a novel GTP-binding protein, and the related Tsr1p are required for distinct steps of 40S ribosome biogenesis in yeast. RNA 7(9):1268-83 PMID:11565749
Disease Literature
Paper(s) associated with one or more pieces of disease evidence in SGD, as found on the Disease page.
No disease literature curated.
Interaction Literature
Paper(s) associated with evidence supporting a physical or genetic interaction between the
specified gene and another gene in SGD. Currently, all interaction evidence is obtained from
BioGRID.
No interaction literature curated.
Download References (.nbib)
- Filali-Mouncef Y, et al. (2024) An APEX2-based proximity-dependent biotinylation assay with temporal specificity to study protein interactions during autophagy in the yeast Saccharomyces cerevisiae. Autophagy 20(10):2323-2337 PMID:38958087
- Jiang L, et al. (2024) Identification of the Beta Subunit Fas1p of Fatty Acid Synthetase as an Interacting Partner of Yeast Calcium/Calmodulin-Dependent Protein Kinase Cmk2p Through Mass Spectrometry Analysis. Appl Biochem Biotechnol 196(10):6836-6848 PMID:38411936
- Marmorale LJ, et al. (2024) Fast-evolving cofactors regulate the role of HEATR5 complexes in intra-Golgi trafficking. J Cell Biol 223(3) PMID:38240799
- O'Brien MJ and Ansari A (2024) Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle. Biochim Biophys Acta Proteins Proteom 1872(1):140968 PMID:37863410
- Sekiguchi T, et al. (2024) Interaction between Gtr2p and ribosomal Rps31p affects the incorporation of Rps31p into ribosomes of Saccharomyces cerevisiae. Biochem Biophys Res Commun 699:149499 PMID:38281328
- Ali A, et al. (2023) Adaptive preservation of orphan ribosomal proteins in chaperone-dispersed condensates. Nat Cell Biol 25(11):1691-1703 PMID:37845327
- Blomqvist EK, et al. (2023) A disease associated mutant reveals how Ltv1 orchestrates RP assembly and rRNA folding of the small ribosomal subunit head. PLoS Genet 19(11):e1010862 PMID:37910572
- Hadjicharalambous A, et al. (2023) Checkpoint kinase interaction with DNA polymerase alpha regulates replication progression during stress. Wellcome Open Res 8:327 PMID:37766847
- Josefson R, et al. (2023) The GET pathway is a major bottleneck for maintaining proteostasis in Saccharomyces cerevisiae. Sci Rep 13(1):9285 PMID:37286562
- Meyer L, et al. (2023) eIF2A represses cell wall biogenesis gene expression in Saccharomyces cerevisiae. PLoS One 18(11):e0293228 PMID:38011112
- Michaelis AC, et al. (2023) The social and structural architecture of the yeast protein interactome. Nature 624(7990):192-200 PMID:37968396
- Pöll G, et al. (2023) Impact of the yeast S0/uS2-cluster ribosomal protein rpS21/eS21 on rRNA folding and the architecture of small ribosomal subunit precursors. PLoS One 18(3):e0283698 PMID:36996028
- Smurova K, et al. (2023) Rio1 downregulates centromeric RNA levels to promote the timely assembly of structurally fit kinetochores. Nat Commun 14(1):3172 PMID:37263996
- Bhutada P, et al. (2022) Rbp95 binds to 25S rRNA helix H95 and cooperates with the Npa1 complex during early pre-60S particle maturation. Nucleic Acids Res 50(17):10053-10077 PMID:36018804
- Cheng J, et al. (2022) The nucleoplasmic phase of pre-40S formation prior to nuclear export. Nucleic Acids Res 50(20):11924-11937 PMID:36321656
- Gavade JN, et al. (2022) Identification of 14-3-3 proteins, Polo kinase, and RNA-binding protein Pes4 as key regulators of meiotic commitment in budding yeast. Curr Biol 32(7):1534-1547.e9 PMID:35240051
- Rössler I, et al. (2022) The C-terminal tail of ribosomal protein Rps15 is engaged in cytoplasmic pre-40S maturation. RNA Biol 19(1):560-574 PMID:35438042
- Gopalakrishnan R and Winston F (2021) The histone chaperone Spt6 is required for normal recruitment of the capping enzyme Abd1 to transcribed regions. J Biol Chem 297(4):101205 PMID:34543624
- Black JJ, et al. (2020) Bud23 promotes the final disassembly of the small subunit Processome in Saccharomyces cerevisiae. PLoS Genet 16(12):e1009215 PMID:33306676
- den Brave F, et al. (2020) Chaperone-Mediated Protein Disaggregation Triggers Proteolytic Clearance of Intra-nuclear Protein Inclusions. Cell Rep 31(9):107680 PMID:32492414
- Rogers CM, et al. (2020) The Genetic and Physical Interactomes of the Saccharomyces cerevisiae Hrq1 Helicase. G3 (Bethesda) 10(12):4347-4357 PMID:33115721
- Bhalla P, et al. (2019) Interactome of the yeast RNA polymerase III transcription machinery constitutes several chromatin modifiers and regulators of the genes transcribed by RNA polymerase II. Gene 702:205-214 PMID:30593915
- Cepeda LPP, et al. (2019) The ribosome assembly factor Nop53 controls association of the RNA exosome with pre-60S particles in yeast. J Biol Chem 294(50):19365-19380 PMID:31662437
- Deshpande I, et al. (2019) The Sir4 H-BRCT domain interacts with phospho-proteins to sequester and repress yeast heterochromatin. EMBO J 38(20):e101744 PMID:31515872
- Gnanasundram SV, et al. (2019) At least two molecules of the RNA helicase Has1 are simultaneously present in pre-ribosomes during ribosome biogenesis. Nucleic Acids Res 47(20):10852-10864 PMID:31511893
- Linnemann J, et al. (2019) Impact of two neighbouring ribosomal protein clusters on biogenesis factor binding and assembly of yeast late small ribosomal subunit precursors. PLoS One 14(1):e0203415 PMID:30653518
- Rössler I, et al. (2019) Tsr4 and Nap1, two novel members of the ribosomal protein chaperOME. Nucleic Acids Res 47(13):6984-7002 PMID:31062022
- Black JJ, et al. (2018) Utp14 interaction with the small subunit processome. RNA 24(9):1214-1228 PMID:29925570
- Dehecq M, et al. (2018) Nonsense-mediated mRNA decay involves two distinct Upf1-bound complexes. EMBO J 37(21) PMID:30275269
- Mount HO, et al. (2018) Global analysis of genetic circuitry and adaptive mechanisms enabling resistance to the azole antifungal drugs. PLoS Genet 14(4):e1007319 PMID:29702647
- Scaiola A, et al. (2018) Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit. EMBO J 37(7) PMID:29459436
- Belhabich-Baumas K, et al. (2017) The Rio1p ATPase hinders premature entry into translation of late pre-40S pre-ribosomal particles. Nucleic Acids Res 45(18):10824-10836 PMID:28977579
- Chymkowitch P, et al. (2017) TORC1-dependent sumoylation of Rpc82 promotes RNA polymerase III assembly and activity. Proc Natl Acad Sci U S A 114(5):1039-1044 PMID:28096404
- Ghalei H, et al. (2017) The ATPase Fap7 Tests the Ability to Carry Out Translocation-like Conformational Changes and Releases Dim1 during 40S Ribosome Maturation. Mol Cell 67(6):990-1000.e3 PMID:28890337
- Heuer A, et al. (2017) Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae. Elife 6 PMID:29155690
- Johnson MC, et al. (2017) Structural Heterogeneity in Pre-40S Ribosomes. Structure 25(2):329-340 PMID:28111018
- Sturm M, et al. (2017) Interdependent action of KH domain proteins Krr1 and Dim2 drive the 40S platform assembly. Nat Commun 8(1):2213 PMID:29263326
- Sun Q, et al. (2017) Molecular architecture of the 90S small subunit pre-ribosome. Elife 6 PMID:28244370
- Costanzo M, et al. (2016) A global genetic interaction network maps a wiring diagram of cellular function. Science 353(6306) PMID:27708008
- Peña C, et al. (2016) Prefabrication of a ribosomal protein subcomplex essential for eukaryotic ribosome formation. Elife 5 PMID:27929371
- Woodford MR, et al. (2016) Mps1 Mediated Phosphorylation of Hsp90 Confers Renal Cell Carcinoma Sensitivity and Selectivity to Hsp90 Inhibitors. Cell Rep 14(4):872-884 PMID:26804907
- Fischer U, et al. (2015) A non-canonical mechanism for Crm1-export cargo complex assembly. Elife 4 PMID:25895666
- Kershaw CJ, et al. (2015) Integrated multi-omics analyses reveal the pleiotropic nature of the control of gene expression by Puf3p. Sci Rep 5:15518 PMID:26493364
- Kırlı K, et al. (2015) A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Elife 4 PMID:26673895
- Truman AW, et al. (2015) The quantitative changes in the yeast Hsp70 and Hsp90 interactomes upon DNA damage. Data Brief 2:12-5 PMID:26217697
- Truman AW, et al. (2015) Quantitative proteomics of the yeast Hsp70/Hsp90 interactomes during DNA damage reveal chaperone-dependent regulation of ribonucleotide reductase. J Proteomics 112:285-300 PMID:25452130
- Hector RD, et al. (2014) Snapshots of pre-rRNA structural flexibility reveal eukaryotic 40S assembly dynamics at nucleotide resolution. Nucleic Acids Res 42(19):12138-54 PMID:25200078
- Moriggi G, et al. (2014) Rrp12 and the Exportin Crm1 participate in late assembly events in the nucleolus during 40S ribosomal subunit biogenesis. PLoS Genet 10(12):e1004836 PMID:25474739
- Schütz S, et al. (2014) A RanGTP-independent mechanism allows ribosomal protein nuclear import for ribosome assembly. Elife 3:e03473 PMID:25144938
- Mitchell SF, et al. (2013) Global analysis of yeast mRNPs. Nat Struct Mol Biol 20(1):127-33 PMID:23222640
- Srikumar T, et al. (2013) A global S. cerevisiae small ubiquitin-related modifier (SUMO) system interactome. Mol Syst Biol 9:668 PMID:23712011
- van Pel DM, et al. (2013) Saccharomyces cerevisiae genetics predicts candidate therapeutic genetic interactions at the mammalian replication fork. G3 (Bethesda) 3(2):273-82 PMID:23390603
- Willmund F, et al. (2013) The cotranslational function of ribosome-associated Hsp70 in eukaryotic protein homeostasis. Cell 152(1-2):196-209 PMID:23332755
- Figaro S, et al. (2012) Trm112 is required for Bud23-mediated methylation of the 18S rRNA at position G1575. Mol Cell Biol 32(12):2254-67 PMID:22493060
- Strunk BS, et al. (2012) A translation-like cycle is a quality control checkpoint for maturing 40S ribosome subunits. Cell 150(1):111-21 PMID:22770215
- Campbell MG and Karbstein K (2011) Protein-protein interactions within late pre-40S ribosomes. PLoS One 6(1):e16194 PMID:21283762
- Dosil M (2011) Ribosome synthesis-unrelated functions of the preribosomal factor Rrp12 in cell cycle progression and the DNA damage response. Mol Cell Biol 31(12):2422-38 PMID:21482668
- Pérez-Fernández J, et al. (2011) Elucidation of the assembly events required for the recruitment of Utp20, Imp4 and Bms1 onto nascent pre-ribosomes. Nucleic Acids Res 39(18):8105-21 PMID:21724601
- Strunk BS, et al. (2011) Ribosome assembly factors prevent premature translation initiation by 40S assembly intermediates. Science 333(6048):1449-53 PMID:21835981
- Breitkreutz A, et al. (2010) A global protein kinase and phosphatase interaction network in yeast. Science 328(5981):1043-6 PMID:20489023
- Merl J, et al. (2010) Analysis of ribosome biogenesis factor-modules in yeast cells depleted from pre-ribosomes. Nucleic Acids Res 38(9):3068-80 PMID:20100801
- Wilmes GM, et al. (2008) A genetic interaction map of RNA-processing factors reveals links between Sem1/Dss1-containing complexes and mRNA export and splicing. Mol Cell 32(5):735-46 PMID:19061648
- Thomson E, et al. (2007) Nop9 is an RNA binding protein present in pre-40S ribosomes and required for 18S rRNA synthesis in yeast. RNA 13(12):2165-74 PMID:17956976
- Gavin AC, et al. (2006) Proteome survey reveals modularity of the yeast cell machinery. Nature 440(7084):631-6 PMID:16429126
- Krogan NJ, et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 440(7084):637-43 PMID:16554755
- Schäfer T, et al. (2006) Hrr25-dependent phosphorylation state regulates organization of the pre-40S subunit. Nature 441(7093):651-5 PMID:16738661
- Graumann J, et al. (2004) Applicability of tandem affinity purification MudPIT to pathway proteomics in yeast. Mol Cell Proteomics 3(3):226-37 PMID:14660704
- Léger-Silvestre I, et al. (2004) The ribosomal protein Rps15p is required for nuclear exit of the 40S subunit precursors in yeast. EMBO J 23(12):2336-47 PMID:15167894
- Schäfer T, et al. (2003) The path from nucleolar 90S to cytoplasmic 40S pre-ribosomes. EMBO J 22(6):1370-80 PMID:12628929
- Gavin AC, et al. (2002) Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415(6868):141-7 PMID:11805826
- Grandi P, et al. (2002) 90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors. Mol Cell 10(1):105-15 PMID:12150911
- Ho Y, et al. (2002) Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature 415(6868):180-3 PMID:11805837
Regulation Literature
Paper(s) associated with one or more pieces of regulation evidence in SGD, as found on the
Regulation page.
No regulation literature curated.
Post-translational Modifications Literature
Paper(s) associated with one or more pieces of post-translational modifications evidence in SGD.
No post-translational modifications literature curated.
Download References (.nbib)
- Leutert M, et al. (2023) The regulatory landscape of the yeast phosphoproteome. Nat Struct Mol Biol 30(11):1761-1773 PMID:37845410
- Lanz MC, et al. (2021) In-depth and 3-dimensional exploration of the budding yeast phosphoproteome. EMBO Rep 22(2):e51121 PMID:33491328
- Zhou X, et al. (2021) Cross-compartment signal propagation in the mitotic exit network. Elife 10 PMID:33481703
- Swaney DL, et al. (2013) Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation. Nat Methods 10(7):676-82 PMID:23749301
- Henriksen P, et al. (2012) Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae. Mol Cell Proteomics 11(11):1510-22 PMID:22865919
High-Throughput Literature
Paper(s) associated with one or more pieces of high-throughput evidence in SGD.
No high-throughput literature curated.
Download References (.nbib)
- Songdech P, et al. (2024) Increased production of isobutanol from xylose through metabolic engineering of Saccharomyces cerevisiae overexpressing transcription factor Znf1 and exogenous genes. FEMS Yeast Res 24 PMID:38331422
- Forster DT, et al. (2022) BIONIC: biological network integration using convolutions. Nat Methods 19(10):1250-1261 PMID:36192463
- Mondeel TDGA, et al. (2019) ChIP-exo analysis highlights Fkh1 and Fkh2 transcription factors as hubs that integrate multi-scale networks in budding yeast. Nucleic Acids Res 47(15):7825-7841 PMID:31299083
- Ohnuki S and Ohya Y (2018) High-dimensional single-cell phenotyping reveals extensive haploinsufficiency. PLoS Biol 16(5):e2005130 PMID:29768403
- Ostrow AZ, et al. (2014) Fkh1 and Fkh2 bind multiple chromosomal elements in the S. cerevisiae genome with distinct specificities and cell cycle dynamics. PLoS One 9(2):e87647 PMID:24504085
- Choy JS, et al. (2013) Genome-wide haploinsufficiency screen reveals a novel role for γ-TuSC in spindle organization and genome stability. Mol Biol Cell 24(17):2753-63 PMID:23825022
- Jarolim S, et al. (2013) Saccharomyces cerevisiae genes involved in survival of heat shock. G3 (Bethesda) 3(12):2321-33 PMID:24142923
- Davey HM, et al. (2012) Genome-wide analysis of longevity in nutrient-deprived Saccharomyces cerevisiae reveals importance of recycling in maintaining cell viability. Environ Microbiol 14(5):1249-60 PMID:22356628
- Pir P, et al. (2012) The genetic control of growth rate: a systems biology study in yeast. BMC Syst Biol 6:4 PMID:22244311
- Venters BJ, et al. (2011) A comprehensive genomic binding map of gene and chromatin regulatory proteins in Saccharomyces. Mol Cell 41(4):480-92 PMID:21329885
- Ungar L, et al. (2009) A genome-wide screen for essential yeast genes that affect telomere length maintenance. Nucleic Acids Res 37(12):3840-9 PMID:19386622
- Breslow DK, et al. (2008) A comprehensive strategy enabling high-resolution functional analysis of the yeast genome. Nat Methods 5(8):711-8 PMID:18622397
- Cipollina C, et al. (2008) Saccharomyces cerevisiae SFP1: at the crossroads of central metabolism and ribosome biogenesis. Microbiology (Reading) 154(Pt 6):1686-1699 PMID:18524923
- MacIsaac KD, et al. (2006) An improved map of conserved regulatory sites for Saccharomyces cerevisiae. BMC Bioinformatics 7:113 PMID:16522208
- Giaever G, et al. (2002) Functional profiling of the Saccharomyces cerevisiae genome. Nature 418(6896):387-91 PMID:12140549