Phenotype annotations for a gene are curated single mutant phenotypes that require an observable (e.g., "cell shape"), a qualifier (e.g., "abnormal"), a mutant type (e.g., null), strain background, and a reference. In addition, annotations are classified as classical genetics or high-throughput (e.g., large scale survey, systematic mutation set). Whenever possible, allele information and additional details are provided.
A phenotype is defined as an observable (e.g., apoptosis) and a qualifier (e.g., increased). There may be more than one row with the same phenotype if that phenotype was observed in separate studies or in different conditions, strains, alleles, etc.
78 entries for 30 phenotypesIncrease the total number of rows showing on this page using the pull-down located below the table, or use the page scroll at the table's top right to browse through the table's pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table; click on the small "i" buttons located within a cell for an annotation to view further details.
| Phenotype | Experiment Type | Mutant Information | Strain Background | Chemical | Details | Reference |
|---|---|---|---|---|---|---|
| bud morphology: abnormal | systematic mutation set | null Allele: nup133-Δ | S288C | Details: bud is abnormally elongated | Watanabe M, et al. (2009) PMID:19466415 | |
| chemical compound accumulation: abnormal | systematic mutation set | null Allele: nup133-Δ | S288C | alpha-amino acid | Details: Significantly altered free amino acid profile (X^2- test adjusted p < 0.01), showing 2 simultaneous amino acid changes (Z-test, adjusted p < 0.01) | Mülleder M, et al. (2016) PMID:27693354 |
| chemical compound accumulation: increased | homozygous diploid | null Allele: nup133-Δ | S288C | 0.1 mM potassium tellurite, tellurium atom | Ottosson LG, et al. (2010) PMID:20675578 | |
| chemical compound accumulation: increased | systematic mutation set | null Allele: nup133-Δ | S288C | proline | Mülleder M, et al. (2016) PMID:27693354 | |
| chemical compound accumulation: increased | systematic mutation set | null Allele: nup133-Δ | S288C | glutamate(1-) | Mülleder M, et al. (2016) PMID:27693354 | |
| chitin deposition: increased | systematic mutation set | null Allele: nup133-Δ | S288C | Details: Chitin level (nmole GlcNAc/mg dry weight): 25.7 | Lesage G, et al. (2005) PMID:15715908 | |
| chromosome/plasmid maintenance: abnormal | homozygous diploid | null Allele: nup133-Δ | S288C | Details: loss of heterozygosity at the SAM2 locus increased 20-fold or greater, at MET15 increased 2-6 fold, but not changed at MAT | Andersen MP, et al. (2008) PMID:18562670 | |
| chromosome/plasmid maintenance: abnormal | classical genetics | null Allele: nup133-Δ | S288C | Assay: a-like faker (ALF) assay Details: indicative of chromosome instability (CIN); high confidence set; 2- to 80-fold increase relative to wildtype | Yuen KW, et al. (2007) PMID:17360454 | |
| colony sectoring: increased | classical genetics | null Allele: nup133-Δ | S288C | Assay: chromosome transmission fidelity (CTF) assay Details: indicative of chromosome instability (CIN); high confidence set; mild sectoring phenotype | Yuen KW, et al. (2007) PMID:17360454 | |
| competitive fitness: decreased | homozygous diploid, competitive growth genome-wide fitness profiling | null Allele: nup133-Δ | S288C | Media: YPD Details: Relative fitness score: 0.875 | Deutschbauer AM, et al. (2005) PMID:15716499 |
This diagram displays phenotype observables (purple squares) that are shared between the given gene (yellow circle) and other genes (gray circles) based on the number of phenotype observables shared (adjustable using the slider at the bottom).
Click on a gene or phenotype observable name to go to its specific page within SGD; drag any of the gene or observable objects around within the visualization for easier viewing; click “Reset” to automatically redraw the diagram; filter the genes that share observable terms with the given gene by the number of terms they share by clicking anywhere on the slider bar or dragging the tab to the desired filter number.
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