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RPF2 / YKR081C Literature
All manually curated literature for the specified gene, organized by relevance to the gene and by
association with specific annotations to the gene in SGD. SGD gathers references via a PubMed search for
papers whose titles or abstracts contain “yeast” or “cerevisiae;” these papers are reviewed manually and
linked to relevant genes and literature topics by SGD curators.
Primary Literature
Literature that either focuses on the gene or contains information about function, biological role,
cellular location, phenotype, regulation, structure, or disease homologs in other species for the gene
or gene product.
No primary literature curated.
Download References (.nbib)
- Thoms M, et al. (2018) Suppressor mutations in Rpf2-Rrs1 or Rpl5 bypass the Cgr1 function for pre-ribosomal 5S RNP-rotation. Nat Commun 9(1):4094 PMID:30291245
- Kater L, et al. (2017) Visualizing the Assembly Pathway of Nucleolar Pre-60S Ribosomes. Cell 171(7):1599-1610.e14 PMID:29245012
- Wu S, et al. (2016) Diverse roles of assembly factors revealed by structures of late nuclear pre-60S ribosomes. Nature 534(7605):133-7 PMID:27251291
- Asano N, et al. (2015) Structural and functional analysis of the Rpf2-Rrs1 complex in ribosome biogenesis. Nucleic Acids Res 43(9):4746-57 PMID:25855814
- Madru C, et al. (2015) Chaperoning 5S RNA assembly. Genes Dev 29(13):1432-46 PMID:26159998
- Matsuo Y, et al. (2014) Coupled GTPase and remodelling ATPase activities form a checkpoint for ribosome export. Nature 505(7481):112-116 PMID:24240281
- Ohmayer U, et al. (2013) Studies on the assembly characteristics of large subunit ribosomal proteins in S. cerevisae. PLoS One 8(7):e68412 PMID:23874617
- Welch AZ, et al. (2013) TOR and RAS pathways regulate desiccation tolerance in Saccharomyces cerevisiae. Mol Biol Cell 24(2):115-28 PMID:23171550
- Jakovljevic J, et al. (2012) Ribosomal proteins L7 and L8 function in concert with six A₃ assembly factors to propagate assembly of domains I and II of 25S rRNA in yeast 60S ribosomal subunits. RNA 18(10):1805-22 PMID:22893726
- Talkish J, et al. (2012) Hierarchical recruitment into nascent ribosomes of assembly factors required for 27SB pre-rRNA processing in Saccharomyces cerevisiae. Nucleic Acids Res 40(17):8646-61 PMID:22735702
- Zhang J, et al. (2007) Assembly factors Rpf2 and Rrs1 recruit 5S rRNA and ribosomal proteins rpL5 and rpL11 into nascent ribosomes. Genes Dev 21(20):2580-92 PMID:17938242
- Horsey EW, et al. (2004) Role of the yeast Rrp1 protein in the dynamics of pre-ribosome maturation. RNA 10(5):813-27 PMID:15100437
- Osheim YN, et al. (2004) Pre-18S ribosomal RNA is structurally compacted into the SSU processome prior to being cleaved from nascent transcripts in Saccharomyces cerevisiae. Mol Cell 16(6):943-54 PMID:15610737
- Bogengruber E, et al. (2003) Functional analysis in yeast of the Brix protein superfamily involved in the biogenesis of ribosomes. FEMS Yeast Res 3(1):35-43 PMID:12702244
- Fatica A, et al. (2002) Ssf1p prevents premature processing of an early pre-60S ribosomal particle. Mol Cell 9(2):341-51 PMID:11864607
- Morita D, et al. (2002) Rpf2p, an evolutionarily conserved protein, interacts with ribosomal protein L11 and is essential for the processing of 27 SB Pre-rRNA to 25 S rRNA and the 60 S ribosomal subunit assembly in Saccharomyces cerevisiae. J Biol Chem 277(32):28780-6 PMID:12048200
- Wehner KA and Baserga SJ (2002) The sigma(70)-like motif: a eukaryotic RNA binding domain unique to a superfamily of proteins required for ribosome biogenesis. Mol Cell 9(2):329-39 PMID:11864606
- Zúñiga S, et al. (1999) Deletion of 24 open reading frames from chromosome XI from Saccharomyces cerevisiae and phenotypic analysis of the deletants. Gene 233(1-2):141-50 PMID:10375630
Related Literature
Genes that share literature (indicated by the purple circles) with the specified gene (indicated by yellow circle).
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Additional Literature
Papers that show experimental evidence for the gene or describe homologs in other species, but
for which the gene is not the paper’s principal focus.
No additional literature curated.
Download References (.nbib)
- LaPeruta AJ, et al. (2023) Yeast ribosome biogenesis factors Puf6 and Nog2 and ribosomal proteins uL2 and eL43 act in concert to facilitate the release of nascent large ribosomal subunits from the nucleolus. Nucleic Acids Res 51(20):11277-11290 PMID:37811893
- Lanz MC, et al. (2021) In-depth and 3-dimensional exploration of the budding yeast phosphoproteome. EMBO Rep 22(2):e51121 PMID:33491328
- Gallagher JEG (2019) Proteins and RNA sequences required for the transition of the t-Utp complex into the SSU processome. FEMS Yeast Res 19(1) PMID:30445532
- Maekawa S, et al. (2018) Overexpression of a Brix Domain-Containing Ribosome Biogenesis Factor ARPF2 and its Interactor ARRS1 Causes Morphological Changes and Lifespan Extension in Arabidopsis thaliana. Front Plant Sci 9:1177 PMID:30210511
- Tutuncuoglu B, et al. (2016) The N-terminal extension of yeast ribosomal protein L8 is involved in two major remodeling events during late nuclear stages of 60S ribosomal subunit assembly. RNA 22(9):1386-99 PMID:27390266
- Dembowski JA, et al. (2013) Has1 regulates consecutive maturation and processing steps for assembly of 60S ribosomal subunits. Nucleic Acids Res 41(16):7889-904 PMID:23788678
- Sung MK, et al. (2013) Genome-wide bimolecular fluorescence complementation analysis of SUMO interactome in yeast. Genome Res 23(4):736-46 PMID:23403034
- Sahasranaman A, et al. (2011) Assembly of Saccharomyces cerevisiae 60S ribosomal subunits: role of factors required for 27S pre-rRNA processing. EMBO J 30(19):4020-32 PMID:21926967
- Bréhélin L, et al. (2010) Assessing functional annotation transfers with inter-species conserved coexpression: application to Plasmodium falciparum. BMC Genomics 11:35 PMID:20078859
- Gallego O, et al. (2010) A systematic screen for protein-lipid interactions in Saccharomyces cerevisiae. Mol Syst Biol 6:430 PMID:21119626
- Singh RK, et al. (2010) Excess histone levels mediate cytotoxicity via multiple mechanisms. Cell Cycle 9(20):4236-44 PMID:20948314
- Breslow DK, et al. (2008) A comprehensive strategy enabling high-resolution functional analysis of the yeast genome. Nat Methods 5(8):711-8 PMID:18622397
- Lebreton A, et al. (2008) 60S ribosomal subunit assembly dynamics defined by semi-quantitative mass spectrometry of purified complexes. Nucleic Acids Res 36(15):4988-99 PMID:18658244
- Tang L, et al. (2008) Interactions among Ytm1, Erb1, and Nop7 required for assembly of the Nop7-subcomplex in yeast preribosomes. Mol Biol Cell 19(7):2844-56 PMID:18448671
- Fuentes JL, et al. (2007) In vivo functional characterization of the Saccharomyces cerevisiae 60S biogenesis GTPase Nog1. Mol Genet Genomics 278(1):105-23 PMID:17443350
- Oeffinger M, et al. (2007) Comprehensive analysis of diverse ribonucleoprotein complexes. Nat Methods 4(11):951-6 PMID:17922018
- Tsai HK, et al. (2007) Co-expression of adjacent genes in yeast cannot be simply attributed to shared regulatory system. BMC Genomics 8:352 PMID:17910772
- Swaminathan S, et al. (2006) Rck2 is required for reprogramming of ribosomes during oxidative stress. Mol Biol Cell 17(3):1472-82 PMID:16381815
- Wade CH, et al. (2006) The budding yeast rRNA and ribosome biosynthesis (RRB) regulon contains over 200 genes. Yeast 23(4):293-306 PMID:16544271
- De Marchis ML, et al. (2005) Rrp15p, a novel component of pre-ribosomal particles required for 60S ribosome subunit maturation. RNA 11(4):495-502 PMID:15769876
- Lai LC, et al. (2005) Dynamical remodeling of the transcriptome during short-term anaerobiosis in Saccharomyces cerevisiae: differential response and role of Msn2 and/or Msn4 and other factors in galactose and glucose media. Mol Cell Biol 25(10):4075-91 PMID:15870279
- Milkereit P, et al. (2003) The pre-ribosomal network. Nucleic Acids Res 31(3):799-804 PMID:12560474
Reviews
No reviews curated.
Gene Ontology Literature
Paper(s) associated with one or more GO (Gene Ontology) terms in SGD for the specified gene.
No gene ontology literature curated.
Download References (.nbib)
- Asano N, et al. (2015) Structural and functional analysis of the Rpf2-Rrs1 complex in ribosome biogenesis. Nucleic Acids Res 43(9):4746-57 PMID:25855814
- Talkish J, et al. (2012) Hierarchical recruitment into nascent ribosomes of assembly factors required for 27SB pre-rRNA processing in Saccharomyces cerevisiae. Nucleic Acids Res 40(17):8646-61 PMID:22735702
- Fuentes JL, et al. (2007) In vivo functional characterization of the Saccharomyces cerevisiae 60S biogenesis GTPase Nog1. Mol Genet Genomics 278(1):105-23 PMID:17443350
- Wehner KA and Baserga SJ (2002) The sigma(70)-like motif: a eukaryotic RNA binding domain unique to a superfamily of proteins required for ribosome biogenesis. Mol Cell 9(2):329-39 PMID:11864606
Phenotype Literature
Paper(s) associated with one or more pieces of classical phenotype evidence in SGD for the specified gene.
No phenotype literature curated.
Download References (.nbib)
- Welch AZ, et al. (2013) TOR and RAS pathways regulate desiccation tolerance in Saccharomyces cerevisiae. Mol Biol Cell 24(2):115-28 PMID:23171550
- Bogengruber E, et al. (2003) Functional analysis in yeast of the Brix protein superfamily involved in the biogenesis of ribosomes. FEMS Yeast Res 3(1):35-43 PMID:12702244
- Zúñiga S, et al. (1999) Deletion of 24 open reading frames from chromosome XI from Saccharomyces cerevisiae and phenotypic analysis of the deletants. Gene 233(1-2):141-50 PMID:10375630
Interaction Literature
Paper(s) associated with evidence supporting a physical or genetic interaction between the
specified gene and another gene in SGD. Currently, all interaction evidence is obtained from
BioGRID.
No interaction literature curated.
Download References (.nbib)
- Cruz VE, et al. (2024) The DEAD-box ATPase Dbp10/DDX54 initiates peptidyl transferase center formation during 60S ribosome biogenesis. Nat Commun 15(1):3296 PMID:38632236
- Kofler L, et al. (2024) The novel ribosome biogenesis inhibitor usnic acid blocks nucleolar pre-60S maturation. Nat Commun 15(1):7511 PMID:39209816
- Marmorale LJ, et al. (2024) Fast-evolving cofactors regulate the role of HEATR5 complexes in intra-Golgi trafficking. J Cell Biol 223(3) PMID:38240799
- Mitterer V, et al. (2024) The RNA helicase Dbp10 coordinates assembly factor association with PTC maturation during ribosome biogenesis. Nucleic Acids Res 52(4):1975-1987 PMID:38113283
- O'Brien MJ and Ansari A (2024) Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle. Biochim Biophys Acta Proteins Proteom 1872(1):140968 PMID:37863410
- Sekiguchi T, et al. (2024) Interaction between Gtr2p and ribosomal Rps31p affects the incorporation of Rps31p into ribosomes of Saccharomyces cerevisiae. Biochem Biophys Res Commun 699:149499 PMID:38281328
- Cohen N, et al. (2023) A systematic proximity ligation approach to studying protein-substrate specificity identifies the substrate spectrum of the Ssh1 translocon. EMBO J 42(11):e113385 PMID:37073826
- LaPeruta AJ, et al. (2023) Yeast ribosome biogenesis factors Puf6 and Nog2 and ribosomal proteins uL2 and eL43 act in concert to facilitate the release of nascent large ribosomal subunits from the nucleolus. Nucleic Acids Res 51(20):11277-11290 PMID:37811893
- Meyer L, et al. (2023) eIF2A represses cell wall biogenesis gene expression in Saccharomyces cerevisiae. PLoS One 18(11):e0293228 PMID:38011112
- Michaelis AC, et al. (2023) The social and structural architecture of the yeast protein interactome. Nature 624(7990):192-200 PMID:37968396
- Mitterer V, et al. (2023) Concurrent remodelling of nucleolar 60S subunit precursors by the Rea1 ATPase and Spb4 RNA helicase. Elife 12 PMID:36929751
- Ismail S, et al. (2022) Emergence of the primordial pre-60S from the 90S pre-ribosome. Cell Rep 39(1):110640 PMID:35385737
- Khan MM, et al. (2022) Oxidative stress protein Oxr1 promotes V-ATPase holoenzyme disassembly in catalytic activity-independent manner. EMBO J 41(3):e109360 PMID:34918374
- Prattes M, et al. (2022) Visualizing maturation factor extraction from the nascent ribosome by the AAA-ATPase Drg1. Nat Struct Mol Biol 29(9):942-953 PMID:36097293
- Tseng YT, et al. (2022) Translation initiation factor eIF4G1 modulates assembly of the polypeptide exit tunnel region in yeast ribosome biogenesis. J Cell Sci 135(12) PMID:35615984
- Aquino GRR, et al. (2021) The RNA helicase Dbp7 promotes domain V/VI compaction and stabilization of inter-domain interactions during early 60S assembly. Nat Commun 12(1):6152 PMID:34686661
- Su XB, et al. (2021) SUMOylation stabilizes sister kinetochore biorientation to allow timely anaphase. J Cell Biol 220(7) PMID:33929514
- Black JJ, et al. (2020) Bud23 promotes the final disassembly of the small subunit Processome in Saccharomyces cerevisiae. PLoS Genet 16(12):e1009215 PMID:33306676
- den Brave F, et al. (2020) Chaperone-Mediated Protein Disaggregation Triggers Proteolytic Clearance of Intra-nuclear Protein Inclusions. Cell Rep 31(9):107680 PMID:32492414
- Sanders E, et al. (2020) Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1. G3 (Bethesda) 10(12):4359-4368 PMID:33115720
- Wilson DM, et al. (2020) Structural insights into assembly of the ribosomal nascent polypeptide exit tunnel. Nat Commun 11(1):5111 PMID:33037216
- Bernal M, et al. (2019) The FANCM family Mph1 helicase localizes to the mitochondria and contributes to mtDNA stability. DNA Repair (Amst) 82:102684 PMID:31569000
- Gnanasundram SV, et al. (2019) At least two molecules of the RNA helicase Has1 are simultaneously present in pre-ribosomes during ribosome biogenesis. Nucleic Acids Res 47(20):10852-10864 PMID:31511893
- Rössler I, et al. (2019) Tsr4 and Nap1, two novel members of the ribosomal protein chaperOME. Nucleic Acids Res 47(13):6984-7002 PMID:31062022
- Zhou D, et al. (2019) Cryo-EM structure of an early precursor of large ribosomal subunit reveals a half-assembled intermediate. Protein Cell 10(2):120-130 PMID:29557065
- Black JJ, et al. (2018) Utp14 interaction with the small subunit processome. RNA 24(9):1214-1228 PMID:29925570
- Brüning L, et al. (2018) RNA helicases mediate structural transitions and compositional changes in pre-ribosomal complexes. Nat Commun 9(1):5383 PMID:30568249
- Miller JE, et al. (2018) Genome-Wide Mapping of Decay Factor-mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4. G3 (Bethesda) 8(1):315-330 PMID:29158339
- Shu S and Ye K (2018) Structural and functional analysis of ribosome assembly factor Efg1. Nucleic Acids Res 46(4):2096-2106 PMID:29361028
- Thoms M, et al. (2018) Suppressor mutations in Rpf2-Rrs1 or Rpl5 bypass the Cgr1 function for pre-ribosomal 5S RNP-rotation. Nat Commun 9(1):4094 PMID:30291245
- Zisser G, et al. (2018) Viewing pre-60S maturation at a minute's timescale. Nucleic Acids Res 46(6):3140-3151 PMID:29294095
- Chymkowitch P, et al. (2017) TORC1-dependent sumoylation of Rpc82 promotes RNA polymerase III assembly and activity. Proc Natl Acad Sci U S A 114(5):1039-1044 PMID:28096404
- Izawa T, et al. (2017) Cytosolic Protein Vms1 Links Ribosome Quality Control to Mitochondrial and Cellular Homeostasis. Cell 171(4):890-903.e18 PMID:29107329
- Konikkat S, et al. (2017) The assembly factor Erb1 functions in multiple remodeling events during 60S ribosomal subunit assembly in S. cerevisiae. Nucleic Acids Res 45(8):4853-4865 PMID:28115637
- Lapointe CP, et al. (2017) Architecture and dynamics of overlapped RNA regulatory networks. RNA 23(11):1636-1647 PMID:28768715
- Sturm M, et al. (2017) Interdependent action of KH domain proteins Krr1 and Dim2 drive the 40S platform assembly. Nat Commun 8(1):2213 PMID:29263326
- Buser R, et al. (2016) The Replisome-Coupled E3 Ubiquitin Ligase Rtt101Mms22 Counteracts Mrc1 Function to Tolerate Genotoxic Stress. PLoS Genet 12(2):e1005843 PMID:26849847
- Costanzo M, et al. (2016) A global genetic interaction network maps a wiring diagram of cellular function. Science 353(6306) PMID:27708008
- Manikas RG, et al. (2016) The K⁺-dependent GTPase Nug1 is implicated in the association of the helicase Dbp10 to the immature peptidyl transferase centre during ribosome maturation. Nucleic Acids Res 44(4):1800-12 PMID:26823502
- Sung MK, et al. (2016) A conserved quality-control pathway that mediates degradation of unassembled ribosomal proteins. Elife 5 PMID:27552055
- Tutuncuoglu B, et al. (2016) The N-terminal extension of yeast ribosomal protein L8 is involved in two major remodeling events during late nuclear stages of 60S ribosomal subunit assembly. RNA 22(9):1386-99 PMID:27390266
- van Leeuwen J, et al. (2016) Exploring genetic suppression interactions on a global scale. Science 354(6312) PMID:27811238
- Wu S, et al. (2016) Diverse roles of assembly factors revealed by structures of late nuclear pre-60S ribosomes. Nature 534(7605):133-7 PMID:27251291
- Kershaw CJ, et al. (2015) Integrated multi-omics analyses reveal the pleiotropic nature of the control of gene expression by Puf3p. Sci Rep 5:15518 PMID:26493364
- Kırlı K, et al. (2015) A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Elife 4 PMID:26673895
- Lapointe CP, et al. (2015) Protein-RNA networks revealed through covalent RNA marks. Nat Methods 12(12):1163-70 PMID:26524240
- Lin KW, et al. (2015) Proteomics of yeast telomerase identified Cdc48-Npl4-Ufd1 and Ufd4 as regulators of Est1 and telomere length. Nat Commun 6:8290 PMID:26365526
- Madru C, et al. (2015) Chaperoning 5S RNA assembly. Genes Dev 29(13):1432-46 PMID:26159998
- McCann KL, et al. (2015) A protein interaction map of the LSU processome. Genes Dev 29(8):862-75 PMID:25877921
- Ohmayer U, et al. (2015) Studies on the Coordination of Ribosomal Protein Assembly Events Involved in Processing and Stabilization of Yeast Early Large Ribosomal Subunit Precursors. PLoS One 10(12):e0143768 PMID:26642313
- Thoms M, et al. (2015) The Exosome Is Recruited to RNA Substrates through Specific Adaptor Proteins. Cell 162(5):1029-38 PMID:26317469
- Wan K, et al. (2015) The essential function of Rrs1 in ribosome biogenesis is conserved in budding and fission yeasts. Yeast 32(9):607-14 PMID:26122634
- Baßler J, et al. (2014) A network of assembly factors is involved in remodeling rRNA elements during preribosome maturation. J Cell Biol 207(4):481-98 PMID:25404745
- Elbaz-Alon Y, et al. (2014) A dynamic interface between vacuoles and mitochondria in yeast. Dev Cell 30(1):95-102 PMID:25026036
- Matsuo Y, et al. (2014) Coupled GTPase and remodelling ATPase activities form a checkpoint for ribosome export. Nature 505(7481):112-116 PMID:24240281
- Talkish J, et al. (2014) Ribosome assembly factors Pwp1 and Nop12 are important for folding of 5.8S rRNA during ribosome biogenesis in Saccharomyces cerevisiae. Mol Cell Biol 34(10):1863-77 PMID:24636992
- Babiano R, et al. (2013) Yeast ribosomal protein L7 and its homologue Rlp7 are simultaneously present at distinct sites on pre-60S ribosomal particles. Nucleic Acids Res 41(20):9461-70 PMID:23945946
- Dembowski JA, et al. (2013) Has1 regulates consecutive maturation and processing steps for assembly of 60S ribosomal subunits. Nucleic Acids Res 41(16):7889-904 PMID:23788678
- Hierlmeier T, et al. (2013) Rrp5p, Noc1p and Noc2p form a protein module which is part of early large ribosomal subunit precursors in S. cerevisiae. Nucleic Acids Res 41(2):1191-210 PMID:23209026
- Mitchell SF, et al. (2013) Global analysis of yeast mRNPs. Nat Struct Mol Biol 20(1):127-33 PMID:23222640
- Ohmayer U, et al. (2013) Studies on the assembly characteristics of large subunit ribosomal proteins in S. cerevisae. PLoS One 8(7):e68412 PMID:23874617
- Qiu J, et al. (2013) Coupling of mitochondrial import and export translocases by receptor-mediated supercomplex formation. Cell 154(3):596-608 PMID:23911324
- Srikumar T, et al. (2013) A global S. cerevisiae small ubiquitin-related modifier (SUMO) system interactome. Mol Syst Biol 9:668 PMID:23712011
- Sung MK, et al. (2013) Genome-wide bimolecular fluorescence complementation analysis of SUMO interactome in yeast. Genome Res 23(4):736-46 PMID:23403034
- van Pel DM, et al. (2013) Saccharomyces cerevisiae genetics predicts candidate therapeutic genetic interactions at the mammalian replication fork. G3 (Bethesda) 3(2):273-82 PMID:23390603
- Willmund F, et al. (2013) The cotranslational function of ribosome-associated Hsp70 in eukaryotic protein homeostasis. Cell 152(1-2):196-209 PMID:23332755
- Bassler J, et al. (2012) The conserved Bud20 zinc finger protein is a new component of the ribosomal 60S subunit export machinery. Mol Cell Biol 32(24):4898-912 PMID:23045392
- Jakovljevic J, et al. (2012) Ribosomal proteins L7 and L8 function in concert with six A₃ assembly factors to propagate assembly of domains I and II of 25S rRNA in yeast 60S ribosomal subunits. RNA 18(10):1805-22 PMID:22893726
- Shimoji K, et al. (2012) Ebp2 and Brx1 function cooperatively in 60S ribosomal subunit assembly in Saccharomyces cerevisiae. Nucleic Acids Res 40(10):4574-88 PMID:22319211
- Talkish J, et al. (2012) Hierarchical recruitment into nascent ribosomes of assembly factors required for 27SB pre-rRNA processing in Saccharomyces cerevisiae. Nucleic Acids Res 40(17):8646-61 PMID:22735702
- García-Gómez JJ, et al. (2011) Dynamics of the putative RNA helicase Spb4 during ribosome assembly in Saccharomyces cerevisiae. Mol Cell Biol 31(20):4156-64 PMID:21825077
- Sahasranaman A, et al. (2011) Assembly of Saccharomyces cerevisiae 60S ribosomal subunits: role of factors required for 27S pre-rRNA processing. EMBO J 30(19):4020-32 PMID:21926967
- Scherrer T, et al. (2011) Defining potentially conserved RNA regulons of homologous zinc-finger RNA-binding proteins. Genome Biol 12(1):R3 PMID:21232131
- Stirling PC, et al. (2011) The complete spectrum of yeast chromosome instability genes identifies candidate CIN cancer genes and functional roles for ASTRA complex components. PLoS Genet 7(4):e1002057 PMID:21552543
- Breitkreutz A, et al. (2010) A global protein kinase and phosphatase interaction network in yeast. Science 328(5981):1043-6 PMID:20489023
- Kemmler S, et al. (2009) Yvh1 is required for a late maturation step in the 60S biogenesis pathway. J Cell Biol 186(6):863-80 PMID:19797079
- Oeffinger M, et al. (2009) Rrp17p is a eukaryotic exonuclease required for 5' end processing of Pre-60S ribosomal RNA. Mol Cell 36(5):768-81 PMID:20005841
- Kressler D, et al. (2008) The AAA ATPase Rix7 powers progression of ribosome biogenesis by stripping Nsa1 from pre-60S particles. J Cell Biol 181(6):935-44 PMID:18559667
- Tang L, et al. (2008) Interactions among Ytm1, Erb1, and Nop7 required for assembly of the Nop7-subcomplex in yeast preribosomes. Mol Biol Cell 19(7):2844-56 PMID:18448671
- Oeffinger M, et al. (2007) Comprehensive analysis of diverse ribonucleoprotein complexes. Nat Methods 4(11):951-6 PMID:17922018
- Zhang J, et al. (2007) Assembly factors Rpf2 and Rrs1 recruit 5S rRNA and ribosomal proteins rpL5 and rpL11 into nascent ribosomes. Genes Dev 21(20):2580-92 PMID:17938242
- Gavin AC, et al. (2006) Proteome survey reveals modularity of the yeast cell machinery. Nature 440(7084):631-6 PMID:16429126
- Krogan NJ, et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 440(7084):637-43 PMID:16554755
- De Marchis ML, et al. (2005) Rrp15p, a novel component of pre-ribosomal particles required for 60S ribosome subunit maturation. RNA 11(4):495-502 PMID:15769876
- Miles TD, et al. (2005) Ytm1, Nop7, and Erb1 form a complex necessary for maturation of yeast 66S preribosomes. Mol Cell Biol 25(23):10419-32 PMID:16287855
- Horsey EW, et al. (2004) Role of the yeast Rrp1 protein in the dynamics of pre-ribosome maturation. RNA 10(5):813-27 PMID:15100437
- Bogengruber E, et al. (2003) Functional analysis in yeast of the Brix protein superfamily involved in the biogenesis of ribosomes. FEMS Yeast Res 3(1):35-43 PMID:12702244
- Saveanu C, et al. (2003) Sequential protein association with nascent 60S ribosomal particles. Mol Cell Biol 23(13):4449-60 PMID:12808088
- Du YC and Stillman B (2002) Yph1p, an ORC-interacting protein: potential links between cell proliferation control, DNA replication, and ribosome biogenesis. Cell 109(7):835-48 PMID:12110181
- Fatica A, et al. (2002) Ssf1p prevents premature processing of an early pre-60S ribosomal particle. Mol Cell 9(2):341-51 PMID:11864607
- Gavin AC, et al. (2002) Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415(6868):141-7 PMID:11805826
- Ho Y, et al. (2002) Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature 415(6868):180-3 PMID:11805837
- Morita D, et al. (2002) Rpf2p, an evolutionarily conserved protein, interacts with ribosomal protein L11 and is essential for the processing of 27 SB Pre-rRNA to 25 S rRNA and the 60 S ribosomal subunit assembly in Saccharomyces cerevisiae. J Biol Chem 277(32):28780-6 PMID:12048200
- Nissan TA, et al. (2002) 60S pre-ribosome formation viewed from assembly in the nucleolus until export to the cytoplasm. EMBO J 21(20):5539-47 PMID:12374754
Regulation Literature
Paper(s) associated with one or more pieces of regulation evidence in SGD, as found on the
Regulation page.
No regulation literature curated.
Post-translational Modifications Literature
Paper(s) associated with one or more pieces of post-translational modifications evidence in SGD.
No post-translational modifications literature curated.
Functional Complementation Annotations Literature
Paper(s) associated with one or more pieces of functional complementation annotations evidence in SGD.
No functional complementation annotations literature curated.
High-Throughput Literature
Paper(s) associated with one or more pieces of high-throughput evidence in SGD.
No high-throughput literature curated.
Download References (.nbib)
- Songdech P, et al. (2024) Increased production of isobutanol from xylose through metabolic engineering of Saccharomyces cerevisiae overexpressing transcription factor Znf1 and exogenous genes. FEMS Yeast Res 24 PMID:38331422
- Forster DT, et al. (2022) BIONIC: biological network integration using convolutions. Nat Methods 19(10):1250-1261 PMID:36192463
- Chen X, et al. (2020) FMN reduces Amyloid-β toxicity in yeast by regulating redox status and cellular metabolism. Nat Commun 11(1):867 PMID:32054832
- Fröhlich F, et al. (2015) The GARP complex is required for cellular sphingolipid homeostasis. Elife 4 PMID:26357016
- Pir P, et al. (2012) The genetic control of growth rate: a systems biology study in yeast. BMC Syst Biol 6:4 PMID:22244311
- Venters BJ, et al. (2011) A comprehensive genomic binding map of gene and chromatin regulatory proteins in Saccharomyces. Mol Cell 41(4):480-92 PMID:21329885
- Ben-Aroya S, et al. (2008) Toward a comprehensive temperature-sensitive mutant repository of the essential genes of Saccharomyces cerevisiae. Mol Cell 30(2):248-58 PMID:18439903
- Breslow DK, et al. (2008) A comprehensive strategy enabling high-resolution functional analysis of the yeast genome. Nat Methods 5(8):711-8 PMID:18622397
- Cipollina C, et al. (2008) Saccharomyces cerevisiae SFP1: at the crossroads of central metabolism and ribosome biogenesis. Microbiology (Reading) 154(Pt 6):1686-1699 PMID:18524923
- Sopko R, et al. (2006) Mapping pathways and phenotypes by systematic gene overexpression. Mol Cell 21(3):319-30 PMID:16455487
- Lum PY, et al. (2004) Discovering modes of action for therapeutic compounds using a genome-wide screen of yeast heterozygotes. Cell 116(1):121-37 PMID:14718172
- Giaever G, et al. (2002) Functional profiling of the Saccharomyces cerevisiae genome. Nature 418(6896):387-91 PMID:12140549