Phenotype Help

VTH1 / YIL173W Phenotype

Phenotype annotations for a gene are curated single mutant phenotypes that require an observable (e.g., "cell shape"), a qualifier (e.g., "abnormal"), a mutant type (e.g., null), strain background, and a reference. In addition, annotations are classified as classical genetics or high-throughput (e.g., large scale survey, systematic mutation set). Whenever possible, allele information and additional details are provided.



Annotations

A phenotype is defined as an observable (e.g., apoptosis) and a qualifier (e.g., increased). There may be more than one row with the same phenotype if that phenotype was observed in separate studies or in different conditions, strains, alleles, etc.

16 entries for 11 phenotypes


Increase the total number of rows showing on this page using the pull-down located below the table, or use the page scroll at the table's top right to browse through the table's pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table; click on the small "i" buttons located within a cell for an annotation to view further details.

PhenotypeExperiment TypeMutant InformationStrain BackgroundChemicalDetailsReference
competitive fitness: increased
competitive growth

fitness profiling using complete deletion alleles

null
Allele: vth1-Δ
S288CMedia: minimal medium
Details: Relative fitness score: 1.02
Breslow DK, et al. (2008) PMID:18622397
haploinsufficient
heterozygous diploid, competitive growth

genome-wide fitness profiling

null
Allele: vth1-Δ
S288CMedia: turbidostat growth in FPM medium
Details: Relative growth score: -0.0057
Pir P, et al. (2012) PMID:22244311
heat sensitivity: decreased
systematic mutation set

high throughput heat ramp cell death assay

null
Allele: vth1-Δ
S288CTemperature: elevated temperature
Details: ramp temperature from ambient to 30 deg C immediately, hold 1 min at 30 deg C, ramp temperature from 30 deg C to 62 deg C over 20 min, return to ambient
Teng X, et al. (2011) PMID:21814286
mitotic recombination: decreased
systematic mutation set null
Allele: vth1-Δ
S288CDetails: spontaneous direct-repeat hypo-recombination identified using a high-throughput replica-pinning technique; recombination frequency of less than 33% compared to 56% for wt
Novarina D, et al. (2020) PMID:32265288
oxidative stress resistance: decreased
homozygous diploid, competitive growthnull
Allele: vth1-Δ
S288C3 mM hydrogen peroxideBrown JA, et al. (2006) PMID:16738548
resistance to chemicals: decreased
heterozygous diploid, systematic mutation setnull
Allele: vth1-Δ
S288C mercury dichlorideHoepfner D, et al. (2014) PMID:24360837
resistance to chemicals: decreased
heterozygous diploid, systematic mutation setnull
Allele: vth1-Δ
S288Cderivative myriocinHoepfner D, et al. (2014) PMID:24360837
resistance to chemicals: decreased
heterozygous diploid, systematic mutation setnull
Allele: vth1-Δ
S288C chondramide derivativeHoepfner D, et al. (2014) PMID:24360837
resistance to chemicals: decreased
heterozygous diploid, systematic mutation setnull
Allele: vth1-Δ
S288C SDZ 90-215Hoepfner D, et al. (2014) PMID:24360837
silencing: decreased
systematic mutation set null
Allele: vth1-Δ
S288CDetails: decreased silencing at the silent mating type locus HMR based on expression of integrated URA3; confirmed using a Bioscreen mini-liquid culture assay
Liu Q, et al. (2020) PMID:32469861
Showing 1 to 10 of 16 entries

Shared Phenotypes

This diagram displays phenotype observables (purple squares) that are shared between the given gene (yellow circle) and other genes (gray circles) based on the number of phenotype observables shared (adjustable using the slider at the bottom).


Reset

Click on a gene or phenotype observable name to go to its specific page within SGD; drag any of the gene or observable objects around within the visualization for easier viewing; click “Reset” to automatically redraw the diagram; filter the genes that share observable terms with the given gene by the number of terms they share by clicking anywhere on the slider bar or dragging the tab to the desired filter number.


Resources