Phenotype Help

OYE2 / YHR179W Phenotype

Phenotype annotations for a gene are curated single mutant phenotypes that require an observable (e.g., "cell shape"), a qualifier (e.g., "abnormal"), a mutant type (e.g., null), strain background, and a reference. In addition, annotations are classified as classical genetics or high-throughput (e.g., large scale survey, systematic mutation set). Whenever possible, allele information and additional details are provided.



Annotations

A phenotype is defined as an observable (e.g., apoptosis) and a qualifier (e.g., increased). There may be more than one row with the same phenotype if that phenotype was observed in separate studies or in different conditions, strains, alleles, etc.

30 entries for 15 phenotypes


Increase the total number of rows showing on this page using the pull-down located below the table, or use the page scroll at the table's top right to browse through the table's pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table; click on the small "i" buttons located within a cell for an annotation to view further details.

PhenotypeExperiment TypeMutant InformationStrain BackgroundChemicalDetailsReference
anaerobic growth: decreased
systematic mutation setnull
Allele: oye2-Δ
S288CTreatment: anoxia
Details: poor growth as indicated by measurements of colony size
Samanfar B, et al. (2013) PMID:23467670
apoptosis: decreased
classical geneticsoverexpressionS288CDetails: on exposure to hydrogen peroxide
Odat O, et al. (2007) PMID:17897954
auxotrophy
homozygous diploid, systematic mutation setnull
Allele: oye2-Δ
S288C myo-inositolVilla-García MJ, et al. (2011) PMID:21136082
chemical compound accumulation: decreased
classical geneticsoverexpressionS288C reactive oxygen speciesOdat O, et al. (2007) PMID:17897954
competitive fitness: decreased
competitive growth

fitness profiling using complete deletion alleles

null
Allele: oye2-Δ
S288CMedia: minimal medium
Details: Relative fitness score: 0.995
Breslow DK, et al. (2008) PMID:18622397
competitive fitness: decreased
systematic mutation setnull
Allele: oye2-Δ
S288CMedia: glycerol medium, YPG
Qian W, et al. (2012) PMID:23103169
competitive fitness: decreased
systematic mutation setnull
Allele: oye2-Δ
S288CMedia: YPD
Qian W, et al. (2012) PMID:23103169
competitive fitness: increased
homozygous diploid, competitive growthnull
Allele: oye2-Δ
S288CTreatment: conditions that mimic Phase II of a batch fermentation, equivalent to ~22 hours after inoculation of a batch fermentation
Novo M, et al. (2013) PMID:24040173
desiccation resistance: decreased
homozygous diploid, systematic mutation setnull
Allele: oye2-Δ
S288CTreatment: pooled mutants subject to three cycles of growth to post-diauxic phase followed by desiccation and regrowth
Details: 2-fold or greater decreased survival after the treatment
Ratnakumar S, et al. (2011) PMID:20963216
haploinsufficient
heterozygous diploid, competitive growth

genome-wide fitness profiling

null
Allele: oye2-Δ
S288CMedia: turbidostat growth in FPM medium
Details: Relative growth score: -0.004
Pir P, et al. (2012) PMID:22244311
Showing 1 to 10 of 30 entries

Shared Phenotypes

This diagram displays phenotype observables (purple squares) that are shared between the given gene (yellow circle) and other genes (gray circles) based on the number of phenotype observables shared (adjustable using the slider at the bottom).


Reset

Click on a gene or phenotype observable name to go to its specific page within SGD; drag any of the gene or observable objects around within the visualization for easier viewing; click “Reset” to automatically redraw the diagram; filter the genes that share observable terms with the given gene by the number of terms they share by clicking anywhere on the slider bar or dragging the tab to the desired filter number.


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