Phenotype Help

VMA22 / YHR060W Phenotype

Phenotype annotations for a gene are curated single mutant phenotypes that require an observable (e.g., "cell shape"), a qualifier (e.g., "abnormal"), a mutant type (e.g., null), strain background, and a reference. In addition, annotations are classified as classical genetics or high-throughput (e.g., large scale survey, systematic mutation set). Whenever possible, allele information and additional details are provided.


Summary
VMA22/YHR060W is a non-essential gene; null mutants are viable but exhibit a wide range of phenotypic changes including decreased metal resistance, increased protein/peptide accumulation, decreased resistance to chemicals, abnormal vacuolar morphology, decreased acid and alkaline pH resistance, auxotrophy, increased duration of cell cycle progression in the G1 phase, decreased chronological lifespan, decreased competitive fitness, increased heat sensitivity, abnormal lipid particle morphology, abnormal mitochondrial morphology, decreased oxidative stress resistance, decreased resistance to enzymatic treatment, absent respiratory growth, increased toxin resistance, decreased utilization of carbon and iron sources, and decreased vegetative growth.

Annotations

A phenotype is defined as an observable (e.g., apoptosis) and a qualifier (e.g., increased). There may be more than one row with the same phenotype if that phenotype was observed in separate studies or in different conditions, strains, alleles, etc.

110 entries for 27 phenotypes


Increase the total number of rows showing on this page using the pull-down located below the table, or use the page scroll at the table's top right to browse through the table's pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table; click on the small "i" buttons located within a cell for an annotation to view further details.

PhenotypeExperiment TypeMutant InformationStrain BackgroundChemicalDetailsReference
acid pH resistance: decreased
systematic mutation setnull
Allele: vma22-Δ
S288C20 mM propionic acidMira NP, et al. (2009) PMID:19220866
acid pH resistance: decreased
systematic mutation setnull
Allele: vma22-Δ
S288C0.1-0.4% boric acidSchmidt M, et al. (2012) PMID:22902726
alkaline pH resistance: decreased
systematic mutation setnull
Allele: vma22-Δ
S288CMedia: pH 6.8 to pH 7.5, in steps of 0.1-0.2 pH units
Serrano R, et al. (2004) PMID:14993228
auxotrophy
homozygous diploid, systematic mutation setnull
Allele: vma22-Δ
S288C myo-inositolVilla-García MJ, et al. (2011) PMID:21136082
cell cycle progression in G1 phase: increased duration
homozygous diploid, systematic mutation setnull
Allele: vma22-Δ
S288CDetails: percentage of G1 cells greater than two standard deviations (41.57%) above wild type when assayed by FACS
Hoose SA, et al. (2012) PMID:22438835
chemical compound accumulation: abnormal
systematic mutation setnull
Allele: vma22-Δ
S288C polyphosphateFreimoser FM, et al. (2006) PMID:17107617
chemical compound accumulation: decreased
systematic mutation setnull
Allele: vma22-Δ
S288C arginineCooper SJ, et al. (2010) PMID:20610602
chemical compound accumulation: decreased
systematic mutation setnull
Allele: vma22-Δ
S288C protonMedia: external pH 5.0
Orij R, et al. (2012) PMID:23021432
chemical compound accumulation: decreased
systematic mutation setnull
Allele: vma22-Δ
S288C protonMedia: nonfermentable carbon source, ethanol/glycerol
Orij R, et al. (2012) PMID:23021432
chemical compound accumulation: decreased
systematic mutation setnull
Allele: vma22-Δ
S288C cobalt cationYu D, et al. (2012) PMID:23151179
Showing 1 to 10 of 110 entries

Shared Phenotypes

This diagram displays phenotype observables (purple squares) that are shared between the given gene (yellow circle) and other genes (gray circles) based on the number of phenotype observables shared (adjustable using the slider at the bottom).


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Click on a gene or phenotype observable name to go to its specific page within SGD; drag any of the gene or observable objects around within the visualization for easier viewing; click “Reset” to automatically redraw the diagram; filter the genes that share observable terms with the given gene by the number of terms they share by clicking anywhere on the slider bar or dragging the tab to the desired filter number.


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