Literature Help
SMB1 / YER029C Literature
All manually curated literature for the specified gene, organized by relevance to the gene and by
association with specific annotations to the gene in SGD. SGD gathers references via a PubMed search for
papers whose titles or abstracts contain “yeast” or “cerevisiae;” these papers are reviewed manually and
linked to relevant genes and literature topics by SGD curators.
- Unique References
- 124
- Aliases
-
SmB
2
15
,
Sm B
3
Primary Literature
Literature that either focuses on the gene or contains information about function, biological role,
cellular location, phenotype, regulation, structure, or disease homologs in other species for the gene
or gene product.
No primary literature curated.
Download References (.nbib)
- Neumann H, et al. (2023) Ratcheted transport and sequential assembly of the yeast telomerase RNP. Cell Rep 42(12):113565 PMID:38096049
- Hirsch AG, et al. (2021) Unraveling the stepwise maturation of the yeast telomerase including a Cse1 and Mtr10 mediated quality control checkpoint. Sci Rep 11(1):22174 PMID:34773052
- Zhang KL, et al. (2021) Phylogenetic Comparison and Splicing Analysis of the U1 snRNP-specific Protein U1C in Eukaryotes. Front Mol Biosci 8:696319 PMID:34568424
- Wan R, et al. (2019) Structures of the Catalytically Activated Yeast Spliceosome Reveal the Mechanism of Branching. Cell 177(2):339-351.e13 PMID:30879786
- Bai R, et al. (2018) Structures of the fully assembled Saccharomyces cerevisiae spliceosome before activation. Science 360(6396):1423-1429 PMID:29794219
- Fica SM, et al. (2017) Structure of a spliceosome remodelled for exon ligation. Nature 542(7641):377-380 PMID:28076345
- Li X, et al. (2017) CryoEM structure of Saccharomyces cerevisiae U1 snRNP offers insight into alternative splicing. Nat Commun 8(1):1035 PMID:29051543
- Liu S, et al. (2017) Structure of the yeast spliceosomal postcatalytic P complex. Science 358(6368):1278-1283 PMID:29146870
- Schwer B, et al. (2017) Will the circle be unbroken: specific mutations in the yeast Sm protein ring expose a requirement for assembly factor Brr1, a homolog of Gemin2. RNA 23(3):420-430 PMID:27974620
- Didychuk AL, et al. (2016) Structural requirements for protein-catalyzed annealing of U4 and U6 RNAs during di-snRNP assembly. Nucleic Acids Res 44(3):1398-410 PMID:26673715
- Nguyen THD, et al. (2016) Cryo-EM structure of the yeast U4/U6.U5 tri-snRNP at 3.7 Å resolution. Nature 530(7590):298-302 PMID:26829225
- Wan R, et al. (2016) The 3.8 Å structure of the U4/U6.U5 tri-snRNP: Insights into spliceosome assembly and catalysis. Science 351(6272):466-75 PMID:26743623
- Yan C, et al. (2016) Structure of a yeast activated spliceosome at 3.5 Å resolution. Science 353(6302):904-11 PMID:27445306
- Lin KW, et al. (2015) Proteomics of yeast telomerase identified Cdc48-Npl4-Ufd1 and Ufd4 as regulators of Est1 and telomere length. Nat Commun 6:8290 PMID:26365526
- Nguyen TH, et al. (2015) The architecture of the spliceosomal U4/U6.U5 tri-snRNP. Nature 523(7558):47-52 PMID:26106855
- Schwer B and Shuman S (2015) Structure-function analysis and genetic interactions of the Yhc1, SmD3, SmB, and Snp1 subunits of yeast U1 snRNP and genetic interactions of SmD3 with U2 snRNP subunit Lea1. RNA 21(6):1173-86 PMID:25897024
- Tardiff DF and Rosbash M (2006) Arrested yeast splicing complexes indicate stepwise snRNP recruitment during in vivo spliceosome assembly. RNA 12(6):968-79 PMID:16618970
- Ohi MD, et al. (2002) Proteomics analysis reveals stable multiprotein complexes in both fission and budding yeasts containing Myb-related Cdc5p/Cef1p, novel pre-mRNA splicing factors, and snRNAs. Mol Cell Biol 22(7):2011-24 PMID:11884590
- Gottschalk A, et al. (2001) The yeast U5 snRNP coisolated with the U1 snRNP has an unexpected protein composition and includes the splicing factor Aar2p. RNA 7(11):1554-65 PMID:11720285
- Stevens SW, et al. (2001) Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae. RNA 7(11):1543-53 PMID:11720284
- Walke S, et al. (2001) Stoichiometry of the Sm proteins in yeast spliceosomal snRNPs supports the heptamer ring model of the core domain. J Mol Biol 308(1):49-58 PMID:11302706
- Zhang D, et al. (2001) A biochemical function for the Sm complex. Mol Cell 7(2):319-29 PMID:11239461
- Bordonné R (2000) Functional characterization of nuclear localization signals in yeast Sm proteins. Mol Cell Biol 20(21):7943-54 PMID:11027265
- Gottschalk A, et al. (1999) Identification by mass spectrometry and functional analysis of novel proteins of the yeast [U4/U6.U5] tri-snRNP. EMBO J 18(16):4535-48 PMID:10449419
- Salgado-Garrido J, et al. (1999) Sm and Sm-like proteins assemble in two related complexes of deep evolutionary origin. EMBO J 18(12):3451-62 PMID:10369684
- Stevens SW and Abelson J (1999) Purification of the yeast U4/U6.U5 small nuclear ribonucleoprotein particle and identification of its proteins. Proc Natl Acad Sci U S A 96(13):7226-31 PMID:10377396
- Zhang D and Rosbash M (1999) Identification of eight proteins that cross-link to pre-mRNA in the yeast commitment complex. Genes Dev 13(5):581-92 PMID:10072386
- Gottschalk A, et al. (1998) A comprehensive biochemical and genetic analysis of the yeast U1 snRNP reveals five novel proteins. RNA 4(4):374-93 PMID:9630245
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Additional Literature
Papers that show experimental evidence for the gene or describe homologs in other species, but
for which the gene is not the paper’s principal focus.
No additional literature curated.
Download References (.nbib)
- Basu A, et al. (2021) Measuring DNA mechanics on the genome scale. Nature 589(7842):462-467 PMID:33328628
- Lanz MC, et al. (2021) In-depth and 3-dimensional exploration of the budding yeast phosphoproteome. EMBO Rep 22(2):e51121 PMID:33491328
- Becker D, et al. (2019) Nuclear Pre-snRNA Export Is an Essential Quality Assurance Mechanism for Functional Spliceosomes. Cell Rep 27(11):3199-3214.e3 PMID:31189105
- Schikora-Tamarit MÀ, et al. (2018) Promoter Activity Buffering Reduces the Fitness Cost of Misregulation. Cell Rep 24(3):755-765 PMID:30021171
- Bertram K, et al. (2017) Cryo-EM Structure of a Pre-catalytic Human Spliceosome Primed for Activation. Cell 170(4):701-713.e11 PMID:28781166
- Schwer B, et al. (2016) Structure-function analysis and genetic interactions of the SmG, SmE, and SmF subunits of the yeast Sm protein ring. RNA 22(9):1320-8 PMID:27417296
- Hérissant L, et al. (2014) H2B ubiquitylation modulates spliceosome assembly and function in budding yeast. Biol Cell 106(4):126-38 PMID:24476359
- Zhang C, et al. (2014) Only a subset of the PAB1-mRNP proteome is present in mRNA translation complexes. Protein Sci 23(8):1036-49 PMID:24838188
- Coelho Ribeiro Mde L, et al. (2013) Malleable ribonucleoprotein machine: protein intrinsic disorder in the Saccharomyces cerevisiae spliceosome. PeerJ 1:e2 PMID:23638354
- Li X, et al. (2013) Comprehensive in vivo RNA-binding site analyses reveal a role of Prp8 in spliceosomal assembly. Nucleic Acids Res 41(6):3805-18 PMID:23393194
- Shcherbakova I, et al. (2013) Alternative spliceosome assembly pathways revealed by single-molecule fluorescence microscopy. Cell Rep 5(1):151-65 PMID:24075986
- Chang J, et al. (2012) Structure-function analysis and genetic interactions of the yeast branchpoint binding protein Msl5. Nucleic Acids Res 40(10):4539-52 PMID:22287628
- Ren L, et al. (2011) Systematic two-hybrid and comparative proteomic analyses reveal novel yeast pre-mRNA splicing factors connected to Prp19. PLoS One 6(2):e16719 PMID:21386897
- Schwer B, et al. (2011) Composition of yeast snRNPs and snoRNPs in the absence of trimethylguanosine caps reveals nuclear cap binding protein as a gained U1 component implicated in the cold-sensitivity of tgs1Δ cells. Nucleic Acids Res 39(15):6715-28 PMID:21558325
- Yu B, et al. (2011) Spliceosomal genes in the D. discoideum genome: a comparison with those in H. sapiens, D. melanogaster, A. thaliana and S. cerevisiae. Protein Cell 2(5):395-409 PMID:21667333
- Alexander RD, et al. (2010) Splicing-dependent RNA polymerase pausing in yeast. Mol Cell 40(4):582-93 PMID:21095588
- Taoka M, et al. (2010) In-gel digestion for mass spectrometric characterization of RNA from fluorescently stained polyacrylamide gels. Anal Chem 82(18):7795-803 PMID:20795640
- Fabrizio P, et al. (2009) The evolutionarily conserved core design of the catalytic activation step of the yeast spliceosome. Mol Cell 36(4):593-608 PMID:19941820
- Khanna M, et al. (2009) A systematic characterization of Cwc21, the yeast ortholog of the human spliceosomal protein SRm300. RNA 15(12):2174-85 PMID:19789211
- Warkocki Z, et al. (2009) Reconstitution of both steps of Saccharomyces cerevisiae splicing with purified spliceosomal components. Nat Struct Mol Biol 16(12):1237-43 PMID:19935684
- Bellare P, et al. (2008) A role for ubiquitin in the spliceosome assembly pathway. Nat Struct Mol Biol 15(5):444-51 PMID:18425143
- Häcker I, et al. (2008) Localization of Prp8, Brr2, Snu114 and U4/U6 proteins in the yeast tri-snRNP by electron microscopy. Nat Struct Mol Biol 15(11):1206-12 PMID:18953335
- Tseng CK and Cheng SC (2008) Both catalytic steps of nuclear pre-mRNA splicing are reversible. Science 320(5884):1782-4 PMID:18583613
- Oeffinger M, et al. (2007) Comprehensive analysis of diverse ribonucleoprotein complexes. Nat Methods 4(11):951-6 PMID:17922018
- Bowers HA, et al. (2006) Discriminatory RNP remodeling by the DEAD-box protein DED1. RNA 12(5):903-12 PMID:16556937
- Tanaka F, et al. (2006) Functional genomic analysis of commercial baker's yeast during initial stages of model dough-fermentation. Food Microbiol 23(8):717-28 PMID:16943074
- Lebaron S, et al. (2005) The splicing ATPase prp43p is a component of multiple preribosomal particles. Mol Cell Biol 25(21):9269-82 PMID:16227579
- Kotovic KM, et al. (2003) Cotranscriptional recruitment of the U1 snRNP to intron-containing genes in yeast. Mol Cell Biol 23(16):5768-79 PMID:12897147
- Wang Q, et al. (2003) The Clf1p splicing factor promotes spliceosome assembly through N-terminal tetratricopeptide repeat contacts. J Biol Chem 278(10):7875-83 PMID:12509417
- Jurica MS, et al. (2002) Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis. RNA 8(4):426-39 PMID:11991638
- Mouaikel J, et al. (2002) Hypermethylation of the cap structure of both yeast snRNAs and snoRNAs requires a conserved methyltransferase that is localized to the nucleolus. Mol Cell 9(4):891-901 PMID:11983179
- Mougin A, et al. (2002) Direct probing of RNA structure and RNA-protein interactions in purified HeLa cell's and yeast spliceosomal U4/U6.U5 tri-snRNP particles. J Mol Biol 317(5):631-49 PMID:11955014
- Stevens SW, et al. (2002) Composition and functional characterization of the yeast spliceosomal penta-snRNP. Mol Cell 9(1):31-44 PMID:11804584
- Käufer NF and Potashkin J (2000) Analysis of the splicing machinery in fission yeast: a comparison with budding yeast and mammals. Nucleic Acids Res 28(16):3003-10 PMID:10931913
- Palfi Z, et al. (2000) The spliceosomal snRNP core complex of Trypanosoma brucei: cloning and functional analysis reveals seven Sm protein constituents. Proc Natl Acad Sci U S A 97(16):8967-72 PMID:10900267
- Kambach C, et al. (1999) Crystal structures of two Sm protein complexes and their implications for the assembly of the spliceosomal snRNPs. Cell 96(3):375-87 PMID:10025403
- Sleeman JE and Lamond AI (1999) Newly assembled snRNPs associate with coiled bodies before speckles, suggesting a nuclear snRNP maturation pathway. Curr Biol 9(19):1065-74 PMID:10531003
- Camasses A, et al. (1998) Interactions within the yeast Sm core complex: from proteins to amino acids. Mol Cell Biol 18(4):1956-66 PMID:9528767
- Neubauer G, et al. (1997) Identification of the proteins of the yeast U1 small nuclear ribonucleoprotein complex by mass spectrometry. Proc Natl Acad Sci U S A 94(2):385-90 PMID:9012791
Reviews
No reviews curated.
Download References (.nbib)
- Davis JA and Chakrabarti K (2024) Molecular and Evolutionary Analysis of RNA-Protein Interactions in Telomerase Regulation. Noncoding RNA 10(3) PMID:38921833
- Zappulla DC (2020) Yeast Telomerase RNA Flexibly Scaffolds Protein Subunits: Results and Repercussions. Molecules 25(12) PMID:32545864
- Galej WP (2018) Structural studies of the spliceosome: past, present and future perspectives. Biochem Soc Trans 46(6):1407-1422 PMID:30420411
- Becerra S, et al. (2016) Prp40 and early events in splice site definition. Wiley Interdiscip Rev RNA 7(1):17-32 PMID:26494226
- Wan R, et al. (2016) Structure of a yeast catalytic step I spliceosome at 3.4 Å resolution. Science 353(6302):895-904 PMID:27445308
- Chen HC and Cheng SC (2012) Functional roles of protein splicing factors. Biosci Rep 32(4):345-59 PMID:22762203
- Will CL and Lührmann R (2011) Spliceosome structure and function. Cold Spring Harb Perspect Biol 3(7) PMID:21441581
- Bergkessel M, et al. (2009) SnapShot: Formation of mRNPs. Cell 136(4):794, 794.e1 PMID:19239896
- Wahl MC, et al. (2009) The spliceosome: design principles of a dynamic RNP machine. Cell 136(4):701-18 PMID:19239890
- Beggs JD (2005) Lsm proteins and RNA processing. Biochem Soc Trans 33(Pt 3):433-8 PMID:15916535
- Burge CB et al. (1999) "Splicing of precursors to mRNAs by the spliceosomes." Pp. 525-560 in The RNA World, Second Edition, edited by Gesteland RF, Cech TR, Atkins JF. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press
- Kambach C, et al. (1999) Structure and assembly of the spliceosomal small nuclear ribonucleoprotein particles. Curr Opin Struct Biol 9(2):222-30 PMID:10322216
- Guthrie C (1991) Messenger RNA splicing in yeast: clues to why the spliceosome is a ribonucleoprotein. Science 253(5016):157-63 PMID:1853200
Gene Ontology Literature
Paper(s) associated with one or more GO (Gene Ontology) terms in SGD for the specified gene.
No gene ontology literature curated.
Download References (.nbib)
- Schwer B and Shuman S (2015) Structure-function analysis and genetic interactions of the Yhc1, SmD3, SmB, and Snp1 subunits of yeast U1 snRNP and genetic interactions of SmD3 with U2 snRNP subunit Lea1. RNA 21(6):1173-86 PMID:25897024
- Tardiff DF and Rosbash M (2006) Arrested yeast splicing complexes indicate stepwise snRNP recruitment during in vivo spliceosome assembly. RNA 12(6):968-79 PMID:16618970
- Gottschalk A, et al. (2001) The yeast U5 snRNP coisolated with the U1 snRNP has an unexpected protein composition and includes the splicing factor Aar2p. RNA 7(11):1554-65 PMID:11720285
- Stevens SW, et al. (2001) Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae. RNA 7(11):1543-53 PMID:11720284
- Gottschalk A, et al. (1999) Identification by mass spectrometry and functional analysis of novel proteins of the yeast [U4/U6.U5] tri-snRNP. EMBO J 18(16):4535-48 PMID:10449419
- Stevens SW and Abelson J (1999) Purification of the yeast U4/U6.U5 small nuclear ribonucleoprotein particle and identification of its proteins. Proc Natl Acad Sci U S A 96(13):7226-31 PMID:10377396
- Gottschalk A, et al. (1998) A comprehensive biochemical and genetic analysis of the yeast U1 snRNP reveals five novel proteins. RNA 4(4):374-93 PMID:9630245
Interaction Literature
Paper(s) associated with evidence supporting a physical or genetic interaction between the
specified gene and another gene in SGD. Currently, all interaction evidence is obtained from
BioGRID.
No interaction literature curated.
Download References (.nbib)
- Kociemba J, et al. (2024) Multi-signal regulation of the GSK-3β homolog Rim11 controls meiosis entry in budding yeast. EMBO J 43(15):3256-3286 PMID:38886580
- Marmorale LJ, et al. (2024) Fast-evolving cofactors regulate the role of HEATR5 complexes in intra-Golgi trafficking. J Cell Biol 223(3) PMID:38240799
- O'Brien MJ and Ansari A (2024) Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle. Biochim Biophys Acta Proteins Proteom 1872(1):140968 PMID:37863410
- Meyer L, et al. (2023) eIF2A represses cell wall biogenesis gene expression in Saccharomyces cerevisiae. PLoS One 18(11):e0293228 PMID:38011112
- Michaelis AC, et al. (2023) The social and structural architecture of the yeast protein interactome. Nature 624(7990):192-200 PMID:37968396
- Neumann H, et al. (2023) Ratcheted transport and sequential assembly of the yeast telomerase RNP. Cell Rep 42(12):113565 PMID:38096049
- Gavade JN, et al. (2022) Identification of 14-3-3 proteins, Polo kinase, and RNA-binding protein Pes4 as key regulators of meiotic commitment in budding yeast. Curr Biol 32(7):1534-1547.e9 PMID:35240051
- Hirsch AG, et al. (2021) Unraveling the stepwise maturation of the yeast telomerase including a Cse1 and Mtr10 mediated quality control checkpoint. Sci Rep 11(1):22174 PMID:34773052
- Uzun Ü, et al. (2021) Spt4 facilitates the movement of RNA polymerase II through the +2 nucleosomal barrier. Cell Rep 36(13):109755 PMID:34592154
- Zhang Z, et al. (2021) Structural insights into how Prp5 proofreads the pre-mRNA branch site. Nature 596(7871):296-300 PMID:34349264
- Aguilar LC, et al. (2020) Altered rRNA processing disrupts nuclear RNA homeostasis via competition for the poly(A)-binding protein Nab2. Nucleic Acids Res 48(20):11675-11694 PMID:33137177
- Bartolec TK, et al. (2020) Cross-linking Mass Spectrometry Analysis of the Yeast Nucleus Reveals Extensive Protein-Protein Interactions Not Detected by Systematic Two-Hybrid or Affinity Purification-Mass Spectrometry. Anal Chem 92(2): 1874-1882. PMID:31851481
- Gotor NL, et al. (2020) RNA-binding and prion domains: the Yin and Yang of phase separation. Nucleic Acids Res 48(17):9491-9504 PMID:32857852
- Becker D, et al. (2019) Nuclear Pre-snRNA Export Is an Essential Quality Assurance Mechanism for Functional Spliceosomes. Cell Rep 27(11):3199-3214.e3 PMID:31189105
- Wan R, et al. (2019) Structures of the Catalytically Activated Yeast Spliceosome Reveal the Mechanism of Branching. Cell 177(2):339-351.e13 PMID:30879786
- Miller JE, et al. (2018) Genome-Wide Mapping of Decay Factor-mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4. G3 (Bethesda) 8(1):315-330 PMID:29158339
- Lapointe CP, et al. (2017) Architecture and dynamics of overlapped RNA regulatory networks. RNA 23(11):1636-1647 PMID:28768715
- Liu S, et al. (2017) Structure of the yeast spliceosomal postcatalytic P complex. Science 358(6368):1278-1283 PMID:29146870
- Li X, et al. (2017) CryoEM structure of Saccharomyces cerevisiae U1 snRNP offers insight into alternative splicing. Nat Commun 8(1):1035 PMID:29051543
- Schwer B, et al. (2017) Will the circle be unbroken: specific mutations in the yeast Sm protein ring expose a requirement for assembly factor Brr1, a homolog of Gemin2. RNA 23(3):420-430 PMID:27974620
- Lemieux B, et al. (2016) Active Yeast Telomerase Shares Subunits with Ribonucleoproteins RNase P and RNase MRP. Cell 165(5):1171-1181 PMID:27156450
- Schwer B, et al. (2016) Structure-function analysis and genetic interactions of the SmG, SmE, and SmF subunits of the yeast Sm protein ring. RNA 22(9):1320-8 PMID:27417296
- van Leeuwen J, et al. (2016) Exploring genetic suppression interactions on a global scale. Science 354(6312) PMID:27811238
- Lin KW, et al. (2015) Proteomics of yeast telomerase identified Cdc48-Npl4-Ufd1 and Ufd4 as regulators of Est1 and telomere length. Nat Commun 6:8290 PMID:26365526
- Schwer B and Shuman S (2015) Structure-function analysis and genetic interactions of the Yhc1, SmD3, SmB, and Snp1 subunits of yeast U1 snRNP and genetic interactions of SmD3 with U2 snRNP subunit Lea1. RNA 21(6):1173-86 PMID:25897024
- Zhang L, et al. (2015) Brr2 plays a role in spliceosomal activation in addition to U4/U6 unwinding. Nucleic Acids Res 43(6):3286-97 PMID:25670679
- Bretes H, et al. (2014) Sumoylation of the THO complex regulates the biogenesis of a subset of mRNPs. Nucleic Acids Res 42(8):5043-58 PMID:24500206
- Srikumar T, et al. (2013) A global S. cerevisiae small ubiquitin-related modifier (SUMO) system interactome. Mol Syst Biol 9:668 PMID:23712011
- Chang J, et al. (2012) Structure-function analysis and genetic interactions of the yeast branchpoint binding protein Msl5. Nucleic Acids Res 40(10):4539-52 PMID:22287628
- Richardson R, et al. (2012) Mass spectrometric identification of proteins that interact through specific domains of the poly(A) binding protein. Mol Genet Genomics 287(9):711-730 PMID:22836166
- Schenk L, et al. (2012) La-motif-dependent mRNA association with Slf1 promotes copper detoxification in yeast. RNA 18(3):449-61 PMID:22271760
- García-Gómez JJ, et al. (2011) Dynamics of the putative RNA helicase Spb4 during ribosome assembly in Saccharomyces cerevisiae. Mol Cell Biol 31(20):4156-64 PMID:21825077
- Mishra SK, et al. (2011) Role of the ubiquitin-like protein Hub1 in splice-site usage and alternative splicing. Nature 474(7350):173-8 PMID:21614000
- Ren L, et al. (2011) Systematic two-hybrid and comparative proteomic analyses reveal novel yeast pre-mRNA splicing factors connected to Prp19. PLoS One 6(2):e16719 PMID:21386897
- Scherrer T, et al. (2011) Defining potentially conserved RNA regulons of homologous zinc-finger RNA-binding proteins. Genome Biol 12(1):R3 PMID:21232131
- Schwer B, et al. (2011) Composition of yeast snRNPs and snoRNPs in the absence of trimethylguanosine caps reveals nuclear cap binding protein as a gained U1 component implicated in the cold-sensitivity of tgs1Δ cells. Nucleic Acids Res 39(15):6715-28 PMID:21558325
- Batisse J, et al. (2009) Purification of nuclear poly(A)-binding protein Nab2 reveals association with the yeast transcriptome and a messenger ribonucleoprotein core structure. J Biol Chem 284(50):34911-7 PMID:19840948
- Khanna M, et al. (2009) A systematic characterization of Cwc21, the yeast ortholog of the human spliceosomal protein SRm300. RNA 15(12):2174-85 PMID:19789211
- Taoka M, et al. (2009) An analytical platform for mass spectrometry-based identification and chemical analysis of RNA in ribonucleoprotein complexes. Nucleic Acids Res 37(21):e140 PMID:19740761
- Häcker I, et al. (2008) Localization of Prp8, Brr2, Snu114 and U4/U6 proteins in the yeast tri-snRNP by electron microscopy. Nat Struct Mol Biol 15(11):1206-12 PMID:18953335
- Tarassov K, et al. (2008) An in vivo map of the yeast protein interactome. Science 320(5882):1465-70 PMID:18467557
- Oeffinger M, et al. (2007) Comprehensive analysis of diverse ribonucleoprotein complexes. Nat Methods 4(11):951-6 PMID:17922018
- Gavin AC, et al. (2006) Proteome survey reveals modularity of the yeast cell machinery. Nature 440(7084):631-6 PMID:16429126
- Krogan NJ, et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 440(7084):637-43 PMID:16554755
- Tardiff DF and Rosbash M (2006) Arrested yeast splicing complexes indicate stepwise snRNP recruitment during in vivo spliceosome assembly. RNA 12(6):968-79 PMID:16618970
- Hazbun TR, et al. (2003) Assigning function to yeast proteins by integration of technologies. Mol Cell 12(6):1353-65 PMID:14690591
- Wang Q, et al. (2003) The Clf1p splicing factor promotes spliceosome assembly through N-terminal tetratricopeptide repeat contacts. J Biol Chem 278(10):7875-83 PMID:12509417
- Gavin AC, et al. (2002) Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415(6868):141-7 PMID:11805826
- Ho Y, et al. (2002) Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature 415(6868):180-3 PMID:11805837
- Mouaikel J, et al. (2002) Hypermethylation of the cap structure of both yeast snRNAs and snoRNAs requires a conserved methyltransferase that is localized to the nucleolus. Mol Cell 9(4):891-901 PMID:11983179
- Ohi MD, et al. (2002) Proteomics analysis reveals stable multiprotein complexes in both fission and budding yeasts containing Myb-related Cdc5p/Cef1p, novel pre-mRNA splicing factors, and snRNAs. Mol Cell Biol 22(7):2011-24 PMID:11884590
- Sanders SL, et al. (2002) Proteomics of the eukaryotic transcription machinery: identification of proteins associated with components of yeast TFIID by multidimensional mass spectrometry. Mol Cell Biol 22(13):4723-38 PMID:12052880
- Stevens SW, et al. (2002) Composition and functional characterization of the yeast spliceosomal penta-snRNP. Mol Cell 9(1):31-44 PMID:11804584
- Stevens SW, et al. (2001) Biochemical and genetic analyses of the U5, U6, and U4/U6 x U5 small nuclear ribonucleoproteins from Saccharomyces cerevisiae. RNA 7(11):1543-53 PMID:11720284
- Bouveret E, et al. (2000) A Sm-like protein complex that participates in mRNA degradation. EMBO J 19(7):1661-71 PMID:10747033
- Gottschalk A, et al. (1999) Identification by mass spectrometry and functional analysis of novel proteins of the yeast [U4/U6.U5] tri-snRNP. EMBO J 18(16):4535-48 PMID:10449419
- Mayes AE, et al. (1999) Characterization of Sm-like proteins in yeast and their association with U6 snRNA. EMBO J 18(15):4321-31 PMID:10428970
- Stevens SW and Abelson J (1999) Purification of the yeast U4/U6.U5 small nuclear ribonucleoprotein particle and identification of its proteins. Proc Natl Acad Sci U S A 96(13):7226-31 PMID:10377396
- Fromont-Racine M, et al. (1997) Toward a functional analysis of the yeast genome through exhaustive two-hybrid screens. Nat Genet 16(3):277-82 PMID:9207794
Regulation Literature
Paper(s) associated with one or more pieces of regulation evidence in SGD, as found on the
Regulation page.
No regulation literature curated.
Post-translational Modifications Literature
Paper(s) associated with one or more pieces of post-translational modifications evidence in SGD.
No post-translational modifications literature curated.
High-Throughput Literature
Paper(s) associated with one or more pieces of high-throughput evidence in SGD.
No high-throughput literature curated.
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- Mondeel TDGA, et al. (2019) ChIP-exo analysis highlights Fkh1 and Fkh2 transcription factors as hubs that integrate multi-scale networks in budding yeast. Nucleic Acids Res 47(15):7825-7841 PMID:31299083
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- Venters BJ, et al. (2011) A comprehensive genomic binding map of gene and chromatin regulatory proteins in Saccharomyces. Mol Cell 41(4):480-92 PMID:21329885
- Cipollina C, et al. (2008) Saccharomyces cerevisiae SFP1: at the crossroads of central metabolism and ribosome biogenesis. Microbiology (Reading) 154(Pt 6):1686-1699 PMID:18524923
- Hu Z, et al. (2007) Genetic reconstruction of a functional transcriptional regulatory network. Nat Genet 39(5):683-7 PMID:17417638
- Cohen BA, et al. (2002) Discrimination between paralogs using microarray analysis: application to the Yap1p and Yap2p transcriptional networks. Mol Biol Cell 13(5):1608-14 PMID:12006656