Literature Help
RSC6 / YCR052W Literature
All manually curated literature for the specified gene, organized by relevance to the gene and by
association with specific annotations to the gene in SGD. SGD gathers references via a PubMed search for
papers whose titles or abstracts contain “yeast” or “cerevisiae;” these papers are reviewed manually and
linked to relevant genes and literature topics by SGD curators.
Primary Literature
Literature that either focuses on the gene or contains information about function, biological role,
cellular location, phenotype, regulation, structure, or disease homologs in other species for the gene
or gene product.
No primary literature curated.
Download References (.nbib)
- Wagner FR, et al. (2020) Structure of SWI/SNF chromatin remodeller RSC bound to a nucleosome. Nature 579(7799):448-451 PMID:32188943
- Patel AB, et al. (2019) Architecture of the chromatin remodeler RSC and insights into its nucleosome engagement. Elife 8 PMID:31886770
- Ye Y, et al. (2019) Structure of the RSC complex bound to the nucleosome. Science 366(6467):838-843 PMID:31672915
- Vinayachandran V, et al. (2018) Widespread and precise reprogramming of yeast protein-genome interactions in response to heat shock. Genome Res 28(3):357-366 PMID:29444801
- Harada BT, et al. (2016) Stepwise nucleosome translocation by RSC remodeling complexes. Elife 5 PMID:26895087
- Yu F, et al. (2015) The yeast chromatin remodeler Rsc1-RSC complex is required for transcriptional activation of autophagy-related genes and inhibition of the TORC1 pathway in response to nitrogen starvation. Biochem Biophys Res Commun 464(4):1248-1253 PMID:26212438
- Spain MM, et al. (2014) The RSC complex localizes to coding sequences to regulate Pol II and histone occupancy. Mol Cell 56(5):653-66 PMID:25457164
- Novo M, et al. (2013) Genome-wide study of the adaptation of Saccharomyces cerevisiae to the early stages of wine fermentation. PLoS One 8(9):e74086 PMID:24040173
- Srivas R, et al. (2013) A UV-induced genetic network links the RSC complex to nucleotide excision repair and shows dose-dependent rewiring. Cell Rep 5(6):1714-24 PMID:24360959
- Wippo CJ, et al. (2011) The RSC chromatin remodelling enzyme has a unique role in directing the accurate positioning of nucleosomes. EMBO J 30(7):1277-88 PMID:21343911
- Floer M, et al. (2010) A RSC/nucleosome complex determines chromatin architecture and facilitates activator binding. Cell 141(3):407-18 PMID:20434983
- Campsteijn C, et al. (2007) Reverse genetic analysis of the yeast RSC chromatin remodeler reveals a role for RSC3 and SNF5 homolog 1 in ploidy maintenance. PLoS Genet 3(6):e92 PMID:17542652
- Fischer CJ, et al. (2007) Kinetic model for the ATP-dependent translocation of Saccharomyces cerevisiae RSC along double-stranded DNA. Biochemistry 46(43):12416-26 PMID:17918861
- Michelsen K, et al. (2007) Novel cargo-binding site in the beta and delta subunits of coatomer. J Cell Biol 179(2):209-17 PMID:17954604
- Carey M, et al. (2006) RSC exploits histone acetylation to abrogate the nucleosomal block to RNA polymerase II elongation. Mol Cell 24(3):481-7 PMID:17081996
- Lia G, et al. (2006) Direct observation of DNA distortion by the RSC complex. Mol Cell 21(3):417-25 PMID:16455496
- Lorch Y, et al. (2006) Chromatin remodeling by nucleosome disassembly in vitro. Proc Natl Acad Sci U S A 103(9):3090-3 PMID:16492771
- Zhang Y, et al. (2006) DNA translocation and loop formation mechanism of chromatin remodeling by SWI/SNF and RSC. Mol Cell 24(4):559-68 PMID:17188033
- Saha A, et al. (2002) Chromatin remodeling by RSC involves ATP-dependent DNA translocation. Genes Dev 16(16):2120-34 PMID:12183366
- Cairns BR, et al. (1999) Two functionally distinct forms of the RSC nucleosome-remodeling complex, containing essential AT hook, BAH, and bromodomains. Mol Cell 4(5):715-23 PMID:10619019
- Lorch Y, et al. (1999) Histone octamer transfer by a chromatin-remodeling complex. Cell 96(3):389-92 PMID:10025404
- Lorch Y, et al. (1998) Activated RSC-nucleosome complex and persistently altered form of the nucleosome. Cell 94(1):29-34 PMID:9674424
- Treich I, et al. (1998) Direct interaction between Rsc6 and Rsc8/Swh3,two proteins that are conserved in SWI/SNF-related complexes. Nucleic Acids Res 26(16):3739-45 PMID:9685490
- Cairns BR, et al. (1996) RSC, an essential, abundant chromatin-remodeling complex. Cell 87(7):1249-60 PMID:8980231
Related Literature
Genes that share literature (indicated by the purple circles) with the specified gene (indicated by yellow circle).
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Additional Literature
Papers that show experimental evidence for the gene or describe homologs in other species, but
for which the gene is not the paper’s principal focus.
No additional literature curated.
Download References (.nbib)
- Nischwitz E, et al. (2023) DNA damage repair proteins across the Tree of Life. iScience 26(6):106778 PMID:37250769
- Lanz MC, et al. (2021) In-depth and 3-dimensional exploration of the budding yeast phosphoproteome. EMBO Rep 22(2):e51121 PMID:33491328
- Lin J, et al. (2019) Transcription factor Znf2 coordinates with the chromatin remodeling SWI/SNF complex to regulate cryptococcal cellular differentiation. Commun Biol 2:412 PMID:31754642
- Qiu H, et al. (2016) Genome-wide cooperation by HAT Gcn5, remodeler SWI/SNF, and chaperone Ydj1 in promoter nucleosome eviction and transcriptional activation. Genome Res 26(2):211-25 PMID:26602697
- Lin TY, et al. (2015) Dual tagging as an approach to isolate endogenous chromatin remodeling complexes from Saccharomyces cerevisiae. Biochim Biophys Acta 1854(3):198-208 PMID:25486077
- Duan MR and Smerdon MJ (2014) Histone H3 lysine 14 (H3K14) acetylation facilitates DNA repair in a positioned nucleosome by stabilizing the binding of the chromatin Remodeler RSC (Remodels Structure of Chromatin). J Biol Chem 289(12):8353-63 PMID:24515106
- Gilmore JM, et al. (2012) Characterization of a highly conserved histone related protein, Ydl156w, and its functional associations using quantitative proteomic analyses. Mol Cell Proteomics 11(4):M111.011544 PMID:22199229
- Kuryan BG, et al. (2012) Histone density is maintained during transcription mediated by the chromatin remodeler RSC and histone chaperone NAP1 in vitro. Proc Natl Acad Sci U S A 109(6):1931-6 PMID:22308335
- Sikorski TW, et al. (2012) Proteomic analysis demonstrates activator- and chromatin-specific recruitment to promoters. J Biol Chem 287(42):35397-35408 PMID:22902623
- Andress EJ, et al. (2011) Dia2 controls transcription by mediating assembly of the RSC complex. PLoS One 6(6):e21172 PMID:21701592
- Chatterjee N, et al. (2011) Histone H3 tail acetylation modulates ATP-dependent remodeling through multiple mechanisms. Nucleic Acids Res 39(19):8378-91 PMID:21749977
- Kurat CF, et al. (2011) Restriction of histone gene transcription to S phase by phosphorylation of a chromatin boundary protein. Genes Dev 25(23):2489-501 PMID:22156209
- Liu N, et al. (2011) SWI/SNF- and RSC-catalyzed nucleosome mobilization requires internal DNA loop translocation within nucleosomes. Mol Cell Biol 31(20):4165-75 PMID:21859889
- Lorch Y, et al. (2011) Selective removal of promoter nucleosomes by the RSC chromatin-remodeling complex. Nat Struct Mol Biol 18(8):881-5 PMID:21725295
- Montel F, et al. (2011) RSC remodeling of oligo-nucleosomes: an atomic force microscopy study. Nucleic Acids Res 39(7):2571-9 PMID:21138962
- Venters BJ, et al. (2011) A comprehensive genomic binding map of gene and chromatin regulatory proteins in Saccharomyces. Mol Cell 41(4):480-92 PMID:21329885
- On T, et al. (2010) The evolutionary landscape of the chromatin modification machinery reveals lineage specific gains, expansions, and losses. Proteins 78(9):2075-89 PMID:20455264
- Rowe CE and Narlikar GJ (2010) The ATP-dependent remodeler RSC transfers histone dimers and octamers through the rapid formation of an unstable encounter intermediate. Biochemistry 49(45):9882-90 PMID:20853842
- Annan RB, et al. (2009) A biochemical genomics screen for substrates of Ste20p kinase enables the in silico prediction of novel substrates. PLoS One 4(12):e8279 PMID:20020052
- Partensky PD and Narlikar GJ (2009) Chromatin remodelers act globally, sequence positions nucleosomes locally. J Mol Biol 391(1):12-25 PMID:19450608
- Sinha M, et al. (2009) Recombinational repair within heterochromatin requires ATP-dependent chromatin remodeling. Cell 138(6):1109-21 PMID:19766565
- Somers J and Owen-Hughes T (2009) Mutations to the histone H3 alpha N region selectively alter the outcome of ATP-dependent nucleosome-remodelling reactions. Nucleic Acids Res 37(8):2504-13 PMID:19264807
- Arnett DR, et al. (2008) A proteomics analysis of yeast Mot1p protein-protein associations: insights into mechanism. Mol Cell Proteomics 7(11):2090-106 PMID:18596064
- Breslow DK, et al. (2008) A comprehensive strategy enabling high-resolution functional analysis of the yeast genome. Nat Methods 5(8):711-8 PMID:18622397
- Chaban Y, et al. (2008) Structure of a RSC-nucleosome complex and insights into chromatin remodeling. Nat Struct Mol Biol 15(12):1272-7 PMID:19029894
- Choi JK, et al. (2008) Acetylation of Rsc4p by Gcn5p is essential in the absence of histone H3 acetylation. Mol Cell Biol 28(23):6967-72 PMID:18809572
- Szklarczyk R, et al. (2008) Complex fate of paralogs. BMC Evol Biol 8:337 PMID:19094234
- Ferreira H, et al. (2007) Histone modifications influence the action of Snf2 family remodelling enzymes by different mechanisms. J Mol Biol 374(3):563-79 PMID:17949749
- Leschziner AE, et al. (2007) Conformational flexibility in the chromatin remodeler RSC observed by electron microscopy and the orthogonal tilt reconstruction method. Proc Natl Acad Sci U S A 104(12):4913-8 PMID:17360331
- Skiniotis G, et al. (2007) Acetylated histone tail peptides induce structural rearrangements in the RSC chromatin remodeling complex. J Biol Chem 282(29):20804-8 PMID:17535815
- Chandy M, et al. (2006) SWI/SNF displaces SAGA-acetylated nucleosomes. Eukaryot Cell 5(10):1738-47 PMID:17030999
- Suka N, et al. (2006) The WD40-repeat protein Pwp1p associates in vivo with 25S ribosomal chromatin in a histone H4 tail-dependent manner. Nucleic Acids Res 34(12):3555-67 PMID:16855292
- van Hoof A (2005) Conserved functions of yeast genes support the duplication, degeneration and complementation model for gene duplication. Genetics 171(4):1455-61 PMID:15965245
- Lorch Y and Kornberg RD (2004) Isolation and assay of the RSC chromatin-remodeling complex from Saccharomyces cerevisiae. Methods Enzymol 377:316-22 PMID:14979034
- Logie C, et al. (1999) The core histone N-terminal domains are required for multiple rounds of catalytic chromatin remodeling by the SWI/SNF and RSC complexes. Biochemistry 38(8):2514-22 PMID:10029546
- Papoulas O, et al. (1998) The Drosophila trithorax group proteins BRM, ASH1 and ASH2 are subunits of distinct protein complexes. Development 125(20):3955-66 PMID:9735357
- Cairns BR, et al. (1996) Essential role of Swp73p in the function of yeast Swi/Snf complex. Genes Dev 10(17):2131-44 PMID:8804308
- Koonin EV, et al. (1994) Yeast chromosome III: new gene functions. EMBO J 13(3):493-503 PMID:8313894
Reviews
No reviews curated.
Gene Ontology Literature
Paper(s) associated with one or more GO (Gene Ontology) terms in SGD for the specified gene.
No gene ontology literature curated.
Download References (.nbib)
- Patel AB, et al. (2019) Architecture of the chromatin remodeler RSC and insights into its nucleosome engagement. Elife 8 PMID:31886770
- Carey M, et al. (2006) RSC exploits histone acetylation to abrogate the nucleosomal block to RNA polymerase II elongation. Mol Cell 24(3):481-7 PMID:17081996
- Lorch Y, et al. (2006) Chromatin remodeling by nucleosome disassembly in vitro. Proc Natl Acad Sci U S A 103(9):3090-3 PMID:16492771
- Saha A, et al. (2002) Chromatin remodeling by RSC involves ATP-dependent DNA translocation. Genes Dev 16(16):2120-34 PMID:12183366
- Cairns BR, et al. (1999) Two functionally distinct forms of the RSC nucleosome-remodeling complex, containing essential AT hook, BAH, and bromodomains. Mol Cell 4(5):715-23 PMID:10619019
Phenotype Literature
Paper(s) associated with one or more pieces of classical phenotype evidence in SGD for the specified gene.
No phenotype literature curated.
Interaction Literature
Paper(s) associated with evidence supporting a physical or genetic interaction between the
specified gene and another gene in SGD. Currently, all interaction evidence is obtained from
BioGRID.
No interaction literature curated.
Download References (.nbib)
- Kim JM, et al. (2024) Dynamic 1D search and processive nucleosome translocations by RSC and ISW2 chromatin remodelers. Elife 12 PMID:38497611
- O'Brien MJ and Ansari A (2024) Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle. Biochim Biophys Acta Proteins Proteom 1872(1):140968 PMID:37863410
- Litwin I, et al. (2023) ISW1a modulates cohesin distribution in centromeric and pericentromeric regions. Nucleic Acids Res 51(17):9101-9121 PMID:37486771
- Michaelis AC, et al. (2023) The social and structural architecture of the yeast protein interactome. Nature 624(7990):192-200 PMID:37968396
- Lehner MH, et al. (2022) Yeast Smy2 and its human homologs GIGYF1 and -2 regulate Cdc48/VCP function during transcription stress. Cell Rep 41(4):111536 PMID:36288698
- Muñoz S, et al. (2022) Functional crosstalk between the cohesin loader and chromatin remodelers. Nat Commun 13(1):7698 PMID:36509793
- Perica T, et al. (2021) Systems-level effects of allosteric perturbations to a model molecular switch. Nature 599(7883):152-157 PMID:34646016
- Su XB, et al. (2021) SUMOylation stabilizes sister kinetochore biorientation to allow timely anaphase. J Cell Biol 220(7) PMID:33929514
- Gutierrez-Escribano P, et al. (2020) Purified Smc5/6 Complex Exhibits DNA Substrate Recognition and Compaction. Mol Cell 80(6):1039-1054.e6 PMID:33301732
- Schlichter A, et al. (2020) Specialization of the chromatin remodeler RSC to mobilize partially-unwrapped nucleosomes. Elife 9 PMID:32496195
- Wagner FR, et al. (2020) Structure of SWI/SNF chromatin remodeller RSC bound to a nucleosome. Nature 579(7799):448-451 PMID:32188943
- Bhalla P, et al. (2019) Interactome of the yeast RNA polymerase III transcription machinery constitutes several chromatin modifiers and regulators of the genes transcribed by RNA polymerase II. Gene 702:205-214 PMID:30593915
- Patel AB, et al. (2019) Architecture of the chromatin remodeler RSC and insights into its nucleosome engagement. Elife 8 PMID:31886770
- MacGilvray ME, et al. (2018) Network inference reveals novel connections in pathways regulating growth and defense in the yeast salt response. PLoS Comput Biol 13(5):e1006088 PMID:29738528
- Miller JE, et al. (2018) Genome-Wide Mapping of Decay Factor-mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4. G3 (Bethesda) 8(1):315-330 PMID:29158339
- Chymkowitch P, et al. (2017) TORC1-dependent sumoylation of Rpc82 promotes RNA polymerase III assembly and activity. Proc Natl Acad Sci U S A 114(5):1039-1044 PMID:28096404
- Costanzo M, et al. (2016) A global genetic interaction network maps a wiring diagram of cellular function. Science 353(6306) PMID:27708008
- Kurat CF, et al. (2014) Cell cycle-regulated oscillator coordinates core histone gene transcription through histone acetylation. Proc Natl Acad Sci U S A 111(39):14124-9 PMID:25228766
- Sung MK, et al. (2013) Genome-wide bimolecular fluorescence complementation analysis of SUMO interactome in yeast. Genome Res 23(4):736-46 PMID:23403034
- van Pel DM, et al. (2013) Saccharomyces cerevisiae genetics predicts candidate therapeutic genetic interactions at the mammalian replication fork. G3 (Bethesda) 3(2):273-82 PMID:23390603
- Chambers AL, et al. (2012) The two different isoforms of the RSC chromatin remodeling complex play distinct roles in DNA damage responses. PLoS One 7(2):e32016 PMID:22359657
- Chen XF, et al. (2012) The Rpd3 core complex is a chromatin stabilization module. Curr Biol 22(1):56-63 PMID:22177115
- Gilmore JM, et al. (2012) Characterization of a highly conserved histone related protein, Ydl156w, and its functional associations using quantitative proteomic analyses. Mol Cell Proteomics 11(4):M111.011544 PMID:22199229
- Andress EJ, et al. (2011) Dia2 controls transcription by mediating assembly of the RSC complex. PLoS One 6(6):e21172 PMID:21701592
- Chatterjee N, et al. (2011) Histone H3 tail acetylation modulates ATP-dependent remodeling through multiple mechanisms. Nucleic Acids Res 39(19):8378-91 PMID:21749977
- Fasolo J, et al. (2011) Diverse protein kinase interactions identified by protein microarrays reveal novel connections between cellular processes. Genes Dev 25(7):767-78 PMID:21460040
- Kurat CF, et al. (2011) Restriction of histone gene transcription to S phase by phosphorylation of a chromatin boundary protein. Genes Dev 25(23):2489-501 PMID:22156209
- Akiyoshi B, et al. (2010) Tension directly stabilizes reconstituted kinetochore-microtubule attachments. Nature 468(7323):576-9 PMID:21107429
- Ranjitkar P, et al. (2010) An E3 ubiquitin ligase prevents ectopic localization of the centromeric histone H3 variant via the centromere targeting domain. Mol Cell 40(3):455-64 PMID:21070971
- Annan RB, et al. (2009) A biochemical genomics screen for substrates of Ste20p kinase enables the in silico prediction of novel substrates. PLoS One 4(12):e8279 PMID:20020052
- Beltrao P, et al. (2009) Evolution of phosphoregulation: comparison of phosphorylation patterns across yeast species. PLoS Biol 7(6):e1000134 PMID:19547744
- Lambert JP, et al. (2009) A novel proteomics approach for the discovery of chromatin-associated protein networks. Mol Cell Proteomics 8(4):870-82 PMID:19106085
- Arnett DR, et al. (2008) A proteomics analysis of yeast Mot1p protein-protein associations: insights into mechanism. Mol Cell Proteomics 7(11):2090-106 PMID:18596064
- Collins SR, et al. (2007) Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map. Nature 446(7137):806-10 PMID:17314980
- Ferreira H, et al. (2007) Histone modifications influence the action of Snf2 family remodelling enzymes by different mechanisms. J Mol Biol 374(3):563-79 PMID:17949749
- Gavin AC, et al. (2006) Proteome survey reveals modularity of the yeast cell machinery. Nature 440(7084):631-6 PMID:16429126
- Krogan NJ, et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 440(7084):637-43 PMID:16554755
- Soutourina J, et al. (2006) Rsc4 connects the chromatin remodeler RSC to RNA polymerases. Mol Cell Biol 26(13):4920-33 PMID:16782880
- Ptacek J, et al. (2005) Global analysis of protein phosphorylation in yeast. Nature 438(7068):679-84 PMID:16319894
- Baetz KK, et al. (2004) The ctf13-30/CTF13 genomic haploinsufficiency modifier screen identifies the yeast chromatin remodeling complex RSC, which is required for the establishment of sister chromatid cohesion. Mol Cell Biol 24(3):1232-44 PMID:14729968
- Graumann J, et al. (2004) Applicability of tandem affinity purification MudPIT to pathway proteomics in yeast. Mol Cell Proteomics 3(3):226-37 PMID:14660704
- Kasten M, et al. (2004) Tandem bromodomains in the chromatin remodeler RSC recognize acetylated histone H3 Lys14. EMBO J 23(6):1348-59 PMID:15014446
- Krogan NJ, et al. (2004) High-definition macromolecular composition of yeast RNA-processing complexes. Mol Cell 13(2):225-39 PMID:14759368
- Pan X, et al. (2004) A robust toolkit for functional profiling of the yeast genome. Mol Cell 16(3):487-96 PMID:15525520
- Szerlong H, et al. (2003) The nuclear actin-related proteins Arp7 and Arp9: a dimeric module that cooperates with architectural proteins for chromatin remodeling. EMBO J 22(12):3175-87 PMID:12805231
- Damelin M, et al. (2002) The genome-wide localization of Rsc9, a component of the RSC chromatin-remodeling complex, changes in response to stress. Mol Cell 9(3):563-73 PMID:11931764
- Gavin AC, et al. (2002) Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415(6868):141-7 PMID:11805826
- Saha A, et al. (2002) Chromatin remodeling by RSC involves ATP-dependent DNA translocation. Genes Dev 16(16):2120-34 PMID:12183366
- Sanders SL, et al. (2002) Proteomics of the eukaryotic transcription machinery: identification of proteins associated with components of yeast TFIID by multidimensional mass spectrometry. Mol Cell Biol 22(13):4723-38 PMID:12052880
- Ito T, et al. (2001) A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc Natl Acad Sci U S A 98(8):4569-74 PMID:11283351
- Cairns BR, et al. (1999) Two functionally distinct forms of the RSC nucleosome-remodeling complex, containing essential AT hook, BAH, and bromodomains. Mol Cell 4(5):715-23 PMID:10619019
- Treich I, et al. (1998) Direct interaction between Rsc6 and Rsc8/Swh3,two proteins that are conserved in SWI/SNF-related complexes. Nucleic Acids Res 26(16):3739-45 PMID:9685490
- Cao Y, et al. (1997) Sfh1p, a component of a novel chromatin-remodeling complex, is required for cell cycle progression. Mol Cell Biol 17(6):3323-34 PMID:9154831
Regulation Literature
Paper(s) associated with one or more pieces of regulation evidence in SGD, as found on the
Regulation page.
No regulation literature curated.
Post-translational Modifications Literature
Paper(s) associated with one or more pieces of post-translational modifications evidence in SGD.
No post-translational modifications literature curated.
Download References (.nbib)
- King GA, et al. (2023) Meiotic nuclear pore complex remodeling provides key insights into nuclear basket organization. J Cell Biol 222(2) PMID:36515990
- Leutert M, et al. (2023) The regulatory landscape of the yeast phosphoproteome. Nat Struct Mol Biol 30(11):1761-1773 PMID:37845410
- Lanz MC, et al. (2021) In-depth and 3-dimensional exploration of the budding yeast phosphoproteome. EMBO Rep 22(2):e51121 PMID:33491328
- Swaney DL, et al. (2013) Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation. Nat Methods 10(7):676-82 PMID:23749301
- Holt LJ, et al. (2009) Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution. Science 325(5948):1682-6 PMID:19779198
High-Throughput Literature
Paper(s) associated with one or more pieces of high-throughput evidence in SGD.
No high-throughput literature curated.
Download References (.nbib)
- King GA, et al. (2023) Meiotic nuclear pore complex remodeling provides key insights into nuclear basket organization. J Cell Biol 222(2) PMID:36515990
- Coey CT and Clark DJ (2022) A systematic genome-wide account of binding sites for the model transcription factor Gcn4. Genome Res 32(2):367-377 PMID:34916251
- Forster DT, et al. (2022) BIONIC: biological network integration using convolutions. Nat Methods 19(10):1250-1261 PMID:36192463
- Chen X, et al. (2020) FMN reduces Amyloid-β toxicity in yeast by regulating redox status and cellular metabolism. Nat Commun 11(1):867 PMID:32054832
- Ohnuki S and Ohya Y (2018) High-dimensional single-cell phenotyping reveals extensive haploinsufficiency. PLoS Biol 16(5):e2005130 PMID:29768403
- Hoepfner D, et al. (2014) High-resolution chemical dissection of a model eukaryote reveals targets, pathways and gene functions. Microbiol Res 169(2-3):107-20 PMID:24360837
- Ostrow AZ, et al. (2014) Fkh1 and Fkh2 bind multiple chromosomal elements in the S. cerevisiae genome with distinct specificities and cell cycle dynamics. PLoS One 9(2):e87647 PMID:24504085
- Lis M, et al. (2013) Chemical genomic screening of a Saccharomyces cerevisiae genomewide mutant collection reveals genes required for defense against four antimicrobial peptides derived from proteins found in human saliva. Antimicrob Agents Chemother 57(2):840-7 PMID:23208710
- Novo M, et al. (2013) Genome-wide study of the adaptation of Saccharomyces cerevisiae to the early stages of wine fermentation. PLoS One 8(9):e74086 PMID:24040173
- Cheng E, et al. (2012) Genome rearrangements caused by depletion of essential DNA replication proteins in Saccharomyces cerevisiae. Genetics 192(1):147-60 PMID:22673806
- Pir P, et al. (2012) The genetic control of growth rate: a systems biology study in yeast. BMC Syst Biol 6:4 PMID:22244311
- Venters BJ, et al. (2011) A comprehensive genomic binding map of gene and chromatin regulatory proteins in Saccharomyces. Mol Cell 41(4):480-92 PMID:21329885
- Carroll SY, et al. (2009) A yeast killer toxin screen provides insights into a/b toxin entry, trafficking, and killing mechanisms. Dev Cell 17(4):552-60 PMID:19853568
- Ben-Aroya S, et al. (2008) Toward a comprehensive temperature-sensitive mutant repository of the essential genes of Saccharomyces cerevisiae. Mol Cell 30(2):248-58 PMID:18439903
- Breslow DK, et al. (2008) A comprehensive strategy enabling high-resolution functional analysis of the yeast genome. Nat Methods 5(8):711-8 PMID:18622397
- Sinha H, et al. (2008) Sequential elimination of major-effect contributors identifies additional quantitative trait loci conditioning high-temperature growth in yeast. Genetics 180(3):1661-70 PMID:18780730
- Botet J, et al. (2007) A chemogenomic screening of sulfanilamide-hypersensitive Saccharomyces cerevisiae mutants uncovers ABZ2, the gene encoding a fungal aminodeoxychorismate lyase. Eukaryot Cell 6(11):2102-11 PMID:17873082
- Michelsen K, et al. (2007) Novel cargo-binding site in the beta and delta subunits of coatomer. J Cell Biol 179(2):209-17 PMID:17954604
- Deutschbauer AM, et al. (2005) Mechanisms of haploinsufficiency revealed by genome-wide profiling in yeast. Genetics 169(4):1915-25 PMID:15716499
- Giaever G, et al. (2002) Functional profiling of the Saccharomyces cerevisiae genome. Nature 418(6896):387-91 PMID:12140549
- Jorgensen P, et al. (2002) Systematic identification of pathways that couple cell growth and division in yeast. Science 297(5580):395-400 PMID:12089449