Literature Help
POP5 / YAL033W Literature
All manually curated literature for the specified gene, organized by relevance to the gene and by
association with specific annotations to the gene in SGD. SGD gathers references via a PubMed search for
papers whose titles or abstracts contain “yeast” or “cerevisiae;” these papers are reviewed manually and
linked to relevant genes and literature topics by SGD curators.
- Unique References
- 77
- Aliases
-
FUN53
4
Primary Literature
Literature that either focuses on the gene or contains information about function, biological role,
cellular location, phenotype, regulation, structure, or disease homologs in other species for the gene
or gene product.
No primary literature curated.
Download References (.nbib)
- Perederina A, et al. (2023) Proteins Rpr2 and Pop3 increase the activity and thermal stability of yeast RNase P. RNA Biol 20(1):149-153 PMID:37074161
- Lan P, et al. (2020) Structural insight into precursor ribosomal RNA processing by ribonuclease MRP. Science 369(6504):656-663 PMID:32586950
- Perederina A, et al. (2020) Cryo-EM structure of catalytic ribonucleoprotein complex RNase MRP. Nat Commun 11(1):3474 PMID:32651392
- Lan P, et al. (2018) Structural insight into precursor tRNA processing by yeast ribonuclease P. Science 362(6415) PMID:30262633
- Perederina A, et al. (2018) In vitro reconstitution and analysis of eukaryotic RNase P RNPs. Nucleic Acids Res 46(13):6857-6868 PMID:29722866
- Esakova O, et al. (2013) Conserved regions of ribonucleoprotein ribonuclease MRP are involved in interactions with its substrate. Nucleic Acids Res 41(14):7084-91 PMID:23700311
- Khanova E, et al. (2012) Structural organizations of yeast RNase P and RNase MRP holoenzymes as revealed by UV-crosslinking studies of RNA-protein interactions. RNA 18(4):720-8 PMID:22332141
- Marvin MC, et al. (2011) Accumulation of noncoding RNA due to an RNase P defect in Saccharomyces cerevisiae. RNA 17(8):1441-50 PMID:21665995
- Marvin MC, et al. (2011) Binding and cleavage of unstructured RNA by nuclear RNase P. RNA 17(8):1429-40 PMID:21665997
- Perederina A, et al. (2011) Interactions of a Pop5/Rpp1 heterodimer with the catalytic domain of RNase MRP. RNA 17(10):1922-31 PMID:21878546
- Lu Q, et al. (2010) Comparison of mitochondrial and nucleolar RNase MRP reveals identical RNA components with distinct enzymatic activities and protein components. RNA 16(3):529-37 PMID:20086051
- Coughlin DJ, et al. (2008) Genome-wide search for yeast RNase P substrates reveals role in maturation of intron-encoded box C/D small nucleolar RNAs. Proc Natl Acad Sci U S A 105(34):12218-23 PMID:18713869
- Aspinall TV, et al. (2007) Interactions between subunits of Saccharomyces cerevisiae RNase MRP support a conserved eukaryotic RNase P/MRP architecture. Nucleic Acids Res 35(19):6439-50 PMID:17881380
- Gill T, et al. (2004) RNase MRP cleaves the CLB2 mRNA to promote cell cycle progression: novel method of mRNA degradation. Mol Cell Biol 24(3):945-53 PMID:14729943
- Hall TA and Brown JW (2002) Archaeal RNase P has multiple protein subunits homologous to eukaryotic nuclear RNase P proteins. RNA 8(3):296-306 PMID:12003490
- Houser-Scott F, et al. (2002) Interactions among the protein and RNA subunits of Saccharomyces cerevisiae nuclear RNase P. Proc Natl Acad Sci U S A 99(5):2684-9 PMID:11880623
- Pfeiffer T, et al. (2000) Effects of phosphorothioate modifications on precursor tRNA processing by eukaryotic RNase P enzymes. J Mol Biol 298(4):559-65 PMID:10788319
- Thomas BC, et al. (2000) Evidence for an RNA-based catalytic mechanism in eukaryotic nuclear ribonuclease P. RNA 6(4):554-62 PMID:10786846
- Ziehler WA, et al. (2000) Effects of 5' leader and 3' trailer structures on pre-tRNA processing by nuclear RNase P. Biochemistry 39(32):9909-16 PMID:10933810
- Allmang C and Tollervey D (1998) The role of the 3' external transcribed spacer in yeast pre-rRNA processing. J Mol Biol 278(1):67-78 PMID:9571034
- Chamberlain JR, et al. (1998) Purification and characterization of the nuclear RNase P holoenzyme complex reveals extensive subunit overlap with RNase MRP. Genes Dev 12(11):1678-90 PMID:9620854
- Harris SD, et al. (1992) Molecular analysis of Saccharomyces cerevisiae chromosome I. On the number of genes and the identification of essential genes using temperature-sensitive-lethal mutations. J Mol Biol 225(1):53-65 PMID:1583694
- Stohl LL and Clayton DA (1992) Saccharomyces cerevisiae contains an RNase MRP that cleaves at a conserved mitochondrial RNA sequence implicated in replication priming. Mol Cell Biol 12(6):2561-9 PMID:1588958
- Nichols M, et al. (1988) Yeast RNase P: catalytic activity and substrate binding are separate functions. Proc Natl Acad Sci U S A 85(5):1379-83 PMID:3278310
Related Literature
Genes that share literature (indicated by the purple circles) with the specified gene (indicated by yellow circle).
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Additional Literature
Papers that show experimental evidence for the gene or describe homologs in other species, but
for which the gene is not the paper’s principal focus.
No additional literature curated.
Download References (.nbib)
- Naiyer S, et al. (2022) Transcriptomic analysis of ribosome biogenesis and pre-rRNA processing during growth stress in Entamoeba histolytica. Exp Parasitol 239:108308 PMID:35718007
- Ishikawa K, et al. (2020) Exploring the Complexity of Protein-Level Dosage Compensation that Fine-Tunes Stoichiometry of Multiprotein Complexes. PLoS Genet 16(10):e1009091 PMID:33112847
- Lai LB, et al. (2020) Alternative Protein Topology-Mediated Evolution of a Catalytic Ribonucleoprotein. Trends Biochem Sci 45(10):825-828 PMID:32891515
- Ebersberger I, et al. (2014) The evolution of the ribosome biogenesis pathway from a yeast perspective. Nucleic Acids Res 42(3):1509-23 PMID:24234440
- Aulds J, et al. (2012) Global identification of new substrates for the yeast endoribonuclease, RNase mitochondrial RNA processing (MRP). J Biol Chem 287(44):37089-97 PMID:22977255
- Hipp K, et al. (2012) Modular architecture of eukaryotic RNase P and RNase MRP revealed by electron microscopy. Nucleic Acids Res 40(7):3275-88 PMID:22167472
- Turowski TW, et al. (2012) Maf1-mediated repression of RNA polymerase III transcription inhibits tRNA degradation via RTD pathway. RNA 18(10):1823-32 PMID:22919049
- Wang SQ, et al. (2012) GAMETOPHYTE DEFECTIVE 1, a putative subunit of RNases P/MRP, is essential for female gametogenesis and male competence in Arabidopsis. PLoS One 7(4):e33595 PMID:22509260
- Esakova O, et al. (2011) Substrate recognition by ribonucleoprotein ribonuclease MRP. RNA 17(2):356-64 PMID:21173200
- Gancarz BL, et al. (2011) Systematic identification of novel, essential host genes affecting bromovirus RNA replication. PLoS One 6(8):e23988 PMID:21915247
- Breslow DK, et al. (2008) A comprehensive strategy enabling high-resolution functional analysis of the yeast genome. Nat Methods 5(8):711-8 PMID:18622397
- Esakova O, et al. (2008) Footprinting analysis demonstrates extensive similarity between eukaryotic RNase P and RNase MRP holoenzymes. RNA 14(8):1558-67 PMID:18579867
- Gill T, et al. (2006) A specialized processing body that is temporally and asymmetrically regulated during the cell cycle in Saccharomyces cerevisiae. J Cell Biol 173(1):35-45 PMID:16585272
- Davierwala AP, et al. (2005) The synthetic genetic interaction spectrum of essential genes. Nat Genet 37(10):1147-52 PMID:16155567
- Bertrand E, et al. (1998) Nucleolar localization of early tRNA processing. Genes Dev 12(16):2463-8 PMID:9716399
Reviews
No reviews curated.
Download References (.nbib)
- Dörner K, et al. (2023) Ribosome biogenesis factors-from names to functions. EMBO J 42(7):e112699 PMID:36762427
- Tomecki R, et al. (2017) Comparison of preribosomal RNA processing pathways in yeast, plant and human cells - focus on coordinated action of endo- and exoribonucleases. FEBS Lett 591(13):1801-1850 PMID:28524231
- Henras AK, et al. (2015) An overview of pre-ribosomal RNA processing in eukaryotes. Wiley Interdiscip Rev RNA 6(2):225-42 PMID:25346433
- Hopper AK (2013) Transfer RNA post-transcriptional processing, turnover, and subcellular dynamics in the yeast Saccharomyces cerevisiae. Genetics 194(1):43-67 PMID:23633143
- Walker SC and Engelke DR (2006) Ribonuclease P: the evolution of an ancient RNA enzyme. Crit Rev Biochem Mol Biol 41(2):77-102 PMID:16595295
- Walker SC, et al. (2005) Probing the structure of Saccharomyces cerevisiae RNase MRP. Biochem Soc Trans 33(Pt 3):479-81 PMID:15916546
- Hopper AK and Phizicky EM (2003) tRNA transfers to the limelight. Genes Dev 17(2):162-80 PMID:12533506
- Xiao S, et al. (2001) Eukaryotic ribonuclease P: increased complexity to cope with the nuclear pre-tRNA pathway. J Cell Physiol 187(1):11-20 PMID:11241345
- Altman S, et al. (2000) Varieties of RNase P: a nomenclature problem? RNA 6(12):1689-94 PMID:11142368
- Kressler D, et al. (1999) Protein trans-acting factors involved in ribosome biogenesis in Saccharomyces cerevisiae. Mol Cell Biol 19(12):7897-912 PMID:10567516
Gene Ontology Literature
Paper(s) associated with one or more GO (Gene Ontology) terms in SGD for the specified gene.
No gene ontology literature curated.
Download References (.nbib)
- Esakova O, et al. (2013) Conserved regions of ribonucleoprotein ribonuclease MRP are involved in interactions with its substrate. Nucleic Acids Res 41(14):7084-91 PMID:23700311
- Coughlin DJ, et al. (2008) Genome-wide search for yeast RNase P substrates reveals role in maturation of intron-encoded box C/D small nucleolar RNAs. Proc Natl Acad Sci U S A 105(34):12218-23 PMID:18713869
- Aspinall TV, et al. (2007) Interactions between subunits of Saccharomyces cerevisiae RNase MRP support a conserved eukaryotic RNase P/MRP architecture. Nucleic Acids Res 35(19):6439-50 PMID:17881380
- Gill T, et al. (2004) RNase MRP cleaves the CLB2 mRNA to promote cell cycle progression: novel method of mRNA degradation. Mol Cell Biol 24(3):945-53 PMID:14729943
- Chamberlain JR, et al. (1998) Purification and characterization of the nuclear RNase P holoenzyme complex reveals extensive subunit overlap with RNase MRP. Genes Dev 12(11):1678-90 PMID:9620854
Phenotype Literature
Paper(s) associated with one or more pieces of classical phenotype evidence in SGD for the specified gene.
No phenotype literature curated.
Download References (.nbib)
- Chamberlain JR, et al. (1998) Purification and characterization of the nuclear RNase P holoenzyme complex reveals extensive subunit overlap with RNase MRP. Genes Dev 12(11):1678-90 PMID:9620854
- Harris SD, et al. (1992) Molecular analysis of Saccharomyces cerevisiae chromosome I. On the number of genes and the identification of essential genes using temperature-sensitive-lethal mutations. J Mol Biol 225(1):53-65 PMID:1583694
Interaction Literature
Paper(s) associated with evidence supporting a physical or genetic interaction between the
specified gene and another gene in SGD. Currently, all interaction evidence is obtained from
BioGRID.
No interaction literature curated.
Download References (.nbib)
- Bertgen L, et al. (2024) Distinct types of intramitochondrial protein aggregates protect mitochondria against proteotoxic stress. Cell Rep 43(4):114018 PMID:38551959
- Michaelis AC, et al. (2023) The social and structural architecture of the yeast protein interactome. Nature 624(7990):192-200 PMID:37968396
- Miller JE, et al. (2018) Genome-Wide Mapping of Decay Factor-mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4. G3 (Bethesda) 8(1):315-330 PMID:29158339
- Shu S and Ye K (2018) Structural and functional analysis of ribosome assembly factor Efg1. Nucleic Acids Res 46(4):2096-2106 PMID:29361028
- Costanzo M, et al. (2016) A global genetic interaction network maps a wiring diagram of cellular function. Science 353(6306) PMID:27708008
- Lemieux B, et al. (2016) Active Yeast Telomerase Shares Subunits with Ribonucleoproteins RNase P and RNase MRP. Cell 165(5):1171-1181 PMID:27156450
- van Pel DM, et al. (2013) Saccharomyces cerevisiae genetics predicts candidate therapeutic genetic interactions at the mammalian replication fork. G3 (Bethesda) 3(2):273-82 PMID:23390603
- Willmund F, et al. (2013) The cotranslational function of ribosome-associated Hsp70 in eukaryotic protein homeostasis. Cell 152(1-2):196-209 PMID:23332755
- Khanova E, et al. (2012) Structural organizations of yeast RNase P and RNase MRP holoenzymes as revealed by UV-crosslinking studies of RNA-protein interactions. RNA 18(4):720-8 PMID:22332141
- Schenk L, et al. (2012) La-motif-dependent mRNA association with Slf1 promotes copper detoxification in yeast. RNA 18(3):449-61 PMID:22271760
- Perederina A, et al. (2011) Interactions of a Pop5/Rpp1 heterodimer with the catalytic domain of RNase MRP. RNA 17(10):1922-31 PMID:21878546
- Stirling PC, et al. (2011) The complete spectrum of yeast chromosome instability genes identifies candidate CIN cancer genes and functional roles for ASTRA complex components. PLoS Genet 7(4):e1002057 PMID:21552543
- Lu Q, et al. (2010) Comparison of mitochondrial and nucleolar RNase MRP reveals identical RNA components with distinct enzymatic activities and protein components. RNA 16(3):529-37 PMID:20086051
- Batisse J, et al. (2009) Purification of nuclear poly(A)-binding protein Nab2 reveals association with the yeast transcriptome and a messenger ribonucleoprotein core structure. J Biol Chem 284(50):34911-7 PMID:19840948
- Hsieh J, et al. (2009) Pre-tRNA turnover catalyzed by the yeast nuclear RNase P holoenzyme is limited by product release. RNA 15(2):224-34 PMID:19095620
- Aspinall TV, et al. (2007) Interactions between subunits of Saccharomyces cerevisiae RNase MRP support a conserved eukaryotic RNase P/MRP architecture. Nucleic Acids Res 35(19):6439-50 PMID:17881380
- McClellan AJ, et al. (2007) Diverse cellular functions of the Hsp90 molecular chaperone uncovered using systems approaches. Cell 131(1):121-35 PMID:17923092
- Gavin AC, et al. (2006) Proteome survey reveals modularity of the yeast cell machinery. Nature 440(7084):631-6 PMID:16429126
- Krogan NJ, et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 440(7084):637-43 PMID:16554755
- Davierwala AP, et al. (2005) The synthetic genetic interaction spectrum of essential genes. Nat Genet 37(10):1147-52 PMID:16155567
- Salinas K, et al. (2005) Characterization and purification of Saccharomyces cerevisiae RNase MRP reveals a new unique protein component. J Biol Chem 280(12):11352-60 PMID:15637077
- Hazbun TR, et al. (2003) Assigning function to yeast proteins by integration of technologies. Mol Cell 12(6):1353-65 PMID:14690591
- Gavin AC, et al. (2002) Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415(6868):141-7 PMID:11805826
- Houser-Scott F, et al. (2002) Interactions among the protein and RNA subunits of Saccharomyces cerevisiae nuclear RNase P. Proc Natl Acad Sci U S A 99(5):2684-9 PMID:11880623
Regulation Literature
Paper(s) associated with one or more pieces of regulation evidence in SGD, as found on the
Regulation page.
No regulation literature curated.
Post-translational Modifications Literature
Paper(s) associated with one or more pieces of post-translational modifications evidence in SGD.
No post-translational modifications literature curated.
High-Throughput Literature
Paper(s) associated with one or more pieces of high-throughput evidence in SGD.
No high-throughput literature curated.
Download References (.nbib)
- Forster DT, et al. (2022) BIONIC: biological network integration using convolutions. Nat Methods 19(10):1250-1261 PMID:36192463
- Huang Z, et al. (2013) A functional variomics tool for discovering drug-resistance genes and drug targets. Cell Rep 3(2):577-85 PMID:23416056
- Jarolim S, et al. (2013) Saccharomyces cerevisiae genes involved in survival of heat shock. G3 (Bethesda) 3(12):2321-33 PMID:24142923
- Armakola M, et al. (2012) Inhibition of RNA lariat debranching enzyme suppresses TDP-43 toxicity in ALS disease models. Nat Genet 44(12):1302-9 PMID:23104007
- Pir P, et al. (2012) The genetic control of growth rate: a systems biology study in yeast. BMC Syst Biol 6:4 PMID:22244311
- Breslow DK, et al. (2008) A comprehensive strategy enabling high-resolution functional analysis of the yeast genome. Nat Methods 5(8):711-8 PMID:18622397
- MacIsaac KD, et al. (2006) An improved map of conserved regulatory sites for Saccharomyces cerevisiae. BMC Bioinformatics 7:113 PMID:16522208
- Sopko R, et al. (2006) Mapping pathways and phenotypes by systematic gene overexpression. Mol Cell 21(3):319-30 PMID:16455487
- Lum PY, et al. (2004) Discovering modes of action for therapeutic compounds using a genome-wide screen of yeast heterozygotes. Cell 116(1):121-37 PMID:14718172
- Giaever G, et al. (2002) Functional profiling of the Saccharomyces cerevisiae genome. Nature 418(6896):387-91 PMID:12140549