Devos M, et al. (2015) Fission yeast Cdk7 controls gene expression through both its CAK and C-terminal domain kinase activities. Mol Cell Biol 35(9):1480-90 PMID:25691663
Kemmeren P, et al. (2014) Large-scale genetic perturbations reveal regulatory networks and an abundance of gene-specific repressors. Cell 157(3):740-52 PMID:24766815
Srikumar T, et al. (2013) Global analysis of SUMO chain function reveals multiple roles in chromatin regulation. J Cell Biol 201(1):145-63 PMID:23547032
van Bakel H, et al. (2013) A compendium of nucleosome and transcript profiles reveals determinants of chromatin architecture and transcription. PLoS Genet 9(5):e1003479 PMID:23658529
Xu M, et al. (2012) Timing of transcriptional quiescence during gametogenesis is controlled by global histone H3K4 demethylation. Dev Cell 23(5):1059-71 PMID:23123093
Kurat CF, et al. (2011) Restriction of histone gene transcription to S phase by phosphorylation of a chromatin boundary protein. Genes Dev 25(23):2489-501 PMID:22156209
Badis G, et al. (2008) A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Mol Cell 32(6):878-87 PMID:19111667
van Bakel H, et al. (2008) Improved genome-wide localization by ChIP-chip using double-round T7 RNA polymerase-based amplification. Nucleic Acids Res 36(4):e21 PMID:18180247
van Werven FJ, et al. (2008) Cooperative action of NC2 and Mot1p to regulate TATA-binding protein function across the genome. Genes Dev 22(17):2359-69 PMID:18703679
Rustici G, et al. (2007) Global transcriptional responses of fission and budding yeast to changes in copper and iron levels: a comparative study. Genome Biol 8(5):R73 PMID:17477863
van Bakel H, et al. (2005) Gene expression profiling and phenotype analyses of S. cerevisiae in response to changing copper reveals six genes with new roles in copper and iron metabolism. Physiol Genomics 22(3):356-67 PMID:15886332
van de Peppel J, et al. (2005) Mediator expression profiling epistasis reveals a signal transduction pathway with antagonistic submodules and highly specific downstream targets. Mol Cell 19(4):511-22 PMID:16109375
van Bakel H, et al. (2004) Prokaryotic diversity of the Saccharomyces cerevisiae Atx1p-mediated copper pathway. Bioinformatics 20(16):2644-55 PMID:15145814
van de Peppel J, et al. (2003) Monitoring global messenger RNA changes in externally controlled microarray experiments. EMBO Rep 4(4):387-93 PMID:12671682