Jeronimo C, et al. (2025) Genome-Wide Nucleosome Mapping by H3Q85C-Directed Chemical Cleavage in Saccharomyces cerevisiae. Methods Mol Biol 2919:155-177 PMID:40257562
Martinez KP, et al. (2024) Yeast zinc cluster transcription factors involved in the switch from fermentation to respiration show interdependency for DNA binding revealing a novel type of DNA recognition. Nucleic Acids Res 52(5):2242-2259 PMID:38109318
González L, et al. (2023) Adaptive partitioning of a gene locus to the nuclear envelope in Saccharomyces cerevisiae is driven by polymer-polymer phase separation. Nat Commun 14(1):1135 PMID:36854718
González L, et al. (2023) Publisher Correction: Adaptive partitioning of a gene locus to the nuclear envelope in Saccharomyces cerevisiae is driven by polymer-polymer phase separation. Nat Commun 14(1):2315 PMID:37085520
Neumann H, et al. (2023) The Histone Variant H2A.Z C-Terminal Domain Has Locus-Specific Differential Effects on H2A.Z Occupancy and Nucleosome Localization. Microbiol Spectr 11(2):e0255022 PMID:36815792
Jeronimo C, et al. (2021) FACT is recruited to the +1 nucleosome of transcribed genes and spreads in a Chd1-dependent manner. Mol Cell 81(17):3542-3559.e11 PMID:34380014
Saleh MM, et al. (2021) Connection of core and tail Mediator modules restrains transcription from TFIID-dependent promoters. PLoS Genet 17(8):e1009529 PMID:34383744
Collin P, et al. (2019) RNA Polymerase II CTD Tyrosine 1 Is Required for Efficient Termination by the Nrd1-Nab3-Sen1 Pathway. Mol Cell 73(4):655-669.e7 PMID:30639244
Jeronimo C, et al. (2019) Histone Recycling by FACT and Spt6 during Transcription Prevents the Scrambling of Histone Modifications. Cell Rep 28(5):1206-1218.e8 PMID:31365865
Uwimana N, et al. (2017) Bidirectional terminators in Saccharomyces cerevisiae prevent cryptic transcription from invading neighboring genes. Nucleic Acids Res 45(11):6417-6426 PMID:28383698
Jeronimo C and Robert F (2016) Histone chaperones FACT and Spt6 prevent histone variants from turning into histone deviants. Bioessays 38(5):420-6 PMID:26990181
Jeronimo C, et al. (2016) Tail and Kinase Modules Differently Regulate Core Mediator Recruitment and Function In Vivo. Mol Cell 64(3):455-466 PMID:27773677
Steunou AL, et al. (2016) Combined Action of Histone Reader Modules Regulates NuA4 Local Acetyltransferase Function but Not Its Recruitment on the Genome. Mol Cell Biol 36(22):2768-2781 PMID:27550811
Cheng X, et al. (2015) Eaf1 Links the NuA4 Histone Acetyltransferase Complex to Htz1 Incorporation and Regulation of Purine Biosynthesis. Eukaryot Cell 14(6):535-44 PMID:25841019
Gasmi N, et al. (2014) The switch from fermentation to respiration in Saccharomyces cerevisiae is regulated by the Ert1 transcriptional activator/repressor. Genetics 198(2):547-60 PMID:25123508
Jeronimo C and Robert F (2014) Kin28 regulates the transient association of Mediator with core promoters. Nat Struct Mol Biol 21(5):449-55 PMID:24704787
Shahbabian K, et al. (2014) Co-transcriptional recruitment of Puf6 by She2 couples translational repression to mRNA localization. Nucleic Acids Res 42(13):8692-704 PMID:25013181
Woo S, et al. (2013) PING 2.0: an R/Bioconductor package for nucleosome positioning using next-generation sequencing data. Bioinformatics 29(16):2049-50 PMID:23786769
Bataille AR, et al. (2012) A universal RNA polymerase II CTD cycle is orchestrated by complex interplays between kinase, phosphatase, and isomerase enzymes along genes. Mol Cell 45(2):158-70 PMID:22284676
Soontorngun N, et al. (2012) Genome-wide location analysis reveals an important overlap between the targets of the yeast transcriptional regulators Rds2 and Adr1. Biochem Biophys Res Commun 423(4):632-7 PMID:22687600
Ivanovska I, et al. (2011) Control of chromatin structure by spt6: different consequences in coding and regulatory regions. Mol Cell Biol 31(3):531-41 PMID:21098123
Poschmann J, et al. (2011) The peptidyl prolyl isomerase Rrd1 regulates the elongation of RNA polymerase II during transcriptional stresses. PLoS One 6(8):e23159 PMID:21887235
Drouin S, et al. (2010) DSIF and RNA polymerase II CTD phosphorylation coordinate the recruitment of Rpd3S to actively transcribed genes. PLoS Genet 6(10):e1001173 PMID:21060864
Bataille AR and Robert F (2009) Profiling genome-wide histone modifications and variants by ChIP-chip on tiling microarrays in S. cerevisiae. Methods Mol Biol 543:267-79 PMID:19378172
Rufiange A, et al. (2007) Genome-wide replication-independent histone H3 exchange occurs predominantly at promoters and implicates H3 K56 acetylation and Asf1. Mol Cell 27(3):393-405 PMID:17679090
Soontorngun N, et al. (2007) Regulation of gluconeogenesis in Saccharomyces cerevisiae is mediated by activator and repressor functions of Rds2. Mol Cell Biol 27(22):7895-905 PMID:17875938
Larochelle M, et al. (2006) Oxidative stress-activated zinc cluster protein Stb5 has dual activator/repressor functions required for pentose phosphate pathway regulation and NADPH production. Mol Cell Biol 26(17):6690-701 PMID:16914749
Nourani A, et al. (2006) Evidence that Spt2/Sin1, an HMG-like factor, plays roles in transcription elongation, chromatin structure, and genome stability in Saccharomyces cerevisiae. Mol Cell Biol 26(4):1496-509 PMID:16449659
Guillemette B, et al. (2005) Variant histone H2A.Z is globally localized to the promoters of inactive yeast genes and regulates nucleosome positioning. PLoS Biol 3(12):e384 PMID:16248679
Barlev NA, et al. (2003) A novel human Ada2 homologue functions with Gcn5 or Brg1 to coactivate transcription. Mol Cell Biol 23(19):6944-57 PMID:12972612
Ng HH, et al. (2003) Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity. Mol Cell 11(3):709-19 PMID:12667453
Adam M, et al. (2001) H2A.Z is required for global chromatin integrity and for recruitment of RNA polymerase II under specific conditions. Mol Cell Biol 21(18):6270-9 PMID:11509669