Schindler D, et al. (2023) Design, construction, and functional characterization of a tRNA neochromosome in yeast. Cell 186(24):5237-5253.e22 PMID:37944512
Batrakou DG, et al. (2020) DNA copy-number measurement of genome replication dynamics by high-throughput sequencing: the sort-seq, sync-seq and MFA-seq family. Nat Protoc 15(3):1255-1284 PMID:32051615
Hoggard T, et al. (2020) Sir2 mitigates an intrinsic imbalance in origin licensing efficiency between early- and late-replicating euchromatin. Proc Natl Acad Sci U S A 117(25):14314-14321 PMID:32513739
Bazarova A, et al. (2019) Bayesian inference of origin firing time distributions, origin interference and licencing probabilities from Next Generation Sequencing data. Nucleic Acids Res 47(5):2229-2243 PMID:30859196
Müller CA, et al. (2019) Capturing the dynamics of genome replication on individual ultra-long nanopore sequence reads. Nat Methods 16(5):429-436 PMID:31011185
Batrakou DG, et al. (2018) Rapid high-resolution measurement of DNA replication timing by droplet digital PCR. Nucleic Acids Res 46(19):e112 PMID:29986073
Kedziora S, et al. (2018) Rif1 acts through Protein Phosphatase 1 but independent of replication timing to suppress telomere extension in budding yeast. Nucleic Acids Res 46(8):3993-4003 PMID:29529242
Hawkins M, et al. (2013) High-resolution replication profiles define the stochastic nature of genome replication initiation and termination. Cell Rep 5(4):1132-41 PMID:24210825
Hoggard T, et al. (2013) A Link between ORC-origin binding mechanisms and origin activation time revealed in budding yeast. PLoS Genet 9(9):e1003798 PMID:24068963
Natsume T, et al. (2013) Kinetochores coordinate pericentromeric cohesion and early DNA replication by Cdc7-Dbf4 kinase recruitment. Mol Cell 50(5):661-74 PMID:23746350
Newman TJ, et al. (2013) Replisome stall events have shaped the distribution of replication origins in the genomes of yeasts. Nucleic Acids Res 41(21):9705-18 PMID:23963700
Saner N, et al. (2013) Stochastic association of neighboring replicons creates replication factories in budding yeast. J Cell Biol 202(7):1001-12 PMID:24062338
Guttery DS, et al. (2012) A putative homologue of CDC20/CDH1 in the malaria parasite is essential for male gamete development. PLoS Pathog 8(2):e1002554 PMID:22383885
Müller CA and Nieduszynski CA (2012) Conservation of replication timing reveals global and local regulation of replication origin activity. Genome Res 22(10):1953-62 PMID:22767388
Nieduszynski CA and Liti G (2011) From sequence to function: Insights from natural variation in budding yeasts. Biochim Biophys Acta 1810(10):959-66 PMID:21320572
Nieduszynski CA and Donaldson AD (2009) Detection of replication origins using comparative genomics and recombinational ARS assay. Methods Mol Biol 521:295-313 PMID:19563113
Shor E, et al. (2009) The origin recognition complex interacts with a subset of metabolic genes tightly linked to origins of replication. PLoS Genet 5(12):e1000755 PMID:19997491
Chang F, et al. (2008) Analysis of chromosome III replicators reveals an unusual structure for the ARS318 silencer origin and a conserved WTW sequence within the origin recognition complex binding site. Mol Cell Biol 28(16):5071-81 PMID:18573888
Nieduszynski CA, et al. (2006) Genome-wide identification of replication origins in yeast by comparative genomics. Genes Dev 20(14):1874-9 PMID:16847347
Nieduszynski CA, et al. (2005) The requirement of yeast replication origins for pre-replication complex proteins is modulated by transcription. Nucleic Acids Res 33(8):2410-20 PMID:15860777