Kim N, et al. (2025) Autonomous chemo-metabolic construction of anisotropic cell-in-shell nanobiohybrids in enzyme-powered cell microrobots. Sci Adv 11(26):eadu5451 PMID:40561036
Grimes B, et al. (2023) The Properties and Domain Requirements for Phase Separation of the Sup35 Prion Protein In Vivo. Biomolecules 13(9) PMID:37759770
Stanford KE, et al. (2023) Overexpression of Hsp104 by Causing Dissolution of the Prion Seeds Cures the Yeast [PSI+] Prion. Int J Mol Sci 24(13) PMID:37446010
Stokdyk K, et al. (2021) The activity of yeast Apn2 AP endonuclease at uracil-derived AP sites is dependent on the major carbon source. Curr Genet 67(2):283-294 PMID:33386486
Klein HL, et al. (2019) Guidelines for DNA recombination and repair studies: Cellular assays of DNA repair pathways. Microb Cell 6(1):1-64 PMID:30652105
Owiti N, et al. (2018) Unscheduled DNA synthesis leads to elevated uracil residues at highly transcribed genomic loci in Saccharomyces cerevisiae. PLoS Genet 14(7):e1007516 PMID:30016327
Lopez CR, et al. (2017) Yeast Sub1 and human PC4 are G-quadruplex binding proteins that suppress genome instability at co-transcriptionally formed G4 DNA. Nucleic Acids Res 45(10):5850-5862 PMID:28369605
Owiti N, et al. (2017) Def1 and Dst1 play distinct roles in repair of AP lesions in highly transcribed genomic regions. DNA Repair (Amst) 55:31-39 PMID:28521214
Yadav P, et al. (2016) The role of topoisomerase I in suppressing genome instability associated with a highly transcribed guanine-rich sequence is not restricted to preventing RNA:DNA hybrid accumulation. Nucleic Acids Res 44(2):718-29 PMID:26527723
Cho JE, et al. (2015) Topoisomerase 1-dependent deletions initiated by incision at ribonucleotides are biased to the non-transcribed strand of a highly activated reporter. Nucleic Acids Res 43(19):9306-13 PMID:26271994
Williams JD, et al. (2015) Sites of instability in the human TCF3 (E2A) gene adopt G-quadruplex DNA structures in vitro. Front Genet 6:177 PMID:26029241
Yadav P, et al. (2014) Topoisomerase I plays a critical role in suppressing genome instability at a highly transcribed G-quadruplex-forming sequence. PLoS Genet 10(12):e1004839 PMID:25473964
Kim N, et al. (2013) RNA∶DNA hybrids initiate quasi-palindrome-associated mutations in highly transcribed yeast DNA. PLoS Genet 9(11):e1003924 PMID:24244191
Kim N and Jinks-Robertson S (2011) Guanine repeat-containing sequences confer transcription-dependent instability in an orientation-specific manner in yeast. DNA Repair (Amst) 10(9):953-60 PMID:21813340
Kim N, et al. (2011) The dCMP transferase activity of yeast Rev1 is biologically relevant during the bypass of endogenously generated AP sites. DNA Repair (Amst) 10(12):1262-71 PMID:22024240
Lippert MJ, et al. (2011) Role for topoisomerase 1 in transcription-associated mutagenesis in yeast. Proc Natl Acad Sci U S A 108(2):698-703 PMID:21177427
Kim N and Jinks-Robertson S (2010) Abasic sites in the transcribed strand of yeast DNA are removed by transcription-coupled nucleotide excision repair. Mol Cell Biol 30(13):3206-15 PMID:20421413
Kim N, et al. (2007) Transcription-associated mutagenesis in yeast is directly proportional to the level of gene expression and influenced by the direction of DNA replication. DNA Repair (Amst) 6(9):1285-96 PMID:17398168
Cho SW, et al. (2001) Structure of aspergillopepsin I from Aspergillus phoenicis: variations of the S1'-S2 subsite in aspartic proteinases. Acta Crystallogr D Biol Crystallogr 57(Pt 7):948-56 PMID:11418762