Biological systems in general operates out of equilibrium which demands the requirement for constant supply of energy due to non-equilibrium entropy production. The thermodynamic uncertainty relation (TUR) essentially imposes a bound on minimum current fluctuation the system can have given a entropy production rate. The fluctuation eventually impacts the signal to noise ratio imposing an upper bound on information transmission accuracy. In this study, we explored the role of TUR on the information transmission capacity of a set of cellular signaling systems using a coupled mathematical and machine learning approaches to experimental data in yeast under several stress conditions. Cell signaling systems are involved in sensing the changes in environment by activating a set of transcription factors (TF) which typically diffuse inside the nucleus to trigger transcription of the required genes. However, the inherent stochasticity of the biochemical pathways associated with signaling processes severely limits the accuracy of estimating the environmental input by the transcription factors. Application of TUR reveals a general picture about the working principle of the transcription factors. We found that the the activation followed by biased diffusion of transcription factors (TF) towards the nucleus triggers entropy production which amplifies magnitude of the overall TF currents towards the nucleus as well as reduces the fluctuations. These outcomes significantly improve the accuracy of information transmission carried out by the transcription factors following the bound imposed by TUR. Thus, experimental observations coupled with TUR based theoretical models demonstrate the role of thermodynamic fluctuation and entropy production on cellular information processing.

• PMID: 41628569
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Journal Article

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Verma S, R VS, Ghosh B

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