Over the past two decades, genome-wide collections of mutants, or libraries, have revolutionized the fields of systems and cell biology by enabling systematic and high-throughput interrogation of gene and protein function. This has been especially prominent in the model yeast Saccharomyces cerevisiae. The unique genetic properties of yeast, combined with efficient genome engineering tools, have facilitated the creation of a large number of comprehensive collections of strains with targeted gene deletions, mutations, overexpressions, regulatable promoters, and protein tagging. These resources have enabled large-scale studies of cellular phenotypes, genetic and drug interactions, protein localization, protein-protein interactions, and much more. This review provides a comprehensive overview of the available systematic yeast libraries, highlighting their design, applications, and transformative impact on functional genomics. We detail how successive generations of libraries have addressed key challenges. Highlighting future applications, we discuss the potential integration of advanced fluorescent tools and machine learning approaches that promise to shape the next generation of libraries and establish yeast as a blueprint for systematic, dynamic, and predictive cell biology.
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| Evidence ID | Analyze ID | Gene/Complex | Systematic Name/Complex Accession | Qualifier | Gene Ontology Term ID | Gene Ontology Term | Aspect | Annotation Extension | Evidence | Method | Source | Assigned On | Reference |
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| Evidence ID | Analyze ID | Gene | Gene Systematic Name | Phenotype | Experiment Type | Experiment Type Category | Mutant Information | Strain Background | Chemical | Details | Reference |
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| Evidence ID | Analyze ID | Gene | Gene Systematic Name | Disease Ontology Term | Disease Ontology Term ID | Qualifier | Evidence | Method | Source | Assigned On | Reference |
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| Evidence ID | Analyze ID | Regulator | Regulator Systematic Name | Target | Target Systematic Name | Direction | Regulation of | Happens During | Regulator Type | Direction | Regulation Of | Happens During | Method | Evidence | Strain Background | Reference |
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| Site | Modification | Modifier | Source | Reference |
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| Evidence ID | Analyze ID | Interactor | Interactor Systematic Name | Interactor | Interactor Systematic Name | Allele | Assay | Annotation | Action | Phenotype | SGA score | P-value | Source | Reference | Note |
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| Evidence ID | Analyze ID | Interactor | Interactor Systematic Name | Interactor | Interactor Systematic Name | Assay | Annotation | Action | Modification | Source | Reference | Note |
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| Complement ID | Locus ID | Gene | Species | Gene ID | Strain background | Direction | Details | Source | Reference |
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| Evidence ID | Analyze ID | Dataset | Description | Keywords | Number of Conditions | Reference |
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