Reference: Schmidt SL, et al. (2001) ATP utilization by yeast replication factor C. IV. RFC ATP-binding mutants show defects in DNA replication, DNA repair, and checkpoint regulation. J Biol Chem 276(37):34792-800

Reference Help

Abstract


Replication factor C is required to load proliferating cell nuclear antigen onto primer-template junctions, using the energy of ATP hydrolysis. Four of the five RFC genes have consensus ATP-binding motifs. To determine the relative importance of these sites for proper DNA metabolism in the cell, the conserved lysine in the Walker A motif of RFC1, RFC2, RFC3, or RFC4 was mutated to either arginine or glutamic acid. Arginine mutations in all RFC genes tested permitted cell growth, although poor growth was observed for rfc2-K71R. A glutamic acid substitution resulted in lethality in RFC2 and RFC3 but not in RFC1 or RFC4. Most double mutants combining mutations in two RFC genes were inviable. Except for the rfc1-K359R and rfc4-K55E mutants, which were phenotypically similar to wild type in every assay, the mutants were sensitive to DNA-damaging agents. The rfc2-K71R and rfc4-K55R mutants show checkpoint defects, most likely in the intra-S phase checkpoint. Regulation of the damage-inducible RNR3 promoter was impaired in these mutants, and phosphorylation of Rad53p in response to DNA damage was specifically defective when cells were in S phase. No dramatic defects in telomere length regulation were detected in the mutants. These data demonstrate that the ATP binding function of RFC2 is important for both DNA replication and checkpoint function and, for the first time, that RFC4 also plays a role in checkpoint regulation.

Reference Type
Journal Article | Research Support, U.S. Gov't, P.H.S.
Authors
Schmidt SL, Pautz AL, Burgers PM
Primary Lit For
Additional Lit For
Review For

Phenotype Annotations 8 entries for 2 genes


Increase the total number of rows showing on this page using the pull-down located below the table, or use the page scroll at the table's top right to browse through the table's pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table; click on the small "i" buttons located within a cell for an annotation to view further details.

GenePhenotypeExperiment TypeMutant InformationStrain BackgroundChemicalDetails
RFC4cold sensitivity: increased
classical geneticsconditional
Allele: rfc4R

K55R

W303
RFC2resistance to chemicals: decreased
classical geneticsreduction of function
Allele: rfc2R

K71R

W3030.02% methyl methanesulfonate
RFC2resistance to chemicals: decreased
classical geneticsreduction of function
Allele: rfc2R

K71R

W303110 mM hydroxyurea
RFC4resistance to chemicals: decreased
classical geneticsconditional
Allele: rfc4R

K55R

W3030.02% methyl methanesulfonateTemperature: permissive temperature, 30 °C
RFC4resistance to chemicals: decreased
classical geneticsconditional
Allele: rfc4R

K55R

W303110 mM hydroxyureaTemperature: permissive temperature, 30 °C
RFC2UV resistance: decreased
classical geneticsreduction of function
Allele: rfc2R

K71R

W303Details: 100 J/m2
RFC4UV resistance: decreased
classical geneticsconditional
Allele: rfc4R

K55R

W303Temperature: permissive temperature, 30 °C
Details: 100 J/m2
RFC2vegetative growth: decreased rate
classical geneticsreduction of function
Allele: rfc2R

K71R

W303
Showing 1 to 8 of 8 entries

Interaction Annotations


Genetic Interactions

Increase the total number of rows showing on this page by using the pull-down located below the table, or use the page scroll at the table's top right to browse through the table's pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table; click on the small "i" buttons located within a cell for an annotation to view further details about experiment type and any other genes involved in the interaction.

Interactor Interactor Allele Assay Annotation Action Phenotype SGA score P-value Source Reference

Physical Interactions

Increase the total number of rows showing on this page by using the pull-down located below the table, or use the page scroll at the table's top right to browse through the table's pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table; click on the small "i" buttons located within a cell for an annotation to view further details about experiment type and any other genes involved in the interaction.

Interactor Interactor Assay Annotation Action Modification Source Reference