Reference: Isono E, et al. (2004) Rpn7 Is required for the structural integrity of the 26 S proteasome of Saccharomyces cerevisiae. J Biol Chem 279(26):27168-76

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Abstract


Rpn7 is one of the lid subunits of the 26 S proteasome regulatory particle. The RPN7 gene is known to be essential, but its function remains to be elucidated. To explore the function of Rpn7, we isolated and characterized temperature-sensitive rpn7 mutants. All of the rpn7 mutants obtained accumulated poly-ubiquitinated proteins when grown at the restrictive temperature. The N-end rule substrate (Ub-Arg-beta-galactosidase), the UFD pathway substrate (Ub-Pro-beta-galactosidase), and cell cycle regulators (Pds1 and Clb2) were found to be stabilized in experiments using one of the rpn7 mutants termed rpn7-3 at the restrictive temperature, indicating its defect in the ubiquitin-proteasome pathway. Subsequent analysis of the structure of the 26 S proteasome in rpn7-3 cells suggested that the defect was in the assembly of the 26 S holoenzyme. The most striking characteristic of the proteasome of the rpn7-3 mutant was that a lid subcomplex affinity-purified from the rpn7-3 cells grown at the restrictive temperature contained only 5 of the 8 lid components, a phenomenon that has not been reported in the previously isolated lid mutants. From these results, we concluded that Rpn7 is required for the integrity of the 26 S complex by establishing a correct lid structure.

Reference Type
Journal Article | Research Support, Non-U.S. Gov't
Authors
Isono E, Saeki Y, Yokosawa H, Toh-e A
Primary Lit For
RPN7
Additional Lit For
CLB2 | PDS1 | rpn7-3 | rpn7-1 | rpn7-2 | rpn7-4 | rpn7-5 | rpn7-6

Gene Ontology Annotations 1 entry for 1 gene


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Gene/ComplexQualifierGene Ontology TermAnnotation ExtensionEvidenceSourceAssigned On
RPN7enablesstructural molecule activityIMPSGD2013-08-07
Showing 1 to 1 of 1 entries

Phenotype Annotations 16 entries for 1 gene


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GenePhenotypeExperiment TypeMutant InformationStrain BackgroundChemicalDetails
RPN7cell cycle progression through the G2/M phase transition: abnormal
classical geneticsconditional
Allele: rpn7-3

D95G, K188R, S240P, S349P, D382G

W303Temperature: elevated temperature, 37 °C
RPN7cell size: increased
classical geneticsconditional
Allele: rpn7-3

D95G, K188R, S240P, S349P, D382G

W303Temperature: elevated temperature, 37 °C
Details: large, budded cells with one nucleus and short spindle
RPN7heat sensitivity: increased
classical geneticsconditional
Allele: rpn7-6

Q143R, S240P, S273P, L368Q

W303Temperature: elevated temperature, 37 °C
RPN7heat sensitivity: increased
classical geneticsconditional
Allele: rpn7-2

M197T, S240P, S303C, K336E

W303Temperature: elevated temperature, 37 °C
RPN7heat sensitivity: increased
classical geneticsconditional
Allele: rpn7-3

D95G, K188R, S240P, S349P, D382G

W303Temperature: elevated temperature, 37 °C
RPN7heat sensitivity: increased
classical geneticsconditional
Allele: rpn7-4

S240P, Y304H, F305S

W303Temperature: elevated temperature, 37 °C
RPN7heat sensitivity: increased
classical geneticsconditional
Allele: rpn7-5

T164A, S240P, D265G, T347A, D367G

W303Temperature: elevated temperature, 37 °C
RPN7heat sensitivity: increased
classical geneticsconditional
Allele: rpn7-1

S240P, Y304H, R334G

W303Temperature: elevated temperature, 37 °C
RPN7protein/peptide accumulation: increased
Reporter: Clb2p
classical geneticsconditional
Allele: rpn7-3

D95G, K188R, S240P, S349P, D382G

W303Temperature: elevated temperature, 37 °C
Treatment: alpha-factor block release, 10 ug/ml
RPN7protein/peptide accumulation: increased
Reporter: Pds1p
classical geneticsconditional
Allele: rpn7-3

D95G, K188R, S240P, S349P, D382G

W303Temperature: elevated temperature, 37 °C
Treatment: alpha-factor block release, 10 ug/ml
Showing 1 to 10 of 16 entries

Interaction Annotations


Genetic Interactions

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Interactor Interactor Allele Assay Annotation Action Phenotype SGA score P-value Source Reference

Physical Interactions 10 entries for 5 genes

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InteractorInteractorAssayAnnotationActionModification

rpn7-3 background

RPN11RPN5Affinity Capture-MSmanually curatedHit-BaitNo Modification

rpn7-3 background

RPN11RPN6Affinity Capture-MSmanually curatedHit-BaitNo Modification

rpn7-3 background

RPN11RPN8Affinity Capture-MSmanually curatedHit-BaitNo Modification

rpn7-3 background

RPN11RPN9Affinity Capture-MSmanually curatedHit-BaitNo Modification

rpn7-3 background

RPN5RPN8Affinity Capture-MSmanually curatedBait-HitNo Modification

rpn7-3 background

RPN5RPN9Affinity Capture-MSmanually curatedBait-HitNo Modification

rpn7-3 background

RPN6RPN5Affinity Capture-MSmanually curatedHit-BaitNo Modification

rpn7-3 background

RPN6RPN8Affinity Capture-MSmanually curatedBait-HitNo Modification

rpn7-3 background

RPN6RPN9Affinity Capture-MSmanually curatedBait-HitNo Modification

rpn7-3 background

RPN9RPN8Affinity Capture-MSmanually curatedHit-BaitNo Modification
Showing 1 to 10 of 10 entries