Reference: Osterberg R, et al. (1975) Small-angle x-ray scattering study of the interaction between lysine transfer RNA ligase from yeast and transfer RNA. J Mol Biol 99(3):383-93

Reference Help

Abstract


The main complex formed in solution between lysine:tRNA ligase from yeast and tRNA is composed of two enzyme molecules and one molecule of tRNA as shown by an equilibrium analysis of small angle X-ray scattering data recorded at 21 deg C in the pH range 6.6 to 7.4. The stability of the complex with both cognate and non-cognate tRNA decreases with increasing Mg 2+ concentration. The two types of complexes differ, however, in as much as the stability of the non-cognate complex is independent of pH while the stability of the cognate complex decreases with increasing pH. Analysis of the small-angle X-ray scattering from the complex between enzyme and cognate tRNA gave a radius of gyration of 57.4 A, a molecular weight of 236,000 and a volume of 600,000 A(3), in agreement with the theoretical values calculated for a complex containing two enzyme molecules and one tRNA (molecular weight 252,600 and volume 631,000 A(3). A comparison of the experimental data with theoretical scattering curves computed for different triaxial bodies suggests that the two ellipsoid protein molecules interact with their longest semi-axes at right angles to each other, and that within the angle formed, partly engulfed by the protein ellipsoids, is the supposedly L-shaped tRNA molecule.

Reference Type
Journal Article
Authors
Osterberg R, Sjöberg B, Rymo L, Lagerkvist U
Primary Lit For
Additional Lit For
Review For

Gene Ontology Annotations


Increase the total number of rows showing on this page using the pull-down located below the table, or use the page scroll at the table's top right to browse through the table's pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table.

Gene/Complex Qualifier Gene Ontology Term Aspect Annotation Extension Evidence Method Source Assigned On Reference

Phenotype Annotations


Increase the total number of rows showing on this page using the pull-down located below the table, or use the page scroll at the table's top right to browse through the table's pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table; click on the small "i" buttons located within a cell for an annotation to view further details.

Gene Phenotype Experiment Type Mutant Information Strain Background Chemical Details Reference

Disease Annotations


Increase the total number of rows showing on this page using the pull-down located below the table, or use the page scroll at the table's top right to browse through the table's pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table.

Gene Disease Ontology Term Qualifier Evidence Method Source Assigned On Reference

Regulation Annotations


Increase the total number of rows displayed on this page using the pull-down located below the table, or use the page scroll at the table's top right to browse through the table's pages; use the arrows to the right of a column header to sort by that column; to filter the table by a specific experiment type, type a keyword into the Filter box (for example, “microarray”); download this table as a .txt file using the Download button or click Analyze to further view and analyze the list of target genes using GO Term Finder, GO Slim Mapper, or SPELL.

Regulator Target Direction Regulation Of Happens During Method Evidence

Post-translational Modifications


Increase the total number of rows showing on this page by using the pull-down located below the table, or use the page scroll at the table's top right to browse through its pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table.

Site Modification Modifier Reference

Interaction Annotations


Genetic Interactions

Increase the total number of rows showing on this page by using the pull-down located below the table, or use the page scroll at the table's top right to browse through the table's pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table; click on the small "i" buttons located within a cell for an annotation to view further details about experiment type and any other genes involved in the interaction.

Interactor Interactor Allele Assay Annotation Action Phenotype SGA score P-value Source Reference

Physical Interactions

Increase the total number of rows showing on this page by using the pull-down located below the table, or use the page scroll at the table's top right to browse through the table's pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table; click on the small "i" buttons located within a cell for an annotation to view further details about experiment type and any other genes involved in the interaction.

Interactor Interactor Assay Annotation Action Modification Source Reference

Functional Complementation Annotations


Increase the total number of rows showing on this page by using the pull-down located below the table, or use the page scroll at the table's top right to browse through its pages; use the arrows to the right of a column header to sort by that column; filter the table using the "Filter" box at the top of the table.

Gene Species Gene ID Strain background Direction Details Source Reference