Restriction Fragments for SNR9/snR9



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The currently selected gene/sequence is :

SNR9/snR9 on chromosome XV from coordinates 408134 to 407948.

The sequence you have requested is oriented with respect to the Crick (bottom) strand. Thus, the chromosomal coordinate of the beginning of the gene or sequence is larger than that of the end. The sequence shown here is the 5'-3' direction of the Crick strand and is the reverse complement of the Watson (top) strand.

seqfile=/share/crumb/www-data/html/tmp/gcgseq.tmp.2.16022.2

Start End Strand Enzyme_name Restriction_site 5prime 3prime 5primerev 3primerev 50 53 + MnlI CCTC 60 59 . . 57 60 + CviJI RGCY 58 58 . . 58 68 + MwoI GCNNNNNNNGC 64 61 . . 61 65 + TspDTI ATGAA 76 74 . . 56 61 - TsoI TARCCA 46 44 . . 69 74 + Hpy166II GTNNAC 71 71 . . 76 80 + TspGWI ACGGA 91 89 . . 79 83 - BsmAI GTCTC 73 77 . . 93 96 + TspEI AATT 92 96 . . 106 109 + CviJI RGCY 107 107 . . 119 123 - MboII GAAGA 111 110 . . 122 126 - MboII GAAGA 114 113 . . 125 129 - MboII GAAGA 117 116 . . 129 132 + FatI CATG 128 132 . . 129 132 + NlaIII CATG 132 128 . . 129 132 + CviAII CATG 129 131 . . 127 131 - TspDTI ATGAA 117 115 . . 133 137 + HphI GGTGA 145 144 . . 131 136 - TaqII CACCCA 121 119 . . 136 139 - MnlI CCTC 129 128 . . 141 144 + MseI TTAA 141 143 . . 144 147 + SetI ASST 147 143 . . 144 147 + CviJI RGCY 145 145 . . 144 147 + AluI AGCT 145 145 . . 148 153 + EcoRV GATATC 150 150 . . 152 157 + Hpy178III* TCNNGA 153 155 . . 161 164 + SetI ASST 164 160 . . 174 178 + Hin4II* CCTTC 184 183 . . 177 181 + Hpy188I TCNGA 179 178 . . 175 180 - Eco57MI CTGRAG 160 158 . . 175 180 - Eco57I CTGAAG 160 158 . . #--------------------------------------- # # # AluI: # [AGCT] # 42 145 # # BsmAI: # [GTCTC] # 73 114 # # CviAII: # [CATG] # 58 129 # # CviJI: # [RGCY] # 38 42 49 58 # # Eco57I: # [CTGAAG] # 27 160 # # Eco57MI: # [CTGRAG] # 27 160 # # EcoRV: # [GATATC] # 37 150 # # FatI: # [CATG] # 59 128 # # Hin4II*: # [CCTTC] # 3 184 # # HphI: # [GGTGA] # 42 145 # # Hpy166II: # [GTNNAC] # 71 116 # # Hpy178III*: # [TCNNGA] # 34 153 # # Hpy188I: # [TCNGA] # 8 179 # # MboII: # [GAAGA] # 3 3 70 111 # # MnlI: # [CCTC] # 58 60 69 # # MseI: # [TTAA] # 46 141 # # MwoI: # [GCNNNNNNNGC] # 64 123 # # NlaIII: # [CATG] # 55 132 # # SetI: # [ASST] # 17 23 147 # # TaqII: # [CACCCA] # 66 121 # # TsoI: # [TARCCA] # 46 141 # # TspDTI: # [ATGAA] # 41 70 76 # # TspEI: # [AATT] # 92 95 # # TspGWI: # [ACGGA] # 91 96 # #--------------------------------------- #--------------------------------------- # Total_sequences: 1 # Total_length: 187 # Reported_sequences: 1 # Reported_hitcount: 31 #---------------------------------------