Restriction Fragments for SNR7-L/snR7-L



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The currently selected gene/sequence is :

SNR7-L/snR7-L on chromosome VII from coordinates 939672 to 939459.

The sequence you have requested is oriented with respect to the Crick (bottom) strand. Thus, the chromosomal coordinate of the beginning of the gene or sequence is larger than that of the end. The sequence shown here is the 5'-3' direction of the Crick strand and is the reverse complement of the Watson (top) strand.

seqfile=/share/crumb/www-data/html/tmp/gcgseq.tmp.2.24218.2

Start End Strand Enzyme_name Restriction_site 5prime 3prime 5primerev 3primerev 3 7 + BlsI GCNGC 5 4 . . 3 7 + BisI GCNGC 4 5 . . 3 7 + BbvI GCAGC 15 19 . . 3 7 + TseI GCWGC 3 6 . . 5 8 + SetI ASST 8 4 . . 5 8 + CviJI RGCY 6 6 . . 5 8 + AluI AGCT 6 6 . . 14 17 + DpnI GATC 15 15 . . 14 17 + BstKTI GATC 16 14 . . 14 17 + MboI GATC 13 17 . . 21 26 + EciI GGCGGA 37 35 . . 22 25 - AciI CCGC 22 24 . . 25 28 - MnlI CCTC 18 17 . . 30 33 + SetI ASST 33 29 . . 29 32 - MnlI CCTC 22 21 . . 32 37 + Hpy166II GTNNAC 34 34 . . 32 37 + HindII GTYRAC 34 34 . . 39 44 + Hpy178III* TCNNGA 40 42 . . 40 51 + CspCI CAANNNNNGTGG 28 26 63 61 45 49 + Tsp4CI* ACNGT 47 46 . . 50 54 + BmgT120I GGNCC 51 52 . . 50 54 + AsuI* GGNCC 50 53 . . 51 54 + CviJI RGCY 52 52 . . 51 54 + HaeIII GGCC 52 52 . . 64 69 + SfeI* CTRYAG 64 68 . . 73 78 + PsiI TTATAA 75 75 . . 83 86 + FatI CATG 82 86 . . 83 86 + NlaIII CATG 86 82 . . 83 86 + CviAII CATG 83 85 . . 107 111 + BccI CCATC 115 116 . . 108 117 + MslI CAYNNNNRTG 112 112 . . 111 115 + BssKI CCNGG 110 115 . . 111 114 + HpaII CCGG 111 113 . . 111 115 + ScrFI CCNGG 112 113 . . 111 115 + CauII* CCSGG 112 113 . . 108 112 - FokI GGATG 94 98 . . 108 112 - BseGI GGATG 107 105 . . 120 124 + BsmAI GTCTC 125 129 . . 134 137 + SetI ASST 137 133 . . 140 143 + SetI ASST 143 139 . . 140 143 + CviJI RGCY 141 141 . . 140 143 + AluI AGCT 141 141 . . 148 152 + MaeIII GTNAC 147 152 . . 145 149 - TspGWI ACGGA 135 133 . . 151 155 + Tsp4CI* ACNGT 153 152 . . 157 160 + CviJI RGCY 158 158 . . 158 163 + Cac8I GCNNGC 160 160 . . 207 210 - MnlI CCTC 200 199 . . #--------------------------------------- # # # AciI: # [CCGC] # 22 192 # # AluI: # [AGCT] # 6 73 135 # # AsuI*: # [GGNCC] # 50 164 # # BbvI: # [GCAGC] # 15 199 # # BccI: # [CCATC] # 99 115 # # BisI: # [GCNGC] # 4 210 # # BlsI: # [GCNGC] # 5 209 # # BmgT120I: # [GGNCC] # 51 163 # # BseGI: # [GGATG] # 107 107 # # BsmAI: # [GTCTC] # 89 125 # # BssKI: # [CCNGG] # 104 110 # # BstKTI: # [GATC] # 16 198 # # Cac8I: # [GCNNGC] # 54 160 # # CauII*: # [CCSGG] # 102 112 # # CspCI: # [CAANNNNNGTGG] # 28 35 151 # # CviAII: # [CATG] # 83 131 # # CviJI: # [RGCY] # 6 17 46 56 89 # # DpnI: # [GATC] # 15 199 # # EciI: # [GGCGGA] # 37 177 # # FatI: # [CATG] # 82 132 # # FokI: # [GGATG] # 94 120 # # HaeIII: # [GGCC] # 52 162 # # HindII: # [GTYRAC] # 34 180 # # HpaII: # [CCGG] # 103 111 # # Hpy166II: # [GTNNAC] # 34 180 # # Hpy178III*: # [TCNNGA] # 40 174 # # MaeIII: # [GTNAC] # 67 147 # # MboI: # [GATC] # 13 201 # # MnlI: # [CCTC] # 4 14 18 178 # # MslI: # [CAYNNNNRTG] # 102 112 # # NlaIII: # [CATG] # 86 128 # # PsiI: # [TTATAA] # 75 139 # # ScrFI: # [CCNGG] # 102 112 # # SetI: # [ASST] # 6 8 25 71 104 # # SfeI*: # [CTRYAG] # 64 150 # # TseI: # [GCWGC] # 3 211 # # Tsp4CI*: # [ACNGT] # 47 61 106 # # TspGWI: # [ACGGA] # 79 135 # #--------------------------------------- #--------------------------------------- # Total_sequences: 1 # Total_length: 214 # Reported_sequences: 1 # Reported_hitcount: 48 #---------------------------------------