Restriction Fragments for SNR62/snR62



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The currently selected gene/sequence is :

SNR62/snR62 on chromosome XV from coordinates 409864 to 409765.

The sequence you have requested is oriented with respect to the Crick (bottom) strand. Thus, the chromosomal coordinate of the beginning of the gene or sequence is larger than that of the end. The sequence shown here is the 5'-3' direction of the Crick strand and is the reverse complement of the Watson (top) strand.

seqfile=/share/crumb/www-data/html/tmp/gcgseq.tmp.2.19206.2

Start End Strand Enzyme_name Restriction_site 5prime 3prime 5primerev 3primerev 8 12 + TspDTI ATGAA 23 21 . . 10 15 + ApoI RAATTY 10 14 . . 11 14 + TspEI AATT 10 14 . . 40 44 + Hpy188I TCNGA 42 41 . . 44 47 + TspEI AATT 43 47 . . 45 50 + VspI ATTAAT 46 48 . . 46 49 + MseI TTAA 46 48 . . 51 54 + SetI ASST 54 50 . . 51 54 + CviJI RGCY 52 52 . . 51 54 + AluI AGCT 52 52 . . 63 68 + PsiI TTATAA 65 65 . . 71 75 + MboII GAAGA 83 82 . . 91 94 + TspEI AATT 90 94 . . 94 98 + Hpy188I TCNGA 96 95 . . #--------------------------------------- # # # AluI: # [AGCT] # 48 52 # # ApoI: # [RAATTY] # 10 90 # # CviJI: # [RGCY] # 48 52 # # Hpy188I: # [TCNGA] # 4 42 54 # # MboII: # [GAAGA] # 17 83 # # MseI: # [TTAA] # 46 54 # # PsiI: # [TTATAA] # 35 65 # # SetI: # [ASST] # 46 54 # # TspDTI: # [ATGAA] # 23 77 # # TspEI: # [AATT] # 10 10 33 47 # # VspI: # [ATTAAT] # 46 54 # #--------------------------------------- #--------------------------------------- # Total_sequences: 1 # Total_length: 100 # Reported_sequences: 1 # Reported_hitcount: 14 #---------------------------------------