Restriction Fragments for SNR52/snR52



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BLAST search | Genome Restriction Map | Design Primers for this sequence


The currently selected gene/sequence is :

SNR52/snR52 on chromosome V from coordinates 431220 to 431129.

The sequence you have requested is oriented with respect to the Crick (bottom) strand. Thus, the chromosomal coordinate of the beginning of the gene or sequence is larger than that of the end. The sequence shown here is the 5'-3' direction of the Crick strand and is the reverse complement of the Watson (top) strand.

seqfile=/share/crumb/www-data/html/tmp/gcgseq.tmp.2.24148.2

Start End Strand Enzyme_name Restriction_site 5prime 3prime 5primerev 3primerev 8 12 + TspDTI ATGAA 23 21 . . 16 25 + MslI CAYNNNNRTG 20 20 . . 23 28 + Hpy166II GTNNAC 25 25 . . 33 37 + Hpy188I TCNGA 35 34 . . 36 46 + Hin4I GAYNNNNNVTC 27 22 59 54 45 48 + TaqI TCGA 45 47 . . 36 46 - Hin4I GAYNNNNNVTC 59 54 27 22 79 83 + Hin4II* CCTTC 89 88 . . 86 90 + Hpy188I TCNGA 88 87 . . #--------------------------------------- # # # Hin4I: # [GAYNNNNNVTC] # 0 0 27 32 33 # # Hin4II*: # [CCTTC] # 3 89 # # Hpy166II: # [GTNNAC] # 25 67 # # Hpy188I: # [TCNGA] # 4 35 53 # # MslI: # [CAYNNNNRTG] # 20 72 # # TaqI: # [TCGA] # 45 47 # # TspDTI: # [ATGAA] # 23 69 # #--------------------------------------- #--------------------------------------- # Total_sequences: 1 # Total_length: 92 # Reported_sequences: 1 # Reported_hitcount: 9 #---------------------------------------