Restriction Fragments for OGG1/YML060W



Send questions or suggestions to SGD

BLAST search | Genome Restriction Map | Design Primers for this sequence


The currently selected gene/sequence is :

OGG1/YML060W on chromosome XIII from coordinates 151871 to 153001.

seqfile=/share/crumb/www-data/html/tmp/gcgseq.tmp.5725.2

Start End Strand Enzyme_name Restriction_site 5prime 3prime 5primerev 3primerev 6 11 + PsiI TTATAA 8 8 . . 10 15 + ApoI RAATTY 10 14 . . 11 14 + TspEI AATT 10 14 . . 28 33 + VspI ATTAAT 29 31 . . 29 32 + MseI TTAA 29 31 . . 41 44 + SetI ASST 44 40 . . 41 44 + CviJI RGCY 42 42 . . 41 44 + AluI AGCT 42 42 . . 49 52 + MaeI CTAG 49 51 . . 61 66 + SfeI* CTRYAG 61 65 . . 66 69 + CviJI RGCY 67 67 . . 67 72 + Cac8I GCNNGC 69 69 . . 69 74 + BalI TGGCCA 71 71 . . 69 74 + CfrI YGGCCR 69 73 . . 70 73 + CviJI RGCY 71 71 . . 70 73 + HaeIII GGCC 71 71 . . 77 87 + BsiYI* CCNNNNNNNGG 83 80 . . 81 84 + TaqI TCGA 81 83 . . 83 87 - BccI CCATC 77 78 . . 93 97 + FokI GGATG 106 110 . . 93 97 + BseGI GGATG 99 97 . . 95 99 + TspDTI ATGAA 110 108 . . 103 106 + MseI TTAA 103 105 . . 110 115 + TatI WGTACW 110 114 . . 111 114 + Csp6I GTAC 111 113 . . 111 114 + RsaI GTAC 112 112 . . 108 112 - BsrI ACTGG 108 106 . . 117 126 + MslI CAYNNNNRTG 121 121 . . 124 128 + TspDTI ATGAA 139 137 . . 126 130 + MboII GAAGA 138 137 . . 133 136 + CviJI RGCY 134 134 . . 133 136 + HaeIII GGCC 134 134 . . 134 139 + Cac8I GCNNGC 136 136 . . 165 168 - MnlI CCTC 158 157 . . 173 177 + TspDTI ATGAA 188 186 . . 175 179 + MboII GAAGA 187 186 . . 175 180 - Ksp632I* CTCTTC 170 173 . . 185 190 + XhoII RGATCY 185 189 . . 186 189 + DpnI GATC 187 187 . . 186 189 + BstKTI GATC 188 186 . . 186 189 + MboI GATC 185 189 . . 188 194 + PfoI TCCNGGA 188 193 . . 189 193 + BssKI CCNGG 188 193 . . 189 193 + BseBI CCWGG 190 191 . . 189 193 + ScrFI CCNGG 190 191 . . 189 193 + EcoRII CCWGG 188 193 . . 186 190 - BinI* GGATC 180 181 . . 193 198 + ApoI RAATTY 193 197 . . 194 197 + TspEI AATT 193 197 . . 209 219 + MwoI GCNNNNNNNGC 215 212 . . 212 216 + Tsp4CI* ACNGT 214 213 . . 222 227 + Hpy178III* TCNNGA 223 225 . . 226 230 + HgaI GACGC 235 240 . . 226 231 + AcyI GRCGYC 227 229 . . 232 235 + MseI TTAA 232 234 . . 247 251 + TspDTI ATGAA 262 260 . . 251 256 + SspI AATATT 253 253 . . 266 269 + TaiI ACGT 269 265 . . 266 269 + SetI ASST 269 265 . . 266 269 + MaeII ACGT 266 268 . . 266 271 + AflIII ACRYGT 266 270 . . 270 274 + Tsp45I GTSAC 269 274 . . 270 274 + MaeIII GTNAC 269 274 . . 265 270 - BtrI CACGTC 267 267 . . 272 278 + TspRI CASTGNN 278 269 . . 274 279 + Eco57MI CTGRAG 295 293 . . 274 279 + Eco57I CTGAAG 295 293 . . 287 290 + TaqI TCGA 287 289 . . 300 304 + TfiI GAWTC 300 303 . . 300 304 + HinfI GANTC 300 303 . . 335 346 + TstI CACNNNNNNTCC 326 321 358 353 341 345 + SfaNI GCATC 350 354 . . 345 355 + BsiYI* CCNNNNNNNGG 351 348 . . 342 346 - FokI GGATG 328 332 . . 342 346 - BseGI GGATG 341 339 . . 344 348 - TspGWI ACGGA 334 332 . . 354 357 + CviJI RGCY 355 355 . . 354 357 + HaeIII GGCC 355 355 . . 354 358 + BmgT120I GGNCC 355 356 . . 354 358 + AsuI* GGNCC 354 357 . . 356 361 + SecI* CCNNGG 356 360 . . 357 361 + BssKI CCNGG 356 361 . . 357 361 + BseBI CCWGG 358 359 . . 357 361 + ScrFI CCNGG 358 359 . . 357 361 + EcoRII CCWGG 356 361 . . 360 365 + NlaIV GGNNCC 362 362 . . 364 369 + DsaI* CCRYGG 364 368 . . 364 369 + StyI CCWWGG 364 368 . . 364 369 + NcoI CCATGG 364 368 . . 364 369 + SecI* CCNNGG 364 368 . . 365 368 + FatI CATG 364 368 . . 365 368 + NlaIII CATG 368 364 . . 365 368 + CviAII CATG 365 367 . . 370 374 - BsmAI GTCTC 364 368 . . 392 399 + PspXI VCTCGAGB 393 397 . . 393 398 + SmlI CTYRAG 393 397 . . 393 398 + XhoI CTCGAG 393 397 . . 393 398 + BmeT110I CYCGRG 394 396 . . 393 398 + AvaI CYCGRG 393 397 . . 394 397 + TaqI TCGA 394 396 . . 412 417 + Hpy178III* TCNNGA 413 415 . . 417 420 + TspEI AATT 416 420 . . 430 433 + CviRI* TGCA 431 431 . . 436 439 + CviJI RGCY 437 437 . . 448 451 + TspEI AATT 447 451 . . 452 457 + Hpy178III* TCNNGA 453 455 . . 460 463 + MseI TTAA 460 462 . . 475 479 - BccI CCATC 469 470 . . 508 513 + BseRI GAGGAG 523 521 . . 508 511 - MnlI CCTC 501 500 . . 512 515 + SetI ASST 515 511 . . 512 515 + CviJI RGCY 513 513 . . 512 515 + AluI AGCT 513 513 . . 520 525 + Hpy178III* TCNNGA 521 523 . . 521 526 + SmlI CTYRAG 521 525 . . 521 526 + XhoI CTCGAG 521 525 . . 521 526 + BmeT110I CYCGRG 522 524 . . 521 526 + AvaI CYCGRG 521 525 . . 522 525 + TaqI TCGA 522 524 . . 525 528 + CviJI RGCY 526 526 . . 526 536 + MwoI GCNNNNNNNGC 532 529 . . 528 534 + TspRI CASTGNN 534 525 . . 530 535 + Eco57MI CTGRAG 551 549 . . 530 535 + Eco57I CTGAAG 551 549 . . 534 537 + CviJI RGCY 535 535 . . 548 551 + SetI ASST 551 547 . . 548 551 + CviJI RGCY 549 549 . . 548 551 + AluI AGCT 549 549 . . 553 556 + CviJI RGCY 554 554 . . 549 554 - GsaI CCCAGC 553 549 . . 549 554 - BseYI CCCAGC 549 553 . . 567 570 + SetI ASST 570 566 . . 567 570 + CviJI RGCY 568 568 . . 567 570 + AluI AGCT 568 568 . . 569 573 + DdeI CTNAG 569 572 . . 581 584 + TaqI TCGA 581 583 . . 587 590 + AciI CCGC 587 589 . . 588 591 + FnuDII* CGCG 589 589 . . 597 601 + BsrI ACTGG 602 600 . . 600 604 + HphI GGTGA 612 611 . . 612 615 + SetI ASST 615 611 . . 612 615 + CviJI RGCY 613 613 . . 612 615 + AluI AGCT 613 613 . . 614 619 + Eco57MI CTGRAG 635 633 . . 614 619 + Eco57I CTGAAG 635 633 . . 618 621 + SetI ASST 621 617 . . 618 621 + CviJI RGCY 619 619 . . 618 621 + AluI AGCT 619 619 . . 622 627 + SspI AATATT 624 624 . . 631 635 + Hpy188I TCNGA 633 632 . . 644 647 + SetI ASST 647 643 . . 645 649 + Hin4II* CCTTC 655 654 . . 664 668 - SfaNI GCATC 654 658 . . 674 678 + TspDTI ATGAA 689 687 . . 676 680 + MboII GAAGA 688 687 . . 676 681 + BbvII* GAAGAC 683 687 . . 680 683 + TaiI ACGT 683 679 . . 680 683 + SetI ASST 683 679 . . 680 683 + MaeII ACGT 680 682 . . 686 696 + BplI GAGNNNNNCTC 677 672 709 704 688 693 + SduI GDGCHC 692 688 . . 688 693 + HgiAI* GWGCWC 692 688 . . 691 702 + TstI CACNNNNNNTCC 682 677 714 709 692 695 + SetI ASST 695 691 . . 693 696 + MnlI CCTC 703 702 . . 696 699 + FatI CATG 695 699 . . 696 699 + NlaIII CATG 699 695 . . 696 699 + CviAII CATG 696 698 . . 686 696 - BplI GAGNNNNNCTC 709 704 677 672 714 720 + DraII RGGNCCY 715 718 . . 715 718 + CviJI RGCY 716 716 . . 715 718 + HaeIII GGCC 716 716 . . 715 720 + NlaIV GGNNCC 717 717 . . 715 719 + BmgT120I GGNCC 716 717 . . 715 719 + AsuI* GGNCC 715 718 . . 747 751 + BslFI GGGAC 761 765 . . 754 763 + MslI CAYNNNNRTG 758 758 . . 756 759 + FatI CATG 755 759 . . 756 759 + NlaIII CATG 759 755 . . 756 759 + CviAII CATG 756 758 . . 759 763 + FokI GGATG 772 776 . . 759 763 + BseGI GGATG 765 763 . . 764 768 + SfaNI GCATC 773 777 . . 760 764 - BccI CCATC 754 755 . . 769 773 - BslFI GGGAC 754 758 . . 784 787 + FatI CATG 783 787 . . 784 787 + NlaIII CATG 787 783 . . 784 787 + CviAII CATG 784 786 . . 795 798 + TspEI AATT 794 798 . . 801 805 + MboII GAAGA 813 812 . . 801 813 + BarI GAAGNNNNNNTAC 793 788 825 820 801 806 - Ksp632I* CTCTTC 796 799 . . 806 810 + BslFI GGGAC 820 824 . . 804 807 - MnlI CCTC 797 796 . . 834 838 + BccI CCATC 842 843 . . 845 848 + TspEI AATT 844 848 . . 849 852 - MnlI CCTC 842 841 . . 870 873 + SetI ASST 873 869 . . 876 881 + SmlI CTYRAG 876 880 . . 877 882 + Hpy178III* TCNNGA 878 880 . . 876 881 - Bce83I* CTTGAG 861 859 . . 893 896 + SetI ASST 896 892 . . 895 898 + MaeI CTAG 895 897 . . 898 903 + SacI GAGCTC 902 898 . . 898 903 + Ecl136II GAGCTC 900 900 . . 898 903 + SduI GDGCHC 902 898 . . 898 903 + HgiJII* GRGCYC 902 898 . . 898 903 + HgiAI* GWGCWC 902 898 . . 899 902 + SetI ASST 902 898 . . 899 902 + CviJI RGCY 900 900 . . 899 902 + AluI AGCT 900 900 . . 902 905 + TaqI TCGA 902 904 . . 915 920 + VspI ATTAAT 916 918 . . 916 919 + MseI TTAA 916 918 . . 925 930 + AhaIII* TTTAAA 927 927 . . 926 929 + MseI TTAA 926 928 . . 937 941 + BinI* GGATC 945 946 . . 938 941 + DpnI GATC 939 939 . . 938 941 + BstKTI GATC 940 938 . . 938 941 + MboI GATC 937 941 . . 946 956 + MwoI GCNNNNNNNGC 952 949 . . 953 958 + SduI GDGCHC 957 953 . . 953 958 + Bsp120I GGGCCC 953 957 . . 953 958 + NlaIV GGNNCC 955 955 . . 953 957 + BmgT120I GGNCC 954 955 . . 953 958 + HgiJII* GRGCYC 957 953 . . 953 958 + BseSI GKGCMC 957 953 . . 953 957 + AsuI* GGNCC 953 956 . . 953 958 + ApaI GGGCCC 957 953 . . 954 957 + CviJI RGCY 955 955 . . 954 957 + HaeIII GGCC 955 955 . . 954 958 + BmgT120I GGNCC 955 956 . . 954 958 + AsuI* GGNCC 954 957 . . 957 962 + StyI CCWWGG 957 961 . . 957 962 + SecI* CCNNGG 957 961 . . 960 963 + SetI ASST 963 959 . . 983 987 + Hpy188I TCNGA 985 984 . . 988 992 + BslFI GGGAC 1002 1006 . . 986 989 - MnlI CCTC 979 978 . . 991 996 + SpeI ACTAGT 991 995 . . 992 995 + MaeI CTAG 992 994 . . 1009 1013 + BsrI ACTGG 1014 1012 . . 1013 1016 + Csp6I GTAC 1013 1015 . . 1013 1016 + RsaI GTAC 1014 1014 . . 1023 1027 + MboII GAAGA 1035 1034 . . 1023 1028 - Ksp632I* CTCTTC 1018 1021 . . 1051 1055 + TspGWI ACGGA 1066 1064 . . 1058 1063 + MfeI CAATTG 1058 1062 . . 1059 1062 + TspEI AATT 1058 1062 . . 1063 1067 + MaeIII GTNAC 1062 1067 . . 1075 1079 + TspDTI ATGAA 1090 1088 . . 1091 1094 + TspEI AATT 1090 1094 . . 1096 1100 + Hpy188I TCNGA 1098 1097 . . 1099 1102 + DpnI GATC 1100 1100 . . 1099 1102 + BstKTI GATC 1101 1099 . . 1099 1102 + MboI GATC 1098 1102 . . 1101 1105 - MboII GAAGA 1093 1092 . . #--------------------------------------- # # # AciI: # [CCGC] # 544 587 # # AcyI: # [GRCGYC] # 227 904 # # AflIII: # [ACRYGT] # 266 865 # # AhaIII*: # [TTTAAA] # 204 927 # # AluI: # [AGCT] # 6 19 36 42 45 231 # 281 471 # # ApaI: # [GGGCCC] # 174 957 # # ApoI: # [RAATTY] # 10 183 938 # # AsuI*: # [GGNCC] # 1 177 238 354 361 # # AvaI: # [CYCGRG] # 128 393 610 # # BalI: # [TGGCCA] # 71 1060 # # BarI: # [GAAGNNNNNNTAC] # 32 306 793 # # BbvII*: # [GAAGAC] # 448 683 # # BccI: # [CCATC] # 77 88 285 289 392 # # Bce83I*: # [CTTGAG] # 270 861 # # BinI*: # [GGATC] # 180 186 765 # # BmeT110I: # [CYCGRG] # 128 394 609 # # BmgT120I: # [GGNCC] # 1 176 238 355 361 # # BplI: # [GAGNNNNNCTC] # 0 0 32 422 677 # # BseBI: # [CCWGG] # 168 190 773 # # BseGI: # [GGATG] # 99 242 366 424 # # BseRI: # [GAGGAG] # 523 608 # # BseSI: # [GKGCMC] # 174 957 # # BseYI: # [CCCAGC] # 549 582 # # BsiYI*: # [CCNNNNNNNGG] # 83 268 780 # # BslFI: # [GGGAC] # 7 59 129 182 754 # # BsmAI: # [GTCTC] # 364 767 # # Bsp120I: # [GGGCCC] # 178 953 # # BsrI: # [ACTGG] # 108 117 412 494 # # BssKI: # [CCNGG] # 168 188 775 # # BstKTI: # [GATC] # 30 161 188 752 # # BtrI: # [CACGTC] # 267 864 # # Cac8I: # [GCNNGC] # 67 69 995 # # CfrI: # [YGGCCR] # 69 1062 # # Csp6I: # [GTAC] # 111 118 902 # # CviAII: # [CATG] # 28 60 331 347 365 # # CviJI: # [RGCY] # 4 5 6 9 13 14 # 14 25 42 45 55 63 # 76 82 97 176 184 221 # # CviRI*: # [TGCA] # 431 700 # # DdeI: # [CTNAG] # 562 569 # # DpnI: # [GATC] # 31 161 187 752 # # DraII: # [RGGNCCY] # 416 715 # # DsaI*: # [CCRYGG] # 364 767 # # Ecl136II: # [GAGCTC] # 231 900 # # Eco57I: # [CTGAAG] # 84 256 295 496 # # Eco57MI: # [CTGRAG] # 84 256 295 496 # # EcoRII: # [CCWGG] # 168 188 775 # # FatI: # [CATG] # 28 60 331 348 364 # # FnuDII*: # [CGCG] # 542 589 # # FokI: # [GGATG] # 106 222 359 444 # # GsaI: # [CCCAGC] # 553 578 # # HaeIII: # [GGCC] # 63 71 176 221 239 361 # # HgaI: # [GACGC] # 235 896 # # HgiAI*: # [GWGCWC] # 210 229 692 # # HgiJII*: # [GRGCYC] # 55 174 902 # # Hin4II*: # [CCTTC] # 476 655 # # HinfI: # [GANTC] # 300 831 # # HphI: # [GGTGA] # 519 612 # # Hpy178III*: # [TCNNGA] # 40 68 190 223 253 357 # # Hpy188I: # [TCNGA] # 33 113 352 633 # # Ksp632I*: # [CTCTTC] # 113 170 222 626 # # MaeI: # [CTAG] # 49 97 139 846 # # MaeII: # [ACGT] # 266 414 451 # # MaeIII: # [GTNAC] # 69 269 793 # # MboI: # [GATC] # 33 161 185 752 # # MboII: # [GAAGA] # 38 49 58 125 138 222 # 501 # # MfeI: # [CAATTG] # 73 1058 # # MnlI: # [CCTC] # 45 94 137 152 158 202 # 343 # # MseI: # [TTAA] # 10 29 74 129 205 228 # 456 # # MslI: # [CAYNNNNRTG] # 121 373 637 # # MwoI: # [GCNNNNNNNGC] # 179 215 317 420 # # NcoI: # [CCATGG] # 364 767 # # NlaIII: # [CATG] # 28 60 331 344 368 # # NlaIV: # [GGNNCC] # 176 238 355 362 # # PfoI: # [TCCNGGA] # 188 943 # # PsiI: # [TTATAA] # 8 1123 # # PspXI: # [VCTCGAGB] # 393 738 # # RsaI: # [GTAC] # 112 117 902 # # SacI: # [GAGCTC] # 229 902 # # ScrFI: # [CCNGG] # 168 190 773 # # SduI: # [GDGCHC] # 55 174 210 692 # # SecI*: # [CCNNGG] # 8 174 356 593 # # SetI: # [ASST] # 6 6 12 19 23 26 # 36 36 44 45 61 168 # 178 225 246 # # SfaNI: # [GCATC] # 119 304 350 358 # # SfeI*: # [CTRYAG] # 61 1070 # # SmlI: # [CTYRAG] # 128 255 355 393 # # SpeI: # [ACTAGT] # 140 991 # # SspI: # [AATATT] # 253 371 507 # # StyI: # [CCWWGG] # 174 364 593 # # TaiI: # [ACGT] # 269 414 448 # # TaqI: # [TCGA] # 59 81 107 128 206 229 # 321 # # TatI: # [WGTACW] # 110 1021 # # TfiI: # [GAWTC] # 300 831 # # Tsp45I: # [GTSAC] # 269 862 # # Tsp4CI*: # [ACNGT] # 214 917 # # TspDTI: # [ATGAA] # 29 41 49 74 110 401 # 427 # # TspEI: # [AATT] # 10 31 32 41 50 183 # 214 223 347 # # TspGWI: # [ACGGA] # 65 334 732 # # TspRI: # [CASTGNN] # 256 278 597 # # TstI: # [CACNNNNNNTCC] # 32 32 324 326 417 # # VspI: # [ATTAAT] # 29 215 887 # # XhoI: # [CTCGAG] # 128 393 610 # # XhoII: # [RGATCY] # 185 946 # #--------------------------------------- #--------------------------------------- # Total_sequences: 1 # Total_length: 1131 # Reported_sequences: 1 # Reported_hitcount: 257 #---------------------------------------