Restriction Fragments for YJRWdelta11



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BLAST search | Genome Restriction Map | Design Primers for this sequence


The currently selected gene/sequence is :

YJRWdelta11 on chromosome X from coordinates 472463 to 472800.

seqfile=/share/crumb/www-data/html/tmp/gcgseq.tmp.16010.2

Start End Strand Enzyme_name Restriction_site 5prime 3prime 5primerev 3primerev 65 69 + Tsp4CI* ACNGT 67 66 . . 71 74 + MseI TTAA 71 73 . . 97 100 + SetI ASST 100 96 . . 97 100 + CviJI RGCY 98 98 . . 97 100 + AluI AGCT 98 98 . . 93 103 - Hin4I GAYNNNNNVTC 116 111 84 79 105 108 + TaqI TCGA 105 107 . . 114 117 - MnlI CCTC 107 106 . . 119 122 + SetI ASST 122 118 . . 119 122 + CviJI RGCY 120 120 . . 119 122 + AluI AGCT 120 120 . . 149 153 + BinI* GGATC 157 158 . . 150 153 + DpnI GATC 151 151 . . 150 153 + BstKTI GATC 152 150 . . 150 153 + MboI GATC 149 153 . . 155 159 + TspDTI ATGAA 170 168 . . 174 178 + TspGWI ACGGA 189 187 . . 181 184 - MnlI CCTC 174 173 . . 181 191 - Hin4I GAYNNNNNVTC 204 199 172 167 194 199 + SspI AATATT 196 196 . . 216 220 + TfiI GAWTC 216 219 . . 216 220 + HinfI GANTC 216 219 . . 220 230 + BsiYI* CCNNNNNNNGG 226 223 . . 230 234 + TfiI GAWTC 230 233 . . 227 230 - MnlI CCTC 220 219 . . 230 234 + HinfI GANTC 230 233 . . 241 248 + PspXI VCTCGAGB 242 246 . . 241 244 + MnlI CCTC 251 250 . . 241 248 + AbsI CCTCGAGG 242 246 . . 242 247 + SmlI CTYRAG 242 246 . . 242 247 + XhoI CTCGAG 242 246 . . 242 247 + BmeT110I CYCGRG 243 245 . . 242 247 + AvaI CYCGRG 242 246 . . 243 246 + TaqI TCGA 243 245 . . 245 250 + BseRI GAGGAG 260 258 . . 245 248 - MnlI CCTC 238 237 . . 256 259 + MaeI CTAG 256 258 . . 268 273 + Hpy166II GTNNAC 270 270 . . 268 273 + BssNAI GTATAC 270 270 . . 268 273 + AccI GTMKAC 269 271 . . 272 275 + SetI ASST 275 271 . . 276 281 + SspI AATATT 278 278 . . 284 287 + CviJI RGCY 285 285 . . 301 305 + TfiI GAWTC 301 304 . . 301 305 + HinfI GANTC 301 304 . . 311 314 + TspEI AATT 310 314 . . #--------------------------------------- # # # AbsI: # [CCTCGAGG] # 96 242 # # AccI: # [GTMKAC] # 69 269 # # AluI: # [AGCT] # 22 98 218 # # AvaI: # [CYCGRG] # 96 242 # # BinI*: # [GGATC] # 157 181 # # BmeT110I: # [CYCGRG] # 95 243 # # BseRI: # [GAGGAG] # 78 260 # # BsiYI*: # [CCNNNNNNNGG] # 112 226 # # BssNAI: # [GTATAC] # 68 270 # # BstKTI: # [GATC] # 152 186 # # CviJI: # [RGCY] # 22 53 98 165 # # DpnI: # [GATC] # 151 187 # # Hin4I: # [GAYNNNNNVTC] # 32 32 56 84 134 # # HinfI: # [GANTC] # 14 37 71 216 # # Hpy166II: # [GTNNAC] # 68 270 # # MaeI: # [CTAG] # 82 256 # # MboI: # [GATC] # 149 189 # # MnlI: # [CCTC] # 13 18 46 67 87 107 # # MseI: # [TTAA] # 71 267 # # PspXI: # [VCTCGAGB] # 96 242 # # SetI: # [ASST] # 22 63 100 153 # # SmlI: # [CTYRAG] # 96 242 # # SspI: # [AATATT] # 60 82 196 # # TaqI: # [TCGA] # 95 105 138 # # TfiI: # [GAWTC] # 14 37 71 216 # # Tsp4CI*: # [ACNGT] # 67 271 # # TspDTI: # [ATGAA] # 168 170 # # TspEI: # [AATT] # 28 310 # # TspGWI: # [ACGGA] # 149 189 # # XhoI: # [CTCGAG] # 96 242 # #--------------------------------------- #--------------------------------------- # Total_sequences: 1 # Total_length: 338 # Reported_sequences: 1 # Reported_hitcount: 46 #---------------------------------------