Restriction Fragments for ABM1/YJR108W



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BLAST search | Genome Restriction Map | Design Primers for this sequence


The currently selected gene/sequence is :

ABM1/YJR108W on chromosome X from coordinates 628712 to 629083.

seqfile=/share/crumb/www-data/html/tmp/gcgseq.tmp.1185.2

Start End Strand Enzyme_name Restriction_site 5prime 3prime 5primerev 3primerev 10 13 + SetI ASST 13 9 . . 9 12 - MnlI CCTC 2 1 . . 12 15 + Csp6I GTAC 12 14 . . 12 15 + RsaI GTAC 13 13 . . 20 25 + Hpy178III* TCNNGA 21 23 . . 25 29 + Tsp4CI* ACNGT 27 26 . . 31 35 - BccI CCATC 25 26 . . 36 41 + HindIII AAGCTT 36 40 . . 37 40 + SetI ASST 40 36 . . 37 40 + CviJI RGCY 38 38 . . 37 40 + AluI AGCT 38 38 . . 40 45 + AhaIII* TTTAAA 42 42 . . 41 44 + MseI TTAA 41 43 . . 44 49 + ApoI RAATTY 44 48 . . 45 48 + TspEI AATT 44 48 . . 49 53 - TspDTI ATGAA 39 37 . . 51 55 - FokI GGATG 37 41 . . 55 60 + StyI CCWWGG 55 59 . . 51 55 - BseGI GGATG 50 48 . . 55 60 + SecI* CCNNGG 55 59 . . 63 68 + SspI AATATT 65 65 . . 69 72 + MnlI CCTC 79 78 . . 72 77 + BsaAI YACGTR 74 74 . . 72 77 + PmaCI CACGTG 74 74 . . 73 76 + TaiI ACGT 76 72 . . 73 76 + SetI ASST 76 72 . . 73 76 + MaeII ACGT 73 75 . . 78 83 + ApoI RAATTY 78 82 . . 79 82 + TspEI AATT 78 82 . . 88 93 + HaeII RGCGCY 92 88 . . 88 93 + Eco47III AGCGCT 90 90 . . 89 92 + Hin6I GCGC 89 91 . . 89 92 + GlaI GCGC 90 90 . . 89 92 + HhaI GCGC 91 89 . . 91 95 + BlsI GCNGC 93 92 . . 91 95 + BisI GCNGC 92 93 . . 91 95 + TseI GCWGC 91 94 . . 93 96 + CviRI* TGCA 94 94 . . 95 98 + FatI CATG 94 98 . . 95 98 + NlaIII CATG 98 94 . . 95 98 + CviAII CATG 95 97 . . 91 95 - BbvI GCAGC 78 82 . . 98 101 + CviJI RGCY 99 99 . . 97 102 - TsoI TARCCA 87 85 . . 102 107 + ApoI RAATTY 102 106 . . 103 106 + TspEI AATT 102 106 . . 112 116 + TfiI GAWTC 112 115 . . 112 116 + HinfI GANTC 112 115 . . 120 125 + SnaBI TACGTA 122 122 . . 120 125 + BsaAI YACGTR 122 122 . . 121 124 + TaiI ACGT 124 120 . . 121 124 + SetI ASST 124 120 . . 121 124 + MaeII ACGT 121 123 . . 139 144 + BspLU11I* ACATGT 139 143 . . 139 144 + NspI RCATGY 143 139 . . 139 144 + AflIII ACRYGT 139 143 . . 140 143 + FatI CATG 139 143 . . 140 143 + NlaIII CATG 143 139 . . 140 143 + CviAII CATG 140 142 . . 147 152 + SduI GDGCHC 151 147 . . 147 152 + BseSI GKGCMC 151 147 . . 167 170 + MseI TTAA 167 169 . . 186 189 + SetI ASST 189 185 . . 186 189 + CviJI RGCY 187 187 . . 186 189 + AluI AGCT 187 187 . . 191 196 + SfeI* CTRYAG 191 195 . . 200 203 + TspEI AATT 199 203 . . 205 210 + Hpy166II GTNNAC 207 207 . . 205 210 + HindII GTYRAC 207 207 . . 212 215 + MaeI CTAG 212 214 . . 220 223 + MseI TTAA 220 222 . . 229 234 + SmlI CTYRAG 229 233 . . 229 234 + XhoI CTCGAG 229 233 . . 229 234 + BmeT110I CYCGRG 230 232 . . 229 234 + AvaI CYCGRG 229 233 . . 230 233 + TaqI TCGA 230 232 . . 230 235 + Hpy178III* TCNNGA 231 233 . . 234 239 + BsmI GAATGC 240 238 . . 237 240 + CviRI* TGCA 238 238 . . 242 245 + AciI CCGC 242 244 . . 251 254 + MseI TTAA 251 253 . . 269 273 + TspDTI ATGAA 284 282 . . 271 275 + MboII GAAGA 283 282 . . 271 276 + BbvII* GAAGAC 278 282 . . 277 281 + MboII GAAGA 289 288 . . 282 293 + BdaI TGANNNNNNTCA 271 269 305 303 289 292 + MnlI CCTC 299 298 . . 292 295 + FatI CATG 291 295 . . 292 295 + NlaIII CATG 295 291 . . 292 295 + CviAII CATG 292 294 . . 282 293 - BdaI TGANNNNNNTCA 305 303 271 269 302 305 + TaiI ACGT 305 301 . . 302 305 + SetI ASST 305 301 . . 302 305 + MaeII ACGT 302 304 . . 311 316 + Cfr10I RCCGGY 311 315 . . 312 315 + HpaII CCGG 312 314 . . 314 317 + CviJI RGCY 315 315 . . 319 329 + Hin4I GAYNNNNNVTC 310 305 342 337 319 323 - BccI CCATC 313 314 . . 319 329 - Hin4I GAYNNNNNVTC 342 337 310 305 330 336 + Bpu10I CCTNAGC 331 334 . . 331 335 + DdeI CTNAG 331 334 . . 335 340 + Cac8I GCNNGC 337 337 . . 339 342 + Hin6I GCGC 339 341 . . 339 342 + GlaI GCGC 340 340 . . 339 342 + HhaI GCGC 341 339 . . 340 343 + FnuDII* CGCG 341 341 . . 341 351 + MwoI GCNNNNNNNGC 347 344 . . 350 354 + SfaNI GCATC 359 363 . . 356 360 + Tsp45I GTSAC 355 360 . . 356 360 + MaeIII GTNAC 355 360 . . 364 369 + ApoI RAATTY 364 368 . . 365 368 + TspEI AATT 364 368 . . #--------------------------------------- # # # AciI: # [CCGC] # 130 242 # # AflIII: # [ACRYGT] # 139 233 # # AhaIII*: # [TTTAAA] # 42 330 # # AluI: # [AGCT] # 38 149 185 # # ApoI: # [RAATTY] # 8 24 34 44 262 # # AvaI: # [CYCGRG] # 143 229 # # BbvI: # [GCAGC] # 78 294 # # BbvII*: # [GAAGAC] # 94 278 # # BccI: # [CCATC] # 25 59 288 # # BdaI: # [TGANNNNNNTCA] # 0 0 34 67 271 # # BisI: # [GCNGC] # 92 280 # # BlsI: # [GCNGC] # 93 279 # # BmeT110I: # [CYCGRG] # 142 230 # # Bpu10I: # [CCTNAGC] # 41 331 # # BsaAI: # [YACGTR] # 48 74 250 # # BseGI: # [GGATG] # 50 322 # # BseSI: # [GKGCMC] # 151 221 # # BsmI: # [GAATGC] # 132 240 # # BspLU11I*: # [ACATGT] # 139 233 # # Cac8I: # [GCNNGC] # 35 337 # # Cfr10I: # [RCCGGY] # 61 311 # # Csp6I: # [GTAC] # 12 360 # # CviAII: # [CATG] # 45 80 95 152 # # CviJI: # [RGCY] # 38 57 61 88 128 # # CviRI*: # [TGCA] # 94 134 144 # # DdeI: # [CTNAG] # 41 331 # # Eco47III: # [AGCGCT] # 90 282 # # FatI: # [CATG] # 45 81 94 152 # # FnuDII*: # [CGCG] # 31 341 # # FokI: # [GGATG] # 37 335 # # GlaI: # [GCGC] # 32 90 250 # # HaeII: # [RGCGCY] # 92 280 # # HhaI: # [GCGC] # 31 91 250 # # Hin4I: # [GAYNNNNNVTC] # 0 0 30 32 310 # # Hin6I: # [GCGC] # 33 89 250 # # HindII: # [GTYRAC] # 165 207 # # HindIII: # [AAGCTT] # 36 336 # # HinfI: # [GANTC] # 112 260 # # HpaII: # [CCGG] # 60 312 # # Hpy166II: # [GTNNAC] # 165 207 # # Hpy178III*: # [TCNNGA] # 21 141 210 # # MaeI: # [CTAG] # 160 212 # # MaeII: # [ACGT] # 48 70 73 181 # # MaeIII: # [GTNAC] # 17 355 # # MboII: # [GAAGA] # 6 83 283 # # MnlI: # [CCTC] # 2 73 77 220 # # MseI: # [TTAA] # 31 41 53 121 126 # # MwoI: # [GCNNNNNNNGC] # 25 347 # # NlaIII: # [CATG] # 45 77 98 152 # # NspI: # [RCATGY] # 143 229 # # PmaCI: # [CACGTG] # 74 298 # # RsaI: # [GTAC] # 13 359 # # SduI: # [GDGCHC] # 151 221 # # SecI*: # [CCNNGG] # 55 317 # # SetI: # [ASST] # 13 27 36 48 65 67 # 116 # # SfaNI: # [GCATC] # 13 359 # # SfeI*: # [CTRYAG] # 181 191 # # SmlI: # [CTYRAG] # 143 229 # # SnaBI: # [TACGTA] # 122 250 # # SspI: # [AATATT] # 65 307 # # StyI: # [CCWWGG] # 55 317 # # TaiI: # [ACGT] # 48 67 76 181 # # TaqI: # [TCGA] # 142 230 # # TfiI: # [GAWTC] # 112 260 # # TseI: # [GCWGC] # 91 281 # # TsoI: # [TARCCA] # 87 285 # # Tsp45I: # [GTSAC] # 17 355 # # Tsp4CI*: # [ACNGT] # 27 345 # # TspDTI: # [ATGAA] # 39 88 245 # # TspEI: # [AATT] # 8 24 34 44 97 165 # # XhoI: # [CTCGAG] # 143 229 # #--------------------------------------- #--------------------------------------- # Total_sequences: 1 # Total_length: 372 # Reported_sequences: 1 # Reported_hitcount: 113 #---------------------------------------